Contig 008701:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001A22Sequence558008701 (4)ref|NP_001053457.2|1e-54Os04g0543900 [Oryza sativa Japonica Group] dbj|BAF15371.2| Os04g0543900 [Oryza s734002649 (5)gb|KJB19598.1|2e-112hypothetical protein B456_003G110800 [Gossypium raimondii]
JMFF034G14Sequence594008701 (4)emb|CDX87065.1|3e-80BnaC09g03800D [Brassica napus]769002649 (5)gb|KJB19598.1|2e-126hypothetical protein B456_003G110800 [Gossypium raimondii]
JMFF039A08Sequence572008701 (4)emb|CDX87065.1|9e-104BnaC09g03800D [Brassica napus]744002649 (5)gb|KJB19598.1|8e-101hypothetical protein B456_003G110800 [Gossypium raimondii]
JMSF033L01Sequence642008701 (4)ref|XP_004235200.1|4e-122PREDICTED: glutamate dehydrogenase A [Solanum lycopersicum]717002649 (5)gb|KJB19598.1|1e-117hypothetical protein B456_003G110800 [Gossypium raimondii]

Alignment

This contig is upended


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JMSF033L01+                        AAGGAGCCCCCGAGATCAATTGGTTTTCCTGTAACAATAGCAGGTGA
                      ____________________________________________________________
consensus                          AAGGAGCCCCCGAGATCAATTGGTTTTCCTGTAACAATAGCAGGTGA
 
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JMFF039A08+                                 TCATCCAGAATCCAAGCCATAGTCTGGGAATTAGTGCC
JMSF033L01+           GTGTCCATGAAACTTCGAATACTCATCCAGAATCCAAGCCATAGTCTGGGAATTAGTGCC
                      ____________________________________________________________
consensus             GTGTCCATGAAACTTCGAATACTCATCCAGAATCCAAGCCATAGTCTGGGAATTAGTGCC
 
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JMFF039A08+           CATATCAGGAGCCGGCACATCAGTATTAACGCCAATAAGATCATGAATCTTCTGGGTGAA
JMSF033L01+           CATATCAGGAGCCGGCACATCAGTATTAACGCCAATAAGATCATGAATCTTCTGGGTGAA
JMFF034G14+                                                                 GGTGAA
                      ____________________________________________________________
consensus             CATATCAGGAGCCGGCACATCAGTATTAACGCCAATAAGATCATGAATCTTCTGGGTGAA
 
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JMFF039A08+           GACACGCGTAAGGCGCTCCAACTCACTCTTACTTAAATCCTTAGGATTACATCCAATCCC
JMSF033L01+           GACACGCGTAAGGCGCTCCAACTCACTCTTACTTAAATCCTTAGGATTACATCCAATCCC
JMFF034G14+           GACACGCGTAAGGCGCTCCAACTCACTCTTACTTAAATCCTTAGGATTACATCCAATCCC
                      ____________________________________________________________
consensus             GACACGCGTAAGGCGCTCCAACTCACTCTTACTTAAATCCTTAGGATTACATCCAATCCC
 
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JMFF039A08+           ACCCTTAGCTCCACCATATGGAATATCTGCCACCGCACTCTTCCAGGTCATCAGTTGAGC
JMSF033L01+           ACCCTTAGCTCCACCATATGGAATATCTGCCACCGCACTCTTCCAGGTCATCAGTTGAGC
JMFF034G14+           ACCCTTAGCTCCACCATATGGAATATCTGCCACCGCACTCTTCCAGGTCATCAGTTGAGC
JMFF001A22+                                                     CCAGGTCATCAGTTGAGC
                      ____________________________________________________________
consensus             ACCCTTAGCTCCACCATATGGAATATCTGCCACCGCACTCTTCCAGGTCATCAGTTGAGC
 
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JMFF039A08+           AAGGGCATTTACCTCATCGGGGTCAACCTCAGGATGGTATCTGATTCCTCCTTTCATGGG
JMSF033L01+           AAGGGCATTTACCTCATCGGGGTCAACCTCAGGATGGTATCTGATTCCTCCTTTCATGGG
JMFF034G14+           AAGGGCATTTACCTCATCGGGGTCAACCTCAGGATGGTATCTGATTCCTCCTTTCATGGG
JMFF001A22+           AAGGGCATTTACCTCATCGGGGTCAACCTCAGGATGGTATCTGATTCCTCCTTTCATGGG
                      ____________________________________________________________
consensus             AAGGGCATTTACCTCATCGGGGTCAACCTCAGGATGGTATCTGATTCCTCCTTTCATGGG
 
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JMFF039A08+           CCCACGAGCATTATCATGCTGCACTCTAAATCCAACAAAGGACACCAGAGTTCCATCATC
JMSF033L01+           CCCACGAGCATTATCATGCTGCACTCTAAATCCAACAAAGGACACCAGAGTTCCATCATC
JMFF034G14+           CCCACGAGCATTATCATGCTGCACTCTAAATCCAACAAAGGACACCAGAGTTCCATCATC
JMFF001A22+           CCCACGAGCATTATCATGCTGCACTCTAAATCCAACAAAGGACACCAGAGTTCCATCATC
                      ____________________________________________________________
consensus             CCCACGAGCATTATCATGCTGCACTCTAAATCCAACAAAGGACACCAGAGTTCCATCATC
 
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JMFF039A08+           CTTTGGAATTGTGCACTCCACCTTAATTTCTCTGAAGGGGATGAGGAGACTCTTCTCGAT
JMSF033L01+           CTTTGGAATTGTGCACTCCACCTTAATTTCTCTGAAGGGGATGAGGAGACTCTTCTCGAT
JMFF034G14+           CTTTGGAATTGTGCACTCCACCTTAATTTCTCTGAAGGGGATGAGGAGACTCTTCTCGAT
JMFF001A22+           CTTTGGAATTGTGCACTCCACCTTAATTTCTCTGAAGGGGATGAGGAGACTCTTCTCGAT
                      ____________________________________________________________
consensus             CTTTGGAATTGTGCACTCCACCTTAATTTCTCTGAAGGGGATGAGGAGACTCTTCTCGAT
 
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JMFF039A08+           CTTGGAGTCCAGACCAAGAATGCGGGCCGCCTGGCGAAAGTTACGGGTGGTGGCTGCAAG
JMSF033L01+           CTTGGAGTCCAGACCAAGAATGCGGGCCGCCTGGCGAAAGTTACGGGTGGTGGCTGCAAG
JMFF034G14+           CTTGGAGTCCAGACCAAGAATGCGGGCCGCCTGGCGAAAGTTACGGGTGGTGGCTGCAAG
JMFF001A22+           CTTGGAGTCCAGACCAAGAATGCGGGCCGCCTGGCGAAAGTTACGGGTGGTGGCTGCAAG
                      ____________________________________________________________
consensus             CTTGGAGTCCAGACCAAGAATGCGGGCCGCCTGGCGAAAGTTACGGGTGGTGGCTGCAAG
 
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JMFF039A08+           GGCGTTCATGGCAGGCAAATCTCCGAGGAAAATTAACGAAAAGGGAAAGACAAAAACAGC
JMSF033L01+           GGCGTTCATGGCAGGCAAATCTCCGAGGAAAATTAACGAAAAGGGAAAGACAAAAACAGC
JMFF034G14+           GGCGTTCATGGCAGGCAAATCTCCGAGGAAAATTAACGAAAAGGGAAAGACAAAAACAGC
JMFF001A22+           GGCGTTCATGGCAGGCAAATCTCCGAGGAAAATTAACGAAAAGGGAAAGACAAAAACAGC
                      ____________________________________________________________
consensus             GGCGTTCATGGCAGGCAAATCTCCGAGGAAAATTAACGAAAAGGGAAAGACAAAAACAGC
 
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JMFF039A08+           AGATCAAAATAGTCCCAGCCTCCAAGGAAACAGGACGATACAACAAGCAACT        
JMSF033L01+           AGATCAAAATAGTCCCAGCCTCCAAGGAAACAGGACGATACAACAAGCAACT        
JMFF034G14+           AGATCAAAATAGTCCCAGCCTCCAAGGAAACAGGACGATACAACAAGCAACTGTGATCTA
JMFF001A22+           AGATCAAAATAGTCCCAGCCTCCAAGGAAACAGGACGATACAACAAGCAACTGTGATCTA
                      ____________________________________________________________
consensus             AGATCAAAATAGTCCCAGCCTCCAAGGAAACAGGACGATACAACAAGCAACTGTGATCTA
 
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JMFF034G14+           TGAATTGCAGACAAGCAATGTTATATATATATGGAGAAATAAAGAAGCAAAGATTGTAAA
JMFF001A22+           TGAATTGCAGACAAGCAATGTTATATATATATGGAGAAATAAAGAAGCAAAGATTGTAAA
                      ____________________________________________________________
consensus             TGAATTGCAGACAAGCAATGTTATATATATATGGAGAAATAAAGAAGCAAAGATTGTAAA
 
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JMFF034G14+           ATATGTTAGGTCTGACGGGGCAGTGACAGAGTTAGATTTCAACAATCT            
JMFF001A22+           ATATGTTAGGTCTGACGGGGCAGTGACAGAGTTAGATTTCAACAATCTGAATTTGGTCTT
                      ____________________________________________________________
consensus             ATATGTTAGGTCTGACGGGGCAGTGACAGAGTTAGATTTCAACAATCTGAATTTGGTCTT
 
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JMFF001A22+           TAAGGCGTCGGCGGATATAGGTACGCGGCGACTGGTGGATAATTTCTTGTCGTAGACAAT
                      ____________________________________________________________
consensus             TAAGGCGTCGGCGGATATAGGTACGCGGCGACTGGTGGATAATTTCTTGTCGTAGACAAT