| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP001E05 | Sequence | 553 | 008694 (9) | ref|XP_010680512.1| | 4e-72 | PREDICTED: polyadenylate-binding protein 2 [Beta vulgaris subsp. vulgaris] | |||||
| JMFN020C20 | Sequence | 659 | 008694 (9) | ref|XP_007205858.1| | 8e-116 | hypothetical protein PRUPE_ppa011157mg [Prunus persica] ref|XP_008234985.1| PRED | |||||
| JMFS020H06 | Sequence | 623 | 008694 (9) | ref|XP_007205858.1| | 5e-106 | hypothetical protein PRUPE_ppa011157mg [Prunus persica] ref|XP_008234985.1| PRED | |||||
| JMSF008N22 | Sequence | 299 | 008694 (9) | ref|XP_002267022.2| | 2e-21 | PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera] emb|CBI25873.3| unna | 742 | 008694 (9) | ref|XP_009344451.1| | 2e-74 | PREDICTED: polyadenylate-binding protein 2 isoform X1 [Pyrus x bretschneideri] |
| JMSF011I07 | Sequence | 255 | 008694 (9) | ref|XP_010041320.1| | 2e-18 | PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Eucalyptus grandis] | 746 | 008694 (9) | ref|XP_009344451.1| | 2e-98 | PREDICTED: polyadenylate-binding protein 2 isoform X1 [Pyrus x bretschneideri] |
| JMSF047G06 | Sequence | 659 | 008694 (9) | ref|XP_007205858.1| | 3e-118 | hypothetical protein PRUPE_ppa011157mg [Prunus persica] ref|XP_008234985.1| PRED | 783 | 008694 (9) | ref|XP_007205858.1| | 9e-111 | hypothetical protein PRUPE_ppa011157mg [Prunus persica] ref|XP_008234985.1| PRED |
This contig is upended
. : . : . : . : . : . :
rJMSF008N22- CATATTCTTTGAAATACATAACCGGTCTATACAAACTCT
____________________________________________________________
consensus CATATTCTTTGAAATACATAACCGGTCTATACAAACTCT
. : . : . : . : . : . :
rJMSF008N22- ACACAATTAACACGAACTGATAAGTATAATAGTGTTCATACTATAAGTAAAGTTCCAAGC
____________________________________________________________
consensus ACACAATTAACACGAACTGATAAGTATAATAGTGTTCATACTATAAGTAAAGTTCCAAGC
. : . : . : . : . : . :
rJMSF008N22- AACAGAATCTCATTAAAATGTTTAGTACATGAACTGTTCTTGAGAGAGTAGTGGATGAAG
rJMSF011I07- GTTCTTGAGAGAGTAGTGGATGAAG
rJMSF047G06- GTTCTTGAGAGAGTAGTGGATGAAG
____________________________________________________________
consensus AACAGAATCTCATTAAAATGTTTAGTACATGAACTGTTCTTGAGAGAGTAGTGGATGAAG
. : . : . : . : . : . :
rJMSF008N22- GAAGGAAACAGATTGTCAATGTATCTAAAATAAGCCTCATGG-TACATGGGGGGAAAGCG
rJMSF011I07- GAAGGAAACAGATTGTCAATGTATCTAAAATAAGCCTCATGGATACATGGGGGGAAAGCG
rJMSF047G06- GAAGGAAACAGATTGTCAATGTATCTAAAATAAGCCTCATGG-TACATGGGGGGAAAGCG
____________________________________________________________
consensus GAAGGAAACAGATTGTCAATGTATCTAAAATAAGCCTCATGG-TACATGGGGGGAAAGCG
. : . : . : . : . : . :
rJMSF008N22- GGGGCGGGGGCGGGGGGAGGGTGGACAAAGAACTCCATGTGTTTATGCTTGTAGCATCTG
rJMSF011I07- GGGGCGGGGGCGGGGGGAGGGTGGACAAAGAACTCCATGTGTTTATGCTTGTAGCATCTG
rJMSF047G06- GGGGCGGGGGCGGGGGGAGGGTGGACAAAGAACTCCATGTGTTTATGCTTGTAGCATCTG
____________________________________________________________
consensus GGGGCGGGGGCGGGGGGAGGGTGGACAAAGAACTCCATGTGTTTATGCTTGTAGCATCTG
. : . : . : . : . : . :
rJMSF008N22- CTTCATCATACTTTTAACAGCCACACATCTTTAATAAGGTGTATATGGTGATGCCCTCCT
rJMSF011I07- CTTCATCATACTTTTAACAGCCACACATCTTTAATAAGGTGTATATGGTGATGCCCTCCT
rJMSF047G06- CTTCATCATACTTTTAACAGCCACACATCTTTAATAAGGTGTATATGGTGATGCCCTCCT
JMFN020C20+ T
____________________________________________________________
consensus CTTCATCATACTTTTAACAGCCACACATCTTTAATAAGGTGTATATGGTGATGCCCTCCT
. : . : . : . : . : . :
rJMSF008N22- GAACCTTGGAACCTTCCCATATCCATATGGGGAATAGAAGTATGGGGGGACATAAGGCCT
rJMSF011I07- GAACCTTGGAACCTTCCCATATCCATATGGGGAATAGAAGTATGGGGGGACATAAGGCCT
rJMSF047G06- GAACCTTGGAACCTTCCCATATCCATATGGGGAATAGAAGTATGGGGGGACATAAGGCCT
JMFN020C20+ GAACCTTGGAACCTTCCCATATCCATATGGGGAATAGAAGTATGGGNGGACATAAGGCCT
JMFS020H06+ AGTATGGGGGGACATAAGGCCT
JMSF047G06+ CCTTGGAACCTTCCCATATCCATATGGGGAATAGAAGTATGGGGGGACATAAGGCCT
____________________________________________________________
consensus GAACCTTGGAACCTTCCCATATCCATATGGGGAATAGAAGTATGGGGGGACATAAGGCCT
. : . : . : . : . : . :
rJMSF008N22- CCTGAACCTGTATCCCATATAAGGATTGAAACGCCTTGGGCGGAATTGCTTCATTCCTGG
rJMSF011I07- CCTGAACCTGTATCCCATATAAGGATTGAAACGCCTTGGGCGGAATTGCTTCATTCCTGG
rJMSF047G06- CCTGAACCTGTATCCCATATAAGGATTGAAACGCCTTGGGCGGAATTGCTTCATTCCTGG
JMFN020C20+ CCTGAACCTGTATCCCATATAAGGATTGAAACGCCTTGGGCGGAATTGCTTCATTCCTGG
JMFS020H06+ CCTGAACCTGTATCCCATATAAGGATTGAAACGCCTTGGGCGGAATTGCTTCATTCCTGG
JMSF047G06+ CCTGAACCTGTATCCCATATAAGGATTGAAACGCCTTGGGCGGAATTGCTTCATTCCTGG
____________________________________________________________
consensus CCTGAACCTGTATCCCATATAAGGATTGAAACGCCTTGGGCGGAATTGCTTCATTCCTGG
. : . : . : . : . : . :
rJMSF008N22- AACATTGGTCCTCTTGGGCATAACCTTCAACTGGCGCCCATGCAGTTCAGATTCATTCAA
rJMSF011I07- AACATTGGTCCTCTTGGGCATAACCTTCAACTGGCGCCCATGCAGTTCAGATTCATTCAA
rJMSF047G06- AACATTGGTCCTCTTGGGCATAACCTTCAACTGGCGCCCATGCAGTTCAGATTCATTCAA
JMFN020C20+ AACATTGGTCCTCTTGGGCATAACCTTCAACTGGCGCCCATGCAGTTCAGATTCATTCAA
JMFS020H06+ AACATTGGTCCTCTTGGGCATAACCTTCAACTGGCGCCCATGCAGTTCAGATTCATTCAA
JMSF047G06+ AACATTGGTCCTCTTGGGCATAACCTTCAACTGGCGCCCATGCAGTTCAGATTCATTCAA
rJMCP001E05+ CAGATTCATTCAA
____________________________________________________________
consensus AACATTGGTCCTCTTGGGCATAACCTTCAACTGGCGCCCATGCAGTTCAGATTCATTCAA
. : . : . : . : . : . :
rJMSF008N22- CTGGAGTGCCTCCTGAATAGCTTCTTGTTCAACAAACTCCACATATGCAAAGCCTTTAGG
rJMSF011I07- CTGGAGTGCCTCCTGAATAGCTTCTTGTTCAACAAACTCCACATATGCAAAGCCTTTAGG
rJMSF047G06- CTGGAGTGCCTCCTGAATAGCTTCTTGTTCAACAAACTCCACATATGCAAAGCCTTTAGG
JMFN020C20+ CTGGAGTGCCTCCTGAATAGCTTCTTGTTCAACAAACTCCACATATGCAAAGCCTTTAGG
JMFS020H06+ CTGGAGTGCCTCCTGAATAGCTTCTTGTTCAACAAACTCCACATATGCAAAGCCTTTAGG
JMSF047G06+ CTGGAGTGCCTCCTGAATAGCTTCTTGTTCAACAAACTCCACATATGCAAAGCCTTTAGG
rJMCP001E05+ CTGGAGTGCCTCCTGAATAGCTTCTTGTTCAACAAACTCCACATATGCAAAGCCTTTAGG
____________________________________________________________
consensus CTGGAGTGCCTCCTGAATAGCTTCTTGTTCAACAAACTCCACATATGCAAAGCCTTTAGG
. : . : . : . : . : . :
rJMSF008N22- CTGACCAAACTTATCAGTCAGAATAGTAACTCGGTTCACGGTACCACATGGCTGGAAGTG
rJMSF011I07- CTGACCAAACTTATCAGTCAGAATAGTAACTCGGTTCACGGTACCACATGGCTGGAAGTG
rJMSF047G06- CTGACCAAACTTATCAGTCAGAATAGTAACTCGGTTCACGGTACCACATGGCTGGAAGTG
JMFN020C20+ CTGACCAAACTTATCAGTCAGAATAGTAACTCGGTTCACGGTACCACATGGCTGGAAGTG
JMFS020H06+ CTGACCAAACTTATCAGTCAGAATAGTAACTCGGTTCACGGTACCACATGGCTGGAAGTG
JMSF047G06+ CTGACCAAACTTATCAGTCAGAATAGTAACTCGGTTCACGGTACCACATGGCTGGAAGTG
rJMCP001E05+ CTGACCAAACTTATCAGTCAGAATAGTAACTCGGTTCACGGTACCACATGGCTGGAAGTG
____________________________________________________________
consensus CTGACCAAACTTATCAGTCAGAATAGTAACTCGGTTCACGGTACCACATGGCTGGAAGTG
. : . : . : . : . : . :
rJMSF008N22- TTGTTGAACTTCCTCCGGTGTGCATGCATAATCAAC
rJMSF011I07- TTGTTGAACTTCCTCCGGTGTGCATGCATAATCAACATTGCCAACAAAGATTGATCGTGA
rJMSF047G06- TTGTTGAACTTCCTCCGGTGTGCATGCATAATCAACATTGCCAACAAAGATTGATCGTGA
JMFN020C20+ TTGTTGAACTTCCTCCGGTGTGCATGCATAATCAACATTGCCAACAAAGATTGATCGTGA
JMFS020H06+ TTGTTGAACTTCCTCCGGTGTGCATGCATAATCAACATTGCCAACAAAGATTGATCGTGA
JMSF047G06+ TTGTTGAACTTCCTCCGGTGTGCATGCATAATCAACATTGCCAACAAAGATTGATCGTGA
rJMCP001E05+ TTGTTGAACTTCCTCCGGTGTGCATGCATAATCAACATTGCCAACAAAGATTGATCGTGA
____________________________________________________________
consensus TTGTTGAACTTCCTCCGGTGTGCATGCATAATCAACATTGCCAACAAAGATTGATCGTGA
. : . : . : . : . : . :
rJMSF011I07- ATCAACTTCCTCCTTGCTAGCCTGAGAAGCAGCACTGGCAGGATCTGTGTCACCTTGAAC
rJMSF047G06- ATCAACTTCCTCCTTGCTAGCCTGAGAAGCAGCACTGGCAGGAT---------CTTGAAC
JMFN020C20+ ATCAACTTCCTCCTTGCTAGCCTGAGAAGCAGCACTGGCAGGATCTGTGTCACCTTGAAC
JMFS020H06+ ATCAACTTCCTCCTTGCTAGCCTGAGAAGCAGCACTGGCAGGATCTGTGTCACCTTGAAC
JMSF047G06+ ATCAACTTCCTCCTTGCTAGCCTGAGAAGCAGCACTGGCAGGAT---------CTTGAAC
JMSF008N22+ CCTTGCTAGCCTGAGAAGCAGCACTGGCAGGATCTGTGTCACCTTGAAC
JMSF011I07+ AAC
rJMCP001E05+ ATCAACTTCCTCCTTGCTAGCCTGAGAAGCAGCACTGGCAGGATCTGTGTCACCTTGAAC
____________________________________________________________
consensus ATCAACTTCCTCCTTGCTAGCCTGAGAAGCAGCACTGGCAGGATCTGTGTCACCTTGAAC
. : . : . : . : . : . :
rJMSF011I07- AGCCCCCATCTCCTTCTCAACTTTAGCTTGCATCTCCCGAAGAGCTGCCGCTTCTTCCTC
rJMSF047G06- AGCCCCCATCTCCTTCTCAACTTTAGCTTGCATCTCCCGAAGAGCTGCCGCTTCTTCCTC
JMFN020C20+ AGCCCCCATCTCCTTCTCAACTTTAGCTTGCATCTCCCGAAGAGCTGCCGCTTCTTCCTC
JMFS020H06+ AGCCCCCATCTCCTTCTCAACTTTAGCTTGCATCTCCCGAAGAGCTGCCGCTTCTTCCTC
JMSF047G06+ AGCCCCCATCTCCTTCTCAACTTTAGCTTGCATCTCCCGAAGAGCTGCCGCTTCTTCCTC
JMSF008N22+ AGCCCCCATCTCCTTCTCAACTTTAGCTTGCATCTCCCGAAGAGCTGCCGCTTCTTCCTC
JMSF011I07+ AGCCCCCATCTCCTTCTCAACTTTAGCTTGCATCTCCCGAAGAGCTGCCGCTTCTTCCTC
rJMCP001E05+ AGCCCCCATCTCCTTCTCAACTTTAGCTTGCATCTCCCAAAGAGCTGCCGCTTCTTCCTC
____________________________________________________________
consensus AGCCCCCATCTCCTTCTCAACTTTAGCTTGCATCTCCCGAAGAGCTGCCGCTTCTTCCTC
. : . : . : . : . : . :
rJMSF011I07- CATCTCCTTTAGTCGCTTCTTCATCTCGTCCAATTCCTTAACGGCATCTTCGTCGGCGGT
rJMSF047G06- CATCTCCTTTAGTCGCTTCTTCATCTCGTCCAATTCCTTAACGGCATCTTCGTCGGCGGT
JMFN020C20+ CATCTCCTTTAGTCGCTTCTTCATCTCGTCCAATTCCTTAACGGCATCTTCGTCGGCGGT
JMFS020H06+ CATCTCCTTTAGTCGCTTCTTCATCTCGTCCAATTCCTTAACGGCATCTTCGTCGGCGGT
JMSF047G06+ CATCTCCTTTAGTCGCTTCTTCATCTCGTCCAATTCCTTAACGGCATCTTCGTCGGCGGT
JMSF008N22+ CATCTCCTTTAGTCGCTTCTTCATCTCGTCCAATTCCTTAACGGCATCTTCGTCGGCGGT
JMSF011I07+ CATCTCCTTTAGTCGCTTCTTCATCTCGTCCAATTCCTTAACGGCATCTTCGTCGGCGGT
rJMCP001E05+ CATCTCCTTTAGTCGCTTCTTCATCTCGTCCAATTCCTTAGCGGCATCTTCGTCGGCGGT
____________________________________________________________
consensus CATCTCCTTTAGTCGCTTCTTCATCTCGTCCAATTCCTTAACGGCATCTTCGTCGGCGGT
. : . : . : . : . : . :
rJMSF011I07- G
rJMSF047G06- GGACATGTCGACATCGGCGCCGTGAGCCTCCATATCTCCTTCCA
JMFN020C20+ GGACATGTCGACATCGGCGCCGTGAGCCTCCATATCTCCTTCCAATTCGCCTTCAACGGG
JMFS020H06+ GGACATGTCGACATCGGCGCCGTGAGCCTCCATATCTCCTTCCAATTCGCCTTCAACGGG
JMSF047G06+ GGACATGTCGACATCGGCGCCGTGAGCCTCCATATCTCCTTCCAATTCGCCTTCAACGGG
JMSF008N22+ GGACATGTCGACATCGGCGCCGTGAGCCTCCATATCTCCTTCCAATTCGCCTTCAACGGG
JMSF011I07+ GGACATGTCGACATCGGCGCCGTGAGCCTCCATATCTCCTTCCAATTCGCCTTCAACGGG
rJMCP001E05+ GGACATGTCGACATCGGCGCCGTGAGCCTCCATATCTCCTTCCAATTCGCCTTCAACGGG
____________________________________________________________
consensus GGACATGTCGACATCGGCGCCGTGAGCCTCCATATCTCCTTCCAATTCGCCTTCAACGGG
. : . : . : . : . : . :
JMFN020C20+ GATTTCTCCTCCGTACACCTCGTGCTCCTCTTCATCCATCTCCTTCAGTCAGATC
JMFS020H06+ GATTTCTCCTCCGTACACCTCGTGCTCCTCTTCATCCATCTCCTTCAGTCAGATCTGTTT
JMSF047G06+ GATTTCTCCTCCGTACACCTCGTGCTCCTCTTCATCCATCTCCTTCAGTCAGATCTGTTT
JMSF008N22+ GATTTCTCCTCCGTACACCTCGTGCTCCTCTTCATCCATCTCCTTCAGTCAGATCTGTTT
JMSF011I07+ GATTTCTCCTCCGTACACCTCGTGCTCCTCTTCATCCATCTCCTTCAGTCAGATCTGTTT
rJMCP001E05+ GATTTCTCCTCCGTACACCTCGTGCTCCTCTTCATCCATCTCCTTCAGTCAGATCTGTTT
____________________________________________________________
consensus GATTTCTCCTCCGTACACCTCGTGCTCCTCTTCATCCATCTCCTTCAGTCAGATCTGTTT
. : . : . : . : . : . :
JMFS020H06+ G
JMSF047G06+ GGGGGCTAC
JMSF008N22+ GGGGGCTAC
JMSF011I07+ GGGGGCTAC
rJMCP001E05+ GGGGGCTACTCGATTTGCCTAATACGTTAAGCACGCGCTTGAATACTACCGCTAGCGCAG
____________________________________________________________
consensus GGGGGCTACTCGATTTGCCTAATACGTTAAGCACGCGCTTGAATACTACCGCTAGCGCAG