Contig 008720:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004A18Sequence549008720 (3)ref|XP_009778085.1|6e-87PREDICTED: probable alpha-amylase 2 [Nicotiana sylvestris] ref|XP_009778086.1| P757001081 (4)ref|XP_002301935.2|8e-115hypothetical protein POPTR_0002s01570g [Populus trichocarpa] gb|EEE81208.2| hypo
JMFF014H18Sequence541008720 (3)ref|XP_009778085.1|7e-85PREDICTED: probable alpha-amylase 2 [Nicotiana sylvestris] ref|XP_009778086.1| P778001081 (4)ref|XP_002301935.2|2e-91hypothetical protein POPTR_0002s01570g [Populus trichocarpa] gb|EEE81208.2| hypo
JMFN030G03Sequence592008720 (3)ref|XP_009778085.1|1e-99PREDICTED: probable alpha-amylase 2 [Nicotiana sylvestris] ref|XP_009778086.1| P

Alignment

This contig is upended


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JMFN030G03+                                                          TAATAATGTCCTT
                      ____________________________________________________________
consensus                                                            TAATAATGTCCTT
 
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JMFN030G03+           TCGAACAAAGCCTTGAGTATGATCGATATTTGGAACACCATGAAAATNGTCTCCAGTGCT
JMFF014H18+                                                                      T
JMFF004A18+                                                              TCCAGTGCT
                      ____________________________________________________________
consensus             TCGAACAAAGCCTTGAGTATGATCGATATTTGGAACACCATGAAAATNGTCTCCAGTGCT
 
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JMFN030G03+           TCTGTTGCCCAGTCCACCACTACAACATGTAACAGCATGCTCATCCCAAGGCAATGGAAT
JMFF014H18+           TCTGTTGCCCAGTCCACCACTACAACATGTAACAGCATGCTCATCCCAAGGCAATGGAAT
JMFF004A18+           TCTGTTGCCCAGTCCACCACTACAACATGTAACAGCATGCTCATCCCAAGGCAATGGAAT
                      ____________________________________________________________
consensus             TCTGTTGCCCAGTCCACCACTACAACATGTAACAGCATGCTCATCCCAAGGCAATGGAAT
 
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JMFN030G03+           TCCATCATATCGGTTATACCTCCCACCATGCCCTTGAGTAGTCCCAACACGATGATTTAT
JMFF014H18+           TCCATCATATCGGTTATACCTCCCACCATGCCCTTGAGTAGTCCCAACACGATGATTTAT
JMFF004A18+           TCCATCATATCGGTTATACCTCCCACCATGCCCTTGAGTAGTCCCAACACGATGATTTAT
                      ____________________________________________________________
consensus             TCCATCATATCGGTTATACCTCCCACCATGCCCTTGAGTAGTCCCAACACGATGATTTAT
 
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JMFN030G03+           GACTATATCAGCCATTGGTCTAACTTTGTACTGCTTCATCTTATTGAGTAGAGCCTTTAA
JMFF014H18+           GACTATATCAGCCATTGGTCTAACTTTGTACTGCTTCATCTTATTGAGTAGAGCCTTTAA
JMFF004A18+           GACTATATCAGCCATTGGTCTAACTTTGTACTGCTTCATCTTATTGAGTAGAGCCTTTAA
                      ____________________________________________________________
consensus             GACTATATCAGCCATTGGTCTAACTTTGTACTGCTTCATCTTATTGAGTAGAGCCTTTAA
 
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JMFN030G03+           GAGGTGTTCAGAACCATATGAAGAATTGAGATTATAGAGATTTTGTGGAAGGTAACCTTC
JMFF014H18+           GAGGTGTTCAGAACCATATGAAGAATTGAGATTATAGAGATTTTGTGGAAGGTAACCTTC
JMFF004A18+           GAGGTGCTCAGAACCATATGAAGAATTGAGATTATAGAGATTTTGTGGAAGGTAACCTTC
                      ____________________________________________________________
consensus             GAGGTGTTCAGAACCATATGAAGAATTGAGATTATAGAGATTTTGTGGAAGGTAACCTTC
 
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JMFN030G03+           TGGTGAAAAGGAATGAGAAGCCGGAGGCAACCATGCACTTGTAAATCCAGATTTTGAAAT
JMFF014H18+           TGGTGAAAAGGAATGAGAAGCCGGAGGCAACCATGCACTTGTAAATCCAGATTTTGAAAT
JMFF004A18+           TGGTGAAAAGGAATGAGAAGCCGGAGGCAACCATGCACTTGTAAATCCAGATTTTGAAAT
                      ____________________________________________________________
consensus             TGGTGAAAAGGAATGAGAAGCCGGAGGCAACCATGCACTTGTAAATCCAGATTTTGAAAT
 
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JMFN030G03+           ATCAGGAACTTTTCTCTCTAAGTTCCTCCACCAATCATGCTTGTGAGATTCCCAATTGAA
JMFF014H18+           ATCAGGAACTTTTCTCTCTAAGTTCCTCCACCAATCATGCTTGTGAGATTCCCAATTGAA
JMFF004A18+           ATCAGGAACTTTTCTCTCTAAGTTCCTCCACCAATCATGCTTGTGAGATTCCCAATTGAA
                      ____________________________________________________________
consensus             ATCAGGAACTTTTCTCTCTAAGTTCCTCCACCAATCATGCTTGTGAGATTCCCAATTGAA
 
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JMFN030G03+           AGCCTGTAAGATGATCTCTTGTCCATTGCGTATCACAACCAAGGGGTCATTCTGTTGCGA
JMFF014H18+           AGCCTGTAAGATGATCTCTTGTCCATTGCGTATCACAACCAAGGGGTCATTCTGTTGCGA
JMFF004A18+           AGCCTGTAAGATGATCTCTTGTCCATTGCGTATCACAACCAAGGGGTCATTCTGTTGCGA
                      ____________________________________________________________
consensus             AGCCTGTAAGATGATCTCTTGTCCATTGCGTATCACAACCAAGGGGTCATTCTGTTGCGA
 
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JMFN030G03+           GTTATTATCCCATCCATTGGTATGATAACCCATATCCAATCAAGCGCAATTTCAGAGTGA
JMFF014H18+           GTTATTATCCCATCCATTGGTATGATAACCCATATCCAATCAAGCGCAATTTCAGAGTGA
JMFF004A18+           GTTATTATCCCATCCATTGGTATGATAACCCATATCCAATCAAGCGCAATTTCAGAGTGA
                      ____________________________________________________________
consensus             GTTATTATCCCATCCATTGGTATGATAACCCATATCCAATCAAGCGCAATTTCAGAGTGA
 
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JMFN030G03+           TCGAGGCACGAGAACAGTGTCCTGTGCCCTATGCTCCAA                     
JMFF014H18+           TCGAGGCACGAGAACAGTGTCCTGTGCCCTATGCTCCAATAGAAAGCCCGATCGCAGCGT
JMFF004A18+           TCGAGGCACGAGAACAGTGTCCTGTGCCCTATGCTCCAATAGAAAGCCCGATCGCAGCGT
                      ____________________________________________________________
consensus             TCGAGGCACGAGAACAGTGTCCTGTGCCCTATGCTCCAATAGAAAGCCCGATCGCAGCGT