| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003F07 | Sequence | 554 | 008717 (5) | ref|XP_009766632.1| | 6e-19 | PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Nicotiana sy | 750 | 008717 (5) | ref|XP_009605564.1| | 191 | PREDICTED: uncharacterized protein LOC104100103 [Nicotiana tomentosiformis] |
| JMFF011P11 | Sequence | 523 | 008717 (5) | ref|XP_002284120.1| | 4e-13 | PREDICTED: thylakoidal processing peptidase 1, chloroplastic [Vitis vinifera] e | 676 | 008717 (5) | ref|XP_009766632.1| | 3e-83 | PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Nicotiana sy |
| JMFN031A03 | Sequence | 613 | 008717 (5) | ref|XP_003523894.1| | 2e-39 | PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic-like isof | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF011P11- TTAATTCTCATACA
____________________________________________________________
consensus TTAATTCTCATACA
. : . : . : . : . : . :
rJMFF011P11- ACTTATTGATAAACAAACATATTCAATCCATGATCACTAACTGGCCAAGAAGATTCCCAA
rJMFF003F07- ACTTATTGATAAACAAACATATTCAATCCATGATCACTAACTGGCCAAGAAGATTCCCAA
____________________________________________________________
consensus ACTTATTGATAAACAAACATATTCAATCCATGATCACTAACTGGCCAAGAAGATTCCCAA
. : . : . : . : . : . :
rJMFF011P11- ACTAAAGAATGGACTAACTAACAGCTACTGCTATAGCACAAAAGGGTTTAGTATTCACAG
rJMFF003F07- ACTAAAGAATGGACTAACTAACAGCTACTGCTATAGCACAAAAGGGTTTAGTATTCACAG
____________________________________________________________
consensus ACTAAAGAATGGACTAACTAACAGCTACTGCTATAGCACAAAAGGGTTTAGTATTCACAG
. : . : . : . : . : . :
rJMFF011P11- CTTTCTTATCAATGGCAAAACTCAAAAGAAACGACTTGTGCAGACTGCAGAGGAGGGTAT
rJMFF003F07- CTTTCTTATCAATGGCAAAACTCAAAAGAAACGACTTGTGCAGACTGCAGAGGAGGGTAT
____________________________________________________________
consensus CTTTCTTATCAATGGCAAAACTCAAAAGAAACGACTTGTGCAGACTGCAGAGGAGGGTAT
. : . : . : . : . : . :
rJMFF011P11- CCAGTCAAGAACTGGTAAGAGCTTTCCTCTCCAGGGTGTTCGACACACTCGAGGGAGGCC
rJMFF003F07- CCAGTCAAGAACTGGTAAGAGCTTTCCTCTCCAGGGTGTTCGACACACTCGAGGGAGGCC
____________________________________________________________
consensus CCAGTCAAGAACTGGTAAGAGCTTTCCTCTCCAGGGTGTTCGACACACTCGAGGGAGGCC
. : . : . : . : . : . :
rJMFF011P11- AGTATCGGTAAACTGATCGACCAACGATGTTTTTAACCGGGAGTGGACCCCAGTTATGCG
rJMFF003F07- AGTATCGGTAAACTGATCGACCAACGATGTTTTTAACCGGGAGTGGACCCCAGTTATGCG
____________________________________________________________
consensus AGTATCGGTAAACTGATCGACCAACGATGTTTTTAACCGGGAGTGGACCCCAGTTATGCG
. : . : . : . : . : . :
rJMFF011P11- AGTCAAAGCTGTTGTTACGATTGTCCCCCATCACAAACACATAGCCTTCAGGAACAAGCC
rJMFF003F07- AGTCAAAGCTGTTGTTACGATTGTCCCCCATCACAAACACATAGCCTTCAGGAACAAGCC
____________________________________________________________
consensus AGTCAAAGCTGTTGTTACGATTGTCCCCCATCACAAACACATAGCCTTCAGGAACAAGCC
. : . : . : . : . : . :
rJMFF011P11- TTCGTTTCATTTCATAATCAAGAGGTTCCAAAATGAACTCCTCATCTTCGGGAATGTCAT
rJMFF003F07- TTCGTTTCATTTCATAATCAAGAGGTTCCAAAATGAACTCCTCATCTTCGGGAATGTCAT
____________________________________________________________
consensus TTCGTTTCATTTCATAATCAAGAGGTTCCAAAATGAACTCCTCATCTTCGGGAATGTCAT
. : . : . : . : . : . :
rJMFF011P11- TCACGTACAGTTTACCATCTCGCACTTCCACATAATCACCAGCCGTTGCCACAACTCTTT
rJMFF003F07- TCACGTACAGTTTACCATCTCGCACTTCCACATAATCACCAGCCGTTGCCACAACTCTTT
____________________________________________________________
consensus TCACGTACAGTTTACCATCTCGCACTTCCACATAATCACCAGCCGTTGCCACAACTCTTT
. : . : . : . : . : . :
rJMFF011P11- TTATGAAAACATCCCCAGAACTATAACCAATCGCCTGGAGAGCAGGAGG-AGCTTTGAAG
rJMFF003F07- TTATGAAAACATCCCCAGAACTATAACCAATCGCCTGGAGAGCAGGAGGNAGCTTTGAAG
____________________________________________________________
consensus TTATGAAAACATCCCCAGAACTATAACCAATCGCCTGGAGAGCAGGAGGNAGCTTTGAAG
. : . : . : . : . : . :
rJMFF011P11- ATCACGATATCAGAAATTCCAGGCTTCCTGAAAATATACGACACCTTCTCTGCCATTATT
rJMFF003F07- ATCACGATATCAGAAATTCCAGGCTTCCTGAAAATATACGACACCTTCTCTGCCATTATT
JMFN031A03+ ACCTTCTCTGCCATTATT
____________________________________________________________
consensus ATCACGATATCAGAAATTCCAGGCTTCCTGAAAATATACGACACCTTCTCTGCCATTATT
. : . : . : . : . : . :
rJMFF011P11- CTATCACCCACATTCAGAGTAGGGTACATAGATGTGGAAGGAATCGACCTTGGCTCTGCC
rJMFF003F07- CTATCACCCACATTCAGAGTAGGGTACATAGATGTGGAAGGAATCGACCTTGGCTCTGCC
JMFN031A03+ CTATCACCCACATTCAGAGTAGGGTACATAGATGTGGAAGGAATCGACCTTGGCTCTGCC
____________________________________________________________
consensus CTATCACCCACATTCAGAGTAGGGTACATAGATGTGGAAGGAATCGACCTTGGCTCTGCC
. : . : . : . : . : . :
rJMFF011P11- AAA
rJMFF003F07- AAAGAGGACTTAAAGACCAAACTGATGCTTAAAGCTCTGAAAGCCGTCTTGGCATCCTCT
JMFN031A03+ AAAGAGGACTTAAAGACCAAACTGATGCTTAAAGCTCTGAAAGCCGTCTTGGCATCCTCT
____________________________________________________________
consensus AAAGAGGACTTAAAGACCAAACTGATGCTTAAAGCTCTGAAAGCCGTCTTGGCATCCTCT
. : . : . : . : . : . :
rJMFF003F07- GAGCTGATACTAAACATCTTA
JMFN031A03+ GAGCTGATACTAAACATCTTAGAGAGCCAGGTCGCCGTTGAAGGGTTTGAATTATTGGGA
____________________________________________________________
consensus GAGCTGATACTAAACATCTTAGAGAGCCAGGTCGCCGTTGAAGGGTTTGAATTATTGGGA
. : . : . : . : . : . :
JMFN031A03+ ATAGTAACCTCTTTGCTATTCTCAGTAATGGCGCCACCATTATCCAACAAAGTACTACCT
____________________________________________________________
consensus ATAGTAACCTCTTTGCTATTCTCAGTAATGGCGCCACCATTATCCAACAAAGTACTACCT
. : . : . : . : . : . :
JMFN031A03+ GTTCCAATTCCGACTTCATTGCAGGGCAGCCACTTCGAGGCTTGCAGAAACGGAACGATC
JMFF003F07+ AGAAACGGAACGATC
____________________________________________________________
consensus GTTCCAATTCCGACTTCATTGCAGGGCAGCCACTTCGAGGCTTGCAGAAACGGAACGATC
. : . : . : . : . : . :
JMFN031A03+ GACACTCGTCTCAGTGGAGAAATCCCGAAAACACCCGGTGCAGTCGAAACCCCAGGAGAA
JMFF011P11+ TCAGTGGAGAAATCCCGAAAACACCCGGTGCAGTCGAAACCCCAGGAGAA
JMFF003F07+ GACACTCGTCTCAGTGGAGAAATCCCGAAAACACCCGGTGCAGTCGAAACCCCAGGAGAA
____________________________________________________________
consensus GACACTCGTCTCAGTGGAGAAATCCCGAAAACACCCGGTGCAGTCGAAACCCCAGGAGAA
. : . : . : . : . : . :
JMFN031A03+ AACGTCGGCGATTTCATCAATGAAATCAATCCCGAAACCAGTGGAGATTCCAAGCCGCAG
JMFF011P11+ AACGTCGGCGATTTCATCAATGAAATCAATCCCGAAACCAGTGGAGATTCCAAGCCGCAG
JMFF003F07+ AACGTCGGCGATTTCATCAATGAAATCAATCCCGAAACCAGTGGAGATTCCAAGCCGCAG
____________________________________________________________
consensus AACGTCGGCGATTTCATCAATGAAATCAATCCCGAAACCAGTGGAGATTCCAAGCCGCAG
. : . : . : . : . : . :
JMFN031A03+ CCGAGAACGTCGGCTGCAATCGTAGAGAA
JMFF011P11+ CCGAGAACGTCGGCTGCAATCGTAGAGAAACGTCGAAGATGCGGCCGACGGTCGGACACT
JMFF003F07+ CCGAGAACGTCGGCTGCAATCGTAGAG-AACGTCGAAGATGCGGCCGACGGTCGGACACT
____________________________________________________________
consensus CCGAGAACGTCGGCTGCAATCGTAGAGAAACGTCGAAGATGCGGCCGACGGTCGGACACT
. : . : . : . : . : . :
JMFF011P11+ GACGAAATTGGCGTCGCGCTTGGAGCCGCGGAAATCGTTAGAGCTCGTGGAATCGGGGCT
JMFF003F07+ GACGAAATTGGCGTCGCGCTTGGAGCCGCGGAAATCGTTAGAGCTCGTGGAATCGGGGCT
____________________________________________________________
consensus GACGAAATTGGCGTCGCGCTTGGAGCCGCGGAAATCGTTAGAGCTCGTGGAATCGGGGCT
. : . : . : . : . : . :
JMFF011P11+ CTGAAAGAAACGAGATCGGGCGGAGCAGCATTCGTGGAGGAACCGGCAGCCGACCACCTT
JMFF003F07+ CTGAAAGAAACGAGATCGGGCGGAGCAGCATTCGTGGAGGAACCGGCAGCCGACCACCTT
____________________________________________________________
consensus CTGAAAGAAACGAGATCGGGCGGAGCAGCATTCGTGGAGGAACCGGCAGCCGACCACCTT
. : . : . : . : . : . :
JMFF011P11+ AGAGGCGGCGGAGGAGCTAAGGCTTTGGGCGACGTAGCCATAGTAAGCGACGGTGAATCG
JMFF003F07+ AGAGGCGGCGGAGGAGCTAAGGCTTTGGGCGACGTAGCCATAGTAAGCGACGGTGAATCG
____________________________________________________________
consensus AGAGGCGGCGGAGGAGCTAAGGCTTTGGGCGACGTAGCCATAGTAAGCGACGGTGAATCG
. : . : . : . : . : . :
JMFF011P11+ GATCGCCATAGCCGCAATTTCAGAGAGCTCAATAACAAATAAAGAATCCAAGAAGACTAC
JMFF003F07+ GATCGCCATAGCCGCAATTTCAGAGAGCTCAATAACAAATAAAGAATCCAAGAAGACTAC
____________________________________________________________
consensus GATCGCCATAGCCGCAATTTCAGAGAGCTCAATAACAAATAAAGAATCCAAGAAGACTAC
. : . : . : . : . : . :
JMFF011P11+ TGAGGACCTAAAAGAGCCGAACAAATTATACCGGAAGCTATTTACGACGATCAGACGAGA
JMFF003F07+ TGAGGACCTAAAAGAGCCGAACAAATTATACCGGAAGCTATTTACGACGATCAGACGAGA
____________________________________________________________
consensus TGAGGACCTAAAAGAGCCGAACAAATTATACCGGAAGCTATTTACGACGATCAGACGAGA
. : . : . : . : . : . :
JMFF011P11+ ATTGGAAAATTCAAAGTTTGAGACTCCGGGAGAGCTCTCCCAGAGAGAAGGAG
JMFF003F07+ ATTGGAAAATTCAAAGTTTGAGACTCCGGGAGAGCTCTCCCAGAGAGAAGGAGAAGAAAC
____________________________________________________________
consensus ATTGGAAAATTCAAAGTTTGAGACTCCGGGAGAGCTCTCCCAGAGAGAAGGAGAAGAAAC