Contig 008724:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004L10Sequence477008724 (3)ref|XP_010111628.1|2e-26E3 ubiquitin-protein ligase mib1 [Morus notabilis] gb|EXC31373.1| E3 ubiquitin-p752006781 (4)ref|XP_006356028.1|9e-29PREDICTED: ankyrin-3-like [Solanum tuberosum]
JMSF008G02Sequence388008724 (3)ref|XP_008353450.1|194PREDICTED: uncharacterized protein LOC103417020 [Malus domestica]795006781 (4)ref|XP_006338670.1|7e-32PREDICTED: inversin-like [Solanum tuberosum]
JMSF048F17Sequence718008724 (3)ref|XP_007214996.1|2e-106hypothetical protein PRUPE_ppa002307mg [Prunus persica] gb|EMJ16195.1| hypotheti770006781 (4)ref|XP_006338670.1|6e-32PREDICTED: inversin-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF008G02+                                                       CTGTAAGCCAACACAT
                      ____________________________________________________________
consensus                                                         CTGTAAGCCAACACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008G02+           GATCGGTGCAAGAATCAGCTAGAAGCTCCCTCAGAACCCCGAGATTACCTCCTCTAGCAG
                      ____________________________________________________________
consensus             GATCGGTGCAAGAATCAGCTAGAAGCTCCCTCAGAACCCCGAGATTACCTCCTCTAGCAG
 
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JMSF008G02+           CAGCATGAAGAGCTCTGTTCTGAATCTCCCACTTGTAAGCCGATGGAATGTCACCAACGT
JMSF048F17+                                               AAGCCGATGGAATGTCACCAACGT
                      ____________________________________________________________
consensus             CAGCATGAAGAGCTCTGTTCTGAATCTCCCACTTGTAAGCCGATGGAATGTCACCAACGT
 
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JMSF008G02+           GTTCTTCCAGCTCTTTGCCATTACCTGATAAGAACCTCGGGGAAACAGCATAATCAAAAA
JMSF048F17+           GTTCTTCCAGCTCTTTGCCATTACCTGATAAGAACCTCGGGGAAACAGCATAATCAAAAA
                      ____________________________________________________________
consensus             GTTCTTCCAGCTCTTTGCCATTACCTGATAAGAACCTCGGGGAAACAGCATAATCAAAAA
 
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JMSF008G02+           GAATCCTAAAGACATGAGAATTCTTACTCCTCGCAGCAGCATAGAATATATCAGTGACAC
JMSF048F17+           GAATCCTAAAGACATGAGAATTCTTACTCCTCGCAGCAGCATAGAATATATCAGTGACAC
                      ____________________________________________________________
consensus             GAATCCTAAAGACATGAGAATTCTTACTCCTCGCAGCAGCATAGAATATATCAGTGACAC
 
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JMSF008G02+           CATATTCTCCTTCGCCAAAGACAAGCAGGGGGTCTCTTTCGAGCAATTCTTGGACAAAAC
JMSF048F17+           CATATTCTCCTTCGCCAAAGACAAGCAGGGGGTCTCTTTCGAGCAATTCTTGGACAAAAC
                      ____________________________________________________________
consensus             CATATTCTCCTTCGCCAAAGACAAGCAGGGGGTCTCTTTCGAGCAATTCTTGGACAAAAC
 
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JMSF008G02+           TCGAGTCCCCAGCAGAGGCAGCAGTATACAGCAGCCATCCACCACATCCTCCTCTTATAA
JMSF048F17+           TCGAGTCCCCAGCAGAGGCAGCAGTATACAGCAGCCATCCACCACATCCTCCTCTTATAA
                      ____________________________________________________________
consensus             TCGAGTCCCCAGCAGAGGCAGCAGTATACAGCAGCCATCCACCACATCCTCCTCTTATAA
 
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JMSF008G02+           GAGAATTTTTGC                                                
JMSF048F17+           GAGAATTTTTGCCTTTCTTGTTCTCGCACTCCACAAGCAGCTTTCTTGCAACCTGAGACC
                      ____________________________________________________________
consensus             GAGAATTTTTGCCTTTCTTGTTCTCGCACTCCACAAGCAGCTTTCTTGCAACCTGAGACC
 
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JMSF048F17+           TACACTTAGCAACATCGTGAAACTGTGCTTCATCATCCCATACAGTCTCAAGGCGACGAA
                      ____________________________________________________________
consensus             TACACTTAGCAACATCGTGAAACTGTGCTTCATCATCCCATACAGTCTCAAGGCGACGAA
 
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JMSF048F17+           TTCTGCGCAGTGAGGTGAGCTTGAAAAGGTGATTGCTGTCCAGGCGAAGAAGTTCCCTGA
JMFF004L10+                                                GTCCAGGCGAAGAAGTTCCCTGA
                      ____________________________________________________________
consensus             TTCTGCGCAGTGAGGTGAGCTTGAAAAGGTGATTGCTGTCCAGGCGAAGAAGTTCCCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048F17+           CCAGATCATAGTGTCCATTGGCAGCTGCCCAGTCAATCGGGGATGCAAACCACCACTGGT
JMFF004L10+           CCAGATCATAGTGTCCATTGGCAGCTGCCCAGTCAATCGGGGATGCAAACCACCACTGGT
                      ____________________________________________________________
consensus             CCAGATCATAGTGTCCATTGGCAGCTGCCCAGTCAATCGGGGATGCAAACCACCACTGGT
 
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JMSF048F17+           CACCGGTGCTCTCCCA                                            
JMFF004L10+           CACCGGTGCTCTCCCACCGGAGAGGAAAGTAGGTTGGGGACATTGAAAACCAAGTATACC
                      ____________________________________________________________
consensus             CACCGGTGCTCTCCCACCGGAGAGGAAAGTAGGTTGGGGACATTGAAAACCAAGTATACC
 
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JMFF004L10+           AAATTCACCAACAAAGTGTTATCTTTCTCTTGAAAATTGAAATAGCTCTTTGTAAAGTCC
                      ____________________________________________________________
consensus             AAATTCACCAACAAAGTGTTATCTTTCTCTTGAAAATTGAAATAGCTCTTTGTAAAGTCC
 
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JMFF004L10+           ACTTCAACTTTTGGTAAAGCTTTTTTGCTTTTGTTTTGTTTTGTTGCGAGGAGGGTTGAG
                      ____________________________________________________________
consensus             ACTTCAACTTTTGGTAAAGCTTTTTTGCTTTTGTTTTGTTTTGTTGCGAGGAGGGTTGAG
 
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JMFF004L10+           GAGGCTGACAGCGTATGAGAAGGTGGTACAAGTAAGTGTATGAAAAGGAGAGATTCCTCT
                      ____________________________________________________________
consensus             GAGGCTGACAGCGTATGAGAAGGTGGTACAAGTAAGTGTATGAAAAGGAGAGATTCCTCT
 
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JMFF004L10+           TGAAATGTGAAAGCCGCTTTTAAGTATGGAGATCAGAGAGAGATCCCGCGCCAAAGACAG
                      ____________________________________________________________
consensus             TGAAATGTGAAAGCCGCTTTTAAGTATGGAGATCAGAGAGAGATCCCGCGCCAAAGACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF004L10+           AATATACGGTGTGGGTTCCGGTCGGCGGTGACTGCTACGCCTACGGTGCAACGAAGATAT
                      ____________________________________________________________
consensus             AATATACGGTGTGGGTTCCGGTCGGCGGTGACTGCTACGCCTACGGTGCAACGAAGATAT