| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006K10 | Sequence | 494 | 008736 (3) | ref|XP_006453595.1| | 6e-36 | hypothetical protein CICLE_v10008182mg [Citrus clementina] gb|ESR66835.1| hypoth | 748 | 012237 (3) | ref|XP_007011905.1| | 5e-117 | Alpha/beta-Hydrolases superfamily protein [Theobroma cacao] gb|EOY29524.1| Alpha |
| JMSF001G08 | Sequence | 423 | 008736 (3) | ref|XP_011018041.1| | 6e-54 | PREDICTED: serine carboxypeptidase 24-like isoform X2 [Populus euphratica] | 769 | 012237 (3) | ref|XP_009792407.1| | 4e-112 | PREDICTED: serine carboxypeptidase 24-like [Nicotiana sylvestris] |
| JMSF045F07 | Sequence | 784 | 008736 (3) | ref|XP_006343642.1| | 9e-134 | PREDICTED: serine carboxypeptidase 24-like [Solanum tuberosum] | 824 | 012237 (3) | ref|XP_007011905.1| | 6e-133 | Alpha/beta-Hydrolases superfamily protein [Theobroma cacao] gb|EOY29524.1| Alpha |
This contig is upended
. : . : . : . : . : . :
JMSF045F07+ GAAATCATCGCATGGCTC
____________________________________________________________
consensus GAAATCATCGCATGGCTC
. : . : . : . : . : . :
JMSF045F07+ CACCAGAATGCTACAGTTCCAATGTTGTCATATTTGCTGTCTGTAACAGCATTTCCAACA
____________________________________________________________
consensus CACCAGAATGCTACAGTTCCAATGTTGTCATATTTGCTGTCTGTAACAGCATTTCCAACA
. : . : . : . : . : . :
JMSF045F07+ ATAAACCCTTTAAGGTTGATGATTGGGTGGGATAATCCTTTGTTATAATCAAAGATTTTG
____________________________________________________________
consensus ATAAACCCTTTAAGGTTGATGATTGGGTGGGATAATCCTTTGTTATAATCAAAGATTTTG
. : . : . : . : . : . :
JMSF045F07+ TTTGCTAACTGGGGAACGTAATGCCCTGCATAACTTTCTCCAGAAATGTAGAAATCTCTG
____________________________________________________________
consensus TTTGCTAACTGGGGAACGTAATGCCCTGCATAACTTTCTCCAGAAATGTAGAAATCTCTG
. : . : . : . : . : . :
JMSF045F07+ TATTTGTATTGTGGAAATCTTGACATCCATCTTACGAGGAAATTTAGGGCGTCATTTGCT
____________________________________________________________
consensus TATTTGTATTGTGGAAATCTTGACATCCATCTTACGAGGAAATTTAGGGCGTCATTTGCT
. : . : . : . : . : . :
JMSF045F07+ GTTCTGTTATCCCCAGAGTCTTTCAGATCAGAGCTTGTATTCGTGTACGAGAAACCAACA
____________________________________________________________
consensus GTTCTGTTATCCCCAGAGTCTTTCAGATCAGAGCTTGTATTCGTGTACGAGAAACCAACA
. : . : . : . : . : . :
JMSF001G08+ CCATGAATATTTGTTCAGA
JMSF045F07+ CCAGCAGGCGACTCAAGGAACAGAATATTTGCCACTTTATTCCATGAATATTTGTTCAGA
____________________________________________________________
consensus CCAGCAGGCGACTCAAGGAACAGAATATTTGCCACTTTATTCCATGAATATTTGTTCAGA
. : . : . : . : . : . :
JMSF001G08+ TATAGAGAGGAACCGGTTTTGTTGATCCGAAATGGACCTATTTCTTCCGATGCTCCATAA
JMSF045F07+ TATAGAGAGGAACCGGTTTTGTTGATCCGAAATGGACCTATTTCTTCCGATGCTCCATAA
JMFF006K10+ CCGATGCTCCATAA
____________________________________________________________
consensus TATAGAGAGGAACCGGTTTTGTTGATCCGAAATGGACCTATTTCTTCCGATGCTCCATAA
. : . : . : . : . : . :
JMSF001G08+ GCCACTGATGAACAACCTGGCCCTCCATTGAGCCAAAGAACAAGAGGCTTCTTATCTGGG
JMSF045F07+ GCCACTGATGAACAACCTGGCCCTCCATTGAGCCAAAGAACAAGAGGCTTCTTATCTGGG
JMFF006K10+ GCCACTGATGAACAACCTGGCCCTCCATTGAGCCAAAGAACAAGAGGCTTNTTATNTGGG
____________________________________________________________
consensus GCCACTGATGAACAACCTGGCCCTCCATTGAGCCAAAGAACAAGAGGCTTCTTATCTGGG
. : . : . : . : . : . :
JMSF001G08+ TTGGTGGTAGCTTGAGTGAGCCAGTAAAAGAGAGCACGGCCGTGGTCCTCGTTGACGGTG
JMSF045F07+ TTGGTGGTAGCTTGAGTGAGCCAGTAAAAGAGAGCACGGCCGTGGTCCTCGTTGACGGTG
JMFF006K10+ TTGGTGGTAGCTTGAGTGAGCCAGTAAAAGAGAGCACGGCCGTGGTCCTCGTTGACGGTG
____________________________________________________________
consensus TTGGTGGTAGCTTGAGTGAGCCAGTAAAAGAGAGCACGGCCGTGGTCCTCGTTGACGGTG
. : . : . : . : . : . :
JMSF001G08+ ACGTAGCCGGAAAACTGGGAAAATCCGACCGGCGGCTGGCCGGGGAGGGATGTGATACGA
JMSF045F07+ CCGTAGCCGGAAAACTGGGAAAATCCGACCGGCGGCTGGCCGGGGAGGGATGTGATACGA
JMFF006K10+ ACGTAGCCGGAAAACTGGGAAAATCCGACCGGCGGCTGGCCGGGGAGGGATGTGATACGA
____________________________________________________________
consensus ACGTAGCCGGAAAACTGGGAAAATCCGACCGGCGGCTGGCCGGGGAGGGATGTGATACGA
. : . : . : . : . : . :
JMSF001G08+ TCTAGCTCTTGCTGTTTGGTGAGAGCGACAACGTTGGAGGGGGAGAATGAGGAGAAACAA
JMSF045F07+ TCTAGCTCTTGCTGTTTGGTGAGAGCGACAACGTTGGAGGGGGAGAATGAGGAGAAACAA
JMFF006K10+ TCTAGCTCTTGCTGTTTGGTGAGAGCGACAACGTTGGAGGGGGAGAATGAGGAGAAACAA
____________________________________________________________
consensus TCTAGCTCTTGCTGTTTGGTGAGAGCGACAACGTTGGAGGGGGAGAATGAGGAGAAACAA
. : . : . : . : . : . :
JMSF001G08+ CATAGGAAAAAACACAAGAAAATTGAGGTTTGGGAAAGTGGTGCCGCCATTACTGCAATT
JMSF045F07+ CATAGGAAAAAACACAAGAAAATTGAGGTTTGGGAAAGTGGTGCCGCCATTACTGCAATT
JMFF006K10+ CATAGGAAAAAACNCAAGAAAATTGAGGTTTGGGAAAGTGGTGCCGCCATTACTGCAATT
____________________________________________________________
consensus CATAGGAAAAAACACAAGAAAATTGAGGTTTGGGAAAGTGGTGCCGCCATTACTGCAATT
. : . : . : . : . : . :
JMSF001G08+ GCACTACTCTTCACTCTCTACAATATAATGCTCTCCTCTGATC
JMSF045F07+ GCACTACTCTTCACTCTCTACAATATAATGCTCTCCTCTGATC
JMFF006K10+ GCACTACTCTTCACTCTNTACAATATAATGCTCTCCTCTGATCTCAGAGCTTAGAACAGT
____________________________________________________________
consensus GCACTACTCTTCACTCTCTACAATATAATGCTCTCCTCTGATCTCAGAGCTTAGAACAGT
. : . : . : . : . : . :
JMFF006K10+ GGCATGTTTATATATAGGGAGAGTATGTATGTAAGTGGCCGTTGGGGTTAGTTTAATTTG
____________________________________________________________
consensus GGCATGTTTATATATAGGGAGAGTATGTATGTAAGTGGCCGTTGGGGTTAGTTTAATTTG
. : . : . : . : . : . :
JMFF006K10+ GCATGTATGTGGATGGCAATAGTAGGACACATGGTTTGGGTTGGGGTGGTTGGGGGAGGT
____________________________________________________________
consensus GCATGTATGTGGATGGCAATAGTAGGACACATGGTTTGGGTTGGGGTGGTTGGGGGAGGT