Contig 008735:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006H02Sequence588008735 (2)ref|XP_009771290.1|9e-80PREDICTED: CSC1-like protein At4g02900, partial [Nicotiana sylvestris]756012302 (2)emb|CDP03600.1|2e-90unnamed protein product [Coffea canephora]
JMFF022D01Sequence334008735 (2)ref|XP_009771290.1|5e-34PREDICTED: CSC1-like protein At4g02900, partial [Nicotiana sylvestris]674012302 (2)emb|CDP03600.1|5e-72unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF006H02+                       CCATTGCTATGTGTGTCCATAGCTTCTGTGATCCAGAAGGAATATTCG
                      ____________________________________________________________
consensus                         CCATTGCTATGTGTGTCCATAGCTTCTGTGATCCAGAAGGAATATTCG
 
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JMFF006H02+           ATATCGACAGCTTGTCAATATCACTGAATGTCAAGTCCTCGCTGTGCTTCAACGCTTCAC
                      ____________________________________________________________
consensus             ATATCGACAGCTTGTCAATATCACTGAATGTCAAGTCCTCGCTGTGCTTCAACGCTTCAC
 
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JMFF006H02+           CGGTCCAATTAACAGGAACTAAGACAGCAAAAGATAAAAGCGTAATCGGGACAAATATTT
                      ____________________________________________________________
consensus             CGGTCCAATTAACAGGAACTAAGACAGCAAAAGATAAAAGCGTAATCGGGACAAATATTT
 
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JMFF006H02+           TCAGCCCCAGAAGGTAAATCCTTATATACACTGCAGAATCAAGACCTGCATGATCTATGA
                      ____________________________________________________________
consensus             TCAGCCCCAGAAGGTAAATCCTTATATACACTGCAGAATCAAGACCTGCATGATCTATGA
 
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JMFF022D01+                                     TGGGGCATCCAATTCAAGAACCTTAGATAAGTTC
JMFF006H02+           GTTNTGGTTGTGGCATTTTGAGTGCCTGGGGCATCCAATTCAAGAACCTTAGATAAGTTT
                      ____________________________________________________________
consensus             GTTNTGGTTGTGGCATTTTGAGTGCCTGGGGCATCCAATTCAAGAACCTTAGATAAGTTT
 
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JMFF022D01+           TGAAATCCAAATTCACAAATTTCCTCAGAAAGGGCCCTGAGCTTCTTGGGCTTGCTCTTA
JMFF006H02+           TGAAATCCAAATTCACAAATTTCCTCAGAAAGGGCCCTGAGCTTNTTGGGCTTGCTNTTA
                      ____________________________________________________________
consensus             TGAAATCCAAATTCACAAATTTCCTCAGAAAGGGCCCTGAGCTTCTTGGGCTTGCTCTTA
 
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JMFF022D01+           CACCCTTCAAATACCATTTTGGGAAGTACACTCTATCATTAAATGGTTGAAGGCGAAGAA
JMFF006H02+           CACCCTTCAAATACCATTTTGGGAAGTACACTNTATCATTAAATGGTTGAAGGCGAAGAA
                      ____________________________________________________________
consensus             CACCCTTCAAATACCATTTTGGGAAGTACACTCTATCATTAAATGGTTGAAGGCGAAGAA
 
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JMFF022D01+           CTGCAAAAGCCACCAGGAATGCAATAGCTGTCAGAAGATTGATCATGGCTGAAACAACAA
JMFF006H02+           CTGCAAAAGCCACCAGGAATGCAATAGCTGTCAGAAGATTGATCATGGNTGAAACAACAA
                      ____________________________________________________________
consensus             CTGCAAAAGCCACCAGGAATGCAATAGCTGTCAGAAGATTGATCATGGCTGAAACAACAA
 
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JMFF022D01+           TGTCCCCCTCACTAGCCATTTATATTTTCCTTCAAATGTTTCTTCTCAACCGATTTTGAT
JMFF006H02+           TGTCCCCCTCACTAGCCATTTATATTTTCCTTCAAATGTTTNTTNTCAACCGATTTTGAT
                      ____________________________________________________________
consensus             TGTCCCCCTCACTAGCCATTTATATTTTCCTTCAAATGTTTCTTCTCAACCGATTTTGAT
 
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JMFF022D01+           TTGGTGATGATGATGATGATGGAATGGGTCAGCAACAAGCCGGCTTCTTTCTCTTTGCTG
JMFF006H02+           TTGGTGATGATGATGATGATGGAATGGGTCAGCAACAAGCCGGCTTNTTTCTCTTTGCTG
                      ____________________________________________________________
consensus             TTGGTGATGATGATGATGATGGAATGGGTCAGCAACAAGCCGGCTTCTTTCTCTTTGCTG