Contig 008753:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN035N05+                 TAAATAAATTTAATTAACTAAGATAACAAGTATCGTGATATTTTGAGAACATAC
rJMFF022E14-                                     GATAACAAGTATCGTGATATTTTGAGAACATAC
                      ____________________________________________________________
consensus                   TAAATAAATTTAATTAACTAAGATAACAAGTATCGTGATATTTTGAGAACATAC
 
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JMFN035N05+           AATCCAATCTCAAATTCTCTAAGCATATACGCATTGATCTTACATAGTGCTATGAAGCAA
rJMFF022E14-          AATCCAATCTCAAATTCTCTAAGCATATACGCATTGATCTTACATAGTGCTATGAAGCAA
rJMFF011F16-                      AATTCTCTAAGCATATACGCATTGATCTTACATAGTGCTATGAAGCAA
                      ____________________________________________________________
consensus             AATCCAATCTCAAATTCTCTAAGCATATACGCATTGATCTTACATAGTGCTATGAAGCAA
 
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JMFN035N05+           AATATCAAGATCTCAGACTTTTCTTATTCTAAAAACACTGGGCAAAATCCCTTCTAATTT
rJMFF022E14-          AATATCAAGATCTCAGACTTTTCTTATTCTAAAAACACTGGGCAAAATCCCTTCTAATTT
rJMFF011F16-          AATATCAAGATCTCAGACTTTTCTTATTCTAAAAACACTGGGCAAAATCCCTTCTAATTT
                      ____________________________________________________________
consensus             AATATCAAGATCTCAGACTTTTCTTATTCTAAAAACACTGGGCAAAATCCCTTCTAATTT
 
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JMFN035N05+           GTGTACTGCAAATTGTCACATTCAAATCTTCTTATGTCATGGCCTAAATTCTACTGCAAC
rJMFF022E14-          GTGTACTGCAAATTGTCACATTCAAATCTTCTTATGTCATGGCCTAAATTCTACTGCAAC
rJMFF011F16-          GTGTACTGCAAATTGTCACATTCAAATCTTCTTATGTCATGGCCTAAATTCTACTGCAAC
                      ____________________________________________________________
consensus             GTGTACTGCAAATTGTCACATTCAAATCTTCTTATGTCATGGCCTAAATTCTACTGCAAC
 
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JMFN035N05+           CTTAACTCATAAACTAAAATGCCCCAAGTGTCACTGCATTAAGTACAAGTACAAGCAGAA
rJMFF022E14-          CTTAACTCATAAACTAAAATGCCCCAAGTGTCACTGCATTAAGTACAAGTACAAGCAGAA
rJMFF011F16-          CTTAACTCATAAACTAAAATGCCCCAAGTGTCACTGCATTAAGTACAAGTACAAGCAGAA
                      ____________________________________________________________
consensus             CTTAACTCATAAACTAAAATGCCCCAAGTGTCACTGCATTAAGTACAAGTACAAGCAGAA
 
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JMFN035N05+           AGGGAGACCTGGATTCAGAAAACAAAAGAAGCGTACACGTAAACAGCCATTTTACGCTTC
rJMFF022E14-          AGGGAGACCTGGATTCAGAAAACAAAAGAAGCGTACACGTAAACAGCCATTTTACGCTTC
rJMFF011F16-          AGGGAGACCTGGATTCAGAAAACAAAAGAAGCGTACACGTAAACAGCCATTTTACGCTTC
                      ____________________________________________________________
consensus             AGGGAGACCTGGATTCAGAAAACAAAAGAAGCGTACACGTAAACAGCCATTTTACGCTTC
 
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JMFN035N05+           GTCGGCTGTGTCTGAGTCTTCATCGCTTTCGTCGTCTTTATCATCACCCATAACTTGATA
rJMFF022E14-          GTCGGCTGTGTCTGAGTCTTCATCGCTTTCGTCGTCTTTATCATCACCCATAACTTGATA
rJMFF011F16-          GTCGGCTGTGTCTGAGTCTTCATCGCTTTCGTCGTCTTTATCATCACCCATAACTTGATA
                      ____________________________________________________________
consensus             GTCGGCTGTGTCTGAGTCTTCATCGCTTTCGTCGTCTTTATCATCACCCATAACTTGATA
 
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JMFN035N05+           CACTTTGATAGATAACTTAGAATCTTTTTCTCCAAAATATTCCAACCCGGGCTTGAAGTC
rJMFF022E14-          CACTTTGATAGATAACTTAGAATCTTTTTCTCCAAAATATTCCAACCCGGGCTTGAAGTC
rJMFF011F16-          CACTTTGATAGATAACTTAGAATCTTTTTCTCCAAAATATTCCAACCCGGGCTTGAAGTC
JMFF011F16+                                                                      C
                      ____________________________________________________________
consensus             CACTTTGATAGATAACTTAGAATCTTTTTCTCCAAAATATTCCAACCCGGGCTTGAAGTC
 
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JMFN035N05+           TCGGTGCTTGACCAACAGCCAGCGGAGCAAACGGTCTTCCTTGTTGAGGTATTGCAGCTC
rJMFF022E14-          TCGGTGCTTGACCAACAGCCAGCGGAGCAAACGGTCTTCCTTGTTGAGGTATTGCAGCCC
rJMFF011F16-          TCGGTGCTTGACCAACAGCCAGCGGAGCAAACGGTCTTCCTTGTTGAGGTATTGCAGCTC
JMFF011F16+           TCGGTGCTTGACCAACAGCCAGCGGAGCAAACGGTCTTCCTTGTTGAGGTATTGCAGCTC
                      ____________________________________________________________
consensus             TCGGTGCTTGACCAACAGCCAGCGGAGCAAACGGTCTTCCTTGTTGAGGTATTGCAGCTC
 
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JMFN035N05+           ACTGT                                                       
rJMFF022E14-          ACTGTTGAAGCTAGGAGGTGTCATCATTGTCATTTGCATCAGTGTCCCCTGATAATATCT
rJMFF011F16-          ACTGTTGAAGCTAGGAGGTGTCATCATTGTCATTTGCATCAGTGTCCCCTGATAATATCT
JMFF022E14+                                                        CCCCTGATAATATCT
JMFF011F16+           ACTGTTGAAGCTAGGAGGTGTCATCATTGTCATTTGCATCAGTGTCCCCTGATAATATCT
                      ____________________________________________________________
consensus             ACTGTTGAAGCTAGGAGGTGTCATCATTGTCATTTGCATCAGTGTCCCCTGATAATATCT
 
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rJMFF022E14-          GCCATCGAGTTTCCTAATACCATAGCCCAGCTGAACAGTTCCAAAAGATTTTACATCTGT
rJMFF011F16-          GCCATCGAGTTTCCTAATACCATAGCCCAGCTGAACAGTTCCAAAAGATTTTACATCTGT
JMFF022E14+           GCCATCGAGTTTCCTAATACCATAGCCCAGCTGAACAGTTCCAAAAGATTTTACATCTGT
JMFF011F16+           GCCATCGAGTTTCCTAATACCATAGCCCAGCTGAACAGTTCCAAAAGATTTTACATCTGT
                      ____________________________________________________________
consensus             GCCATCGAGTTTCCTAATACCATAGCCCAGCTGAACAGTTCCAAAAGATTTTACATCTGT
 
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rJMFF022E14-          GAGTACTCCATTTCTAGTGTAAACATGCTTCCCCACCTTAGTAACCAAGTCTATCATCGC
rJMFF011F16-          GAGTACTCCATTTCTAGTGTAAACATGCTTCCCCACCTTAGTAACCAAGTCTATCATCGC
JMFF022E14+           GAGTACTCCATTTCTAGTGTAAACATGCTTCCCCACCTTAGTAACCAAGTCTATCATCGC
JMFF011F16+           GAGTACTCCATTTCTAGTGTAAACATGCTTCCCCACCTTAGTAACCAAGTCTATCATCGC
                      ____________________________________________________________
consensus             GAGTACTCCATTTCTAGTGTAAACATGCTTCCCCACCTTAGTAACCAAGTCTATCATCGC
 
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rJMFF022E14-          CTCCTTAATTATATTGGGTTTCAACAAAAGCATGCAG                       
rJMFF011F16-          CTCCTTAATTATATTGGGTTTCAACAAAAGCATGCAGTCATAAAGANGCATCTTGGTGCT
JMFF022E14+           CTCCTTAATTATATTGGGTTTCAACAAAAGCATGCAGTCATAAAGAGGCATCTTGGTGCT
JMFF011F16+           CTCCTTAATTATATTGGGTTTCAACAAAAGCATGCAGTCATAAAGAGGCATCTTGGTGCT
                      ____________________________________________________________
consensus             CTCCTTAATTATATTGGGTTTCAACAAAAGCATGCAGTCATAAAGAGGCATCTTGGTGCT
 
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rJMFF011F16-          CCTCTTCTTCACTCAAAAACCTTTCTCAACCTTGATTCCT                    
JMFF022E14+           CCTCTTCTTCACTCAAAAACCTTTCTCAACCTTGATTCCTTGAAACGGAGTGGTTGGCGA
JMFF011F16+           CCTCTTCTTCACTCAAAAACCTTTCTCAACCTTGATTCCTTGAAACGGAGTGGTTGGCGA
                      ____________________________________________________________
consensus             CCTCTTCTTCACTCAAAAACCTTTCTCAACCTTGATTCCTTGAAACGGAGTGGTTGGCGA
 
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JMFF022E14+           GTTGCGATCGCTGAGTCTCGTACGTACGCCGCTAAGTTGCTGACTGGGAGTGTCGTAGTG
JMFF011F16+           GTTGCGATCGCTGAGTCTCGTACGTACGCCGCTAAGTTGCTGACTGGGAGTGTCGTAGTG
                      ____________________________________________________________
consensus             GTTGCGATCGCTGAGTCTCGTACGTACGCCGCTAAGTTGCTGACTGGGAGTGTCGTAGTG
 
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JMFF022E14+           AGGTCTTACCGTTTGGCGTCTGAGGATGCGAGGAGCGAGGGC--AGGGCAGAGGGCGGAG
JMFF011F16+           AGGTCTTACCGTTTGGCGTCTGAGGATGCGAGGAGCGAGGGCAGAGGGCAGAGGGCGGAG
                      ____________________________________________________________
consensus             AGGTCTTACCGTTTGGCGTCTGAGGATGCGAGGAGCGAGGGCAGAGGGCAGAGGGCGGAG
 
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JMFF022E14+           GGCGTGAGGCGGTAGAGATGAGGGAGAAAGCAGTGTGACTGTGATATTGAGGGCGAATCA
JMFF011F16+           GGCGTGAGGCGGTAGAGATGAGGGAGAAAGCAGTGTGACTGTGATATTGAGGGCGAATCA
                      ____________________________________________________________
consensus             GGCGTGAGGCGGTAGAGATGAGGGAGAAAGCAGTGTGACTGTGATATTGAGGGCGAATCA
 
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JMFF022E14+           AGCGGAAGAGTGGAGAAGCCGAAAGTCGAAGACGGAAAGACCGGAGAGT           
JMFF011F16+           AGCGGAAGAGTGGAGAAGCCGAAAGTCGAAGACGGAAAGACCGGAGAGTGGAGAAATGAG
                      ____________________________________________________________
consensus             AGCGGAAGAGTGGAGAAGCCGAAAGTCGAAGACGGAAAGACCGGAGAGTGGAGAAATGAG