| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008N07 | Sequence | 536 | 008748 (11) | ref|XP_009610166.1| | 2e-50 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Nicotiana tomento | 688 | 005678 (9) | gb|KHN43447.1| | 7e-50 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMFF010N09 | Sequence | 649 | 008748 (11) | ref|XP_009610165.1| | 2e-65 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento | 772 | 005678 (9) | gb|KHN43447.1| | 2e-55 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMFF014M03 | Sequence | 578 | 008748 (11) | ref|XP_009610165.1| | 2e-62 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento | 820 | 005678 (9) | gb|KHN43447.1| | 3e-70 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMFF034C07 | Sequence | 331 | 008748 (11) | ref|XP_006388444.1| | 1e-32 | hypothetical protein POPTR_0184s002102g, partial [Populus trichocarpa] gb|ERP473 | 758 | 005678 (9) | gb|KHN43447.1| | 1e-67 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMFF041A20 | Sequence | 633 | 008748 (11) | ref|XP_009610166.1| | 1e-72 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Nicotiana tomento | 481 | 005678 (9) | gb|KHN19202.1| | 6e-26 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMFF043C04 | Sequence | 648 | 008748 (11) | ref|XP_009610165.1| | 5e-66 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento | 626 | 005678 (9) | ref|XP_009610165.1| | 9e-33 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento |
| JMFS069B08 | Sequence | 627 | 008748 (11) | ref|XP_009610166.1| | 1e-92 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Nicotiana tomento | |||||
| JMFS070H02 | Sequence | 625 | 008748 (11) | ref|XP_009610166.1| | 4e-75 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Nicotiana tomento | |||||
| JMFS075B01 | Sequence | 627 | 008748 (11) | ref|XP_009610166.1| | 2e-71 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Nicotiana tomento | |||||
| JMFS101G09 | Sequence | 604 | 008748 (11) | ref|XP_009610166.1| | 7e-70 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Nicotiana tomento | |||||
| JMSF009I24 | Sequence | 242 | 008748 (11) | ref|XP_006388444.1| | 7e-27 | hypothetical protein POPTR_0184s002102g, partial [Populus trichocarpa] gb|ERP473 | 743 | 005678 (9) | gb|KHN43447.1| | 7e-62 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
This contig is upended
. : . : . : . : . : . :
JMFS069B08+ AATAACATCCTGTTCACTC
____________________________________________________________
consensus AATAACATCCTGTTCACTC
. : . : . : . : . : . :
JMFS069B08+ ATGCCTGAAATAGAGGGATTTTCCTCGTAGAAGTCCTTGTTGAATGGCTCATAATCAATT
JMFF014M03+ TGGCTCATAATCAATT
JMFF010N09+ ATAGAGGGATTTTCCTCGTAGAAGTCCTTGTTGAATGGCTCATAATCAATT
____________________________________________________________
consensus ATGCCTGAAATAGAGGGATTTTCCTCGTAGAAGTCCTTGTTGAATGGCTCATAATCAATT
. : . : . : . : . : . :
JMFS069B08+ GAGCTATGATCCAGAGCTGGAATCGGCTCAATCTTTTTCTTGTCAAGAATTATAGGATTA
JMFF014M03+ GAGCTATGATCCAGAGCTGGAATCGGCTCAATCTTTTTCTTGTCAAGAATTATAGGATTA
JMFF010N09+ GAGCTATGATCCAGAGCTGGAATCGGCTCAATCTTTTTCTTGTCAAGAATTATAGGATTA
JMFF041A20+ TCGGCTCAATCTTTNTCTTGTCAAGAATTATAGGATTA
JMFS101G09+ TCTTGTCAAGAATTATAGGATTA
JMFS070H02+ CTGGAATCGGCTCAATCTTTTTCTTGTCAAGAATTATAGGATTA
JMFS075B01+ GAGCTGGAATCGGCTCAATC-TTTTCTTGTCAAGAATTATAGGATTA
JMFF043C04+ CAGAGCTGGAATCGGCTCAATCTTTTTCTTGTCAAGAATTATAGGATTA
____________________________________________________________
consensus GAGCTATGATCCAGAGCTGGAATCGGCTCAATCTTTTTCTTGTCAAGAATTATAGGATTA
. : . : . : . : . : . :
JMFS069B08+ TCATCGGAATCATACTCGACGAGCCCTGCGTCCACAGCCTTGGCTGCGGCATAAACCTCC
JMFF014M03+ TCATCGGAATCATACTCGACGAGCCCTGCGTCCACAGCCTTGGCTGCGGCATAAACCTCC
JMFF010N09+ TCATCGGAATCATACTCGACGAGCCCTGCGTCCACAGCCTTGGCTGCGGCATAAACCTCC
JMFF041A20+ TCATCGGAATCATACTCGACGAGCCCTGCGTCCACAGCCTTGGCTGCGGCATAAACCTCC
JMFS101G09+ TCATCGGAATCATACTCGACGAGCCCTGCGTCCACAGCCTTGGCTGCGGCATAAACCTCC
JMFS070H02+ TCATCGGAATCATACTCGACGAGCCCTGCGTCCACAGCCTTGGCTGCGGCATAAACCTCC
JMFS075B01+ TCATCGGAATCATACTCGACGAGCCCTGCGTCCACAGCCTTGGCTGCGGCATAAACCTCC
JMFF043C04+ TCATCGGAATCATACTCGACGAGCCCTGCGTCCACAGCCTTGGCTGCGGCATAAACCTCC
____________________________________________________________
consensus TCATCGGAATCATACTCGACGAGCCCTGCGTCCACAGCCTTGGCTGCGGCATAAACCTCC
. : . : . : . : . : . :
JMFS069B08+ TCAT-CCGAGTTATATCCAGCGTTAAGAGCCTCCGCAGCCAATTGCAACCCTATGTCCTT
JMFF014M03+ TCATCCCGAGTTATATCCAGCGTTAAGAGCCTCCGCAGCCAATTGCAACCCTATGTCCTT
JMFF010N09+ TCATCCCGAGTTATATCCAGCGTTAAGAGCCTCCGCAGCCAATTGCAACCCTATGTCCTT
JMFF041A20+ TCAT-CCGAGTTATATCCAGCGTTAAGAGCCTCCGCAGCCAATTGCAACCCTATGTCCTT
JMFS101G09+ TCAT-CCGAGTTATATCCAGCGTTAAGAGCCTCCGCAGCCAATTGCAACCCTATGTCCTT
JMFS070H02+ TCAT-CCGAGTTATATCCAGCGTTAAGAGCCTCCGCAGCCAATTGCAACCCTATGTCCTT
JMFS075B01+ TCAT-CCGAGTTATATCCAGCGTTAAGAGCCTCCGCAGCCAATTGCAACCCTATGTCCTT
JMFF043C04+ TCAT-CCGAGTTATATCCAGCGTTAAGAGCCTCCGCAGCCAATTGCAACCCTATGTCCTT
JMFF008N07+ T-CCGAGTTATATCCAGCGTTAAGAGCCTCCGCAGCCAATTGCAACCCTATGTCCTT
____________________________________________________________
consensus TCAT-CCGAGTTATATCCAGCGTTAAGAGCCTCCGCAGCCAATTGCAACCCTATGTCCTT
. : . : . : . : . : . :
JMFS069B08+ CTTCGCTTTCAGAAAACTCTCCATGGGATCATCCTCAATATCATCCTTGTACTTGTCCAA
JMFF014M03+ CTTCGCTTTCAGAAAACTCTCCATGGTATCATCCTCAATATCATCCTTGTACTTGTCCAA
JMFF010N09+ CTTCGCTTTCAGAAAACTCTCCATGGGATCATCCTCAATATCATCCTTGTACTTGTCCAA
JMFF041A20+ CTTCGCTTTCAGAAAACTCTCCATGGGATCATCCTCAATATCATCCTTGTACTTGTCCAA
JMFS101G09+ CTTCGCTTTCAGAAAACTCTCCATGGGATCATCCTCAATATCATCCTTGTACTTGTCCAA
JMFS070H02+ CTTCGCTTTCAGAAAACTCTCCATGGGATCATCCTCAATATCATCCTTGTACTTGTCCAA
JMFS075B01+ CTTCGCTTTCAGAAAACTCTCCATGGGATCATCCTCAATATCATCCTTGTACTTGTCCAA
JMFF043C04+ CTTCGCTTTCAGAAAACTCTCCATGGGATCATCCTCAATATCATCCTTGTACTTGTCCAA
JMFF008N07+ CTTCGCTTTCAGAAAACTCTCCATGGGATCATCCTCAATATCATCCTTGTACTTGTCCAA
____________________________________________________________
consensus CTTCGCTTTCAGAAAACTCTCCATGGGATCATCCTCAATATCATCCTTGTACTTGTCCAA
. : . : . : . : . : . :
JMFS069B08+ CTTCTCCTTGGGCTTCGGAGGCGGCGCTGCCTTCATCTCTTCGTGAATCCCCTCCATAAA
JMFF014M03+ CTTCTCCTTGGGCTTCGGAGGCGGCGCTGCCTTCATCTCTTCGTGAATCCCCTCCATAAA
JMFF010N09+ CTTCTCCTTGGGCTTCGGAGGCGGCGCTGCCTTCATCTCTCCGTGAATCCCCTCCATAAA
JMFF041A20+ CTTCTCCTTGGGCTTCGGAGGCGGCGCTGCCTTCATCTCTTCGTGAATCCCCTCCATAAA
JMFS101G09+ CTTCTCCTTGGGCTTCGGAGGCGGCGCTGCCTTCATCTCTTCGTGAATCCCCTCCATAAA
JMFF034C07+ TGCCTTCATCTCTTCGTGAATCCCCTCCATAAA
JMFS070H02+ CTTCTCCTTGGGCTTCGGAGGCGGCGCTGCCTTCATCTCTTCGTGAATCCCCTCCATAAA
JMFS075B01+ CTTCTCCTTGGGCTTCGGAGGCGGCGCTGCCTTCATCTCTTCGTGAATCCCCTCCATAAA
JMFF043C04+ CTTCTCCTTGGGCTTCGGAGGCGGCGCTGCCTTCATCTCTTCGTGAATCCCCTCCATAAA
JMFF008N07+ CTTCTCCTTGGGCTTCGGAGGCGGCGCTGCCTTCATCTCTTCGTGAATCCCCTCCATAAA
____________________________________________________________
consensus CTTCTCCTTGGGCTTCGGAGGCGGCGCTGCCTTCATCTCTTCGTGAATCCCCTCCATAAA
. : . : . : . : . : . :
JMFS069B08+ CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTGCCATCGTTAATATCATTATT
JMFF014M03+ CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTGCCATCGTTAATATCATTATT
JMFF010N09+ CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTGCCATCGTTAATATCATTATT
JMFF041A20+ CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTGCCATCGTTAATATCATTATT
JMFS101G09+ CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTGCCATCGTTAATATCATTATT
JMFF034C07+ CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTGCCATCGTTAATATCATTATT
JMFS070H02+ CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTGCCATCGTTAATATCATTATT
JMFS075B01+ CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTGCCATCGTTAATATCATTATT
JMFF043C04+ CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTG--ATCGTTAATATCATTATT
JMFF008N07+ CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTGCCATCGTTAATATCATTATT
____________________________________________________________
consensus CGCATCCAGAGGGTCGATTTCATCGTCGGCACCACCACTGCCATCGTTAATATCATTATT
. : . : . : . : . : . :
JMFS069B08+ GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
JMFF014M03+ GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
JMFF010N09+ GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
JMFF041A20+ GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
JMFS101G09+ GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
JMFF034C07+ GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
JMSF009I24+ GTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
JMFS070H02+ GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
JMFS075B01+ GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
JMFF043C04+ GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
JMFF008N07+ GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
____________________________________________________________
consensus GTTGTCTTCGTTGCCATCTCGTTCATCGTAATCAATATTATCCAAGTCAGTATCTTCGTA
. : . : . : . : . : . :
JMFS069B08+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
JMFF014M03+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
JMFF010N09+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
JMFF041A20+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
JMFS101G09+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
JMFF034C07+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
JMSF009I24+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
JMFS070H02+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
JMFS075B01+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
JMFF043C04+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
JMFF008N07+ ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
____________________________________________________________
consensus ATTGTCGTGACCACCGACGGAGCGGGACGAGGGCGGTACGTAGAGACGCTGAGGAGCTTC
. : . : . : . : . : . :
JMFS069B08+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
JMFF014M03+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
JMFF010N09+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
JMFF041A20+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
JMFS101G09+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
JMFF034C07+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
JMSF009I24+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
JMFS070H02+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
JMFS075B01+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
JMFF043C04+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
JMFF008N07+ CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
____________________________________________________________
consensus CGCTCGCTCGAAGTTGTATGTTGCCTGTCGATTAATACCAAAGCCATCGAATCCGAACTT
. : . : . : . : . : . :
JMFS069B08+ TCTCTTCGA
JMFF014M03+ TCTCTTCGACATAGTT
JMFF010N09+ TCTCTTCGACATAGTTCTGTATTTCGGGTGACCACCGAGAAATCTGAAACCCTAAAAT
JMFF041A20+ TCTCTTCGACATAGTTCTGTATTTCGGGTGACCACCGAGAAATCTGAAACCCTAAAATAG
JMFS101G09+ TCTCTTCGACATAGTTCTGTATTTCGGGTGACCACCGAGAAATCTGAAACCCTAAAATAG
JMFF034C07+ TCTCTTCGACATAGTTCTGTATTTCGGGTGACCACCGAGAAATCTGAAACCCTAAAAT
JMSF009I24+ TCTCTTCGACATAGTTCTGTATTTCGGGTGACCACCGAGAAATCTGAAACCCTAAAAT
JMFS070H02+ TCTCTTCGACATAGTTCTGTATTTCGGGTGACCACCGAGAAATCTGAAACCCTAAAATAG
JMFS075B01+ TCTCTTCGACATAGTTCTGTATTTCGGGTGACCACCGAGAAATCTGAAACCCTAAAATAG
JMFF043C04+ TCTCTTCGACATAGTTCTGTATTTCGGGTGACCACCGAGAAATCTGAAACCCTAAAATAG
JMFF008N07+ TCTCTTCGACATAGTTCTGTATTTCGGGTGACCACCGAGAAATCTGAAACCCTAAAATAG
____________________________________________________________
consensus TCTCTTCGACATAGTTCTGTATTTCGGGTGACCACCGAGAAATCTGAAACCCTAAAATAG
. : . : . : . : . : . :
JMFF041A20+ CAATTGGACTGTCTTGTCCGGATAAACCCTAATTACGAATCGCTTGGTACTTCAA
JMFS101G09+ CAATTGGACTGTCTTGTCCGGATAAACCCTAATTACGAATCG
JMFS070H02+ CAATTGGACTGTCTTGTCCGGATAAACCCTAATTACGAATCG
JMFS075B01+ CAATTGGACTGTCTTGTCCGGATAAACCCTAATTACGAATCG
JMFF043C04+ CAATTGGACTGTCTTGTCCGGATAAACCCTAATTACGAATCGCTTGGTACTTCAA
JMFF008N07+ CAATTGGACTGTCTTGTCCGGATAAACCCTAATTACGAATCGCTTGGTACTTCAATCATC
____________________________________________________________
consensus CAATTGGACTGTCTTGTCCGGATAAACCCTAATTACGAATCGCTTGGTACTTCAATCATC