Contig 008686:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041P08Sequence606013195 (2)ref|XP_010317114.1|4e-35PREDICTED: uncharacterized protein LOC101246016 isoform X2 [Solanum lycopersicu782008686 (3)ref|XP_010320943.1|2e-21PREDICTED: coilin isoform X1 [Solanum lycopersicum]
JMSF043F20Sequence749020080gb|EYU30618.1|7e-17hypothetical protein MIMGU_mgv11b024201mg, partial [Erythranthe guttata]789008686 (3)ref|XP_006357585.1|3e-24PREDICTED: DNA ligase 1-like [Solanum tuberosum]
JMSF052J11Sequence664021203ref|XP_010317114.1|3e-44PREDICTED: uncharacterized protein LOC101246016 isoform X2 [Solanum lycopersicu955008686 (3)ref|XP_004239144.1|3e-49PREDICTED: uncharacterized protein LOC101246716 isoform X4 [Solanum lycopersicu

Alignment

This contig is upended


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rJMSF052J11+               TGAAATGTCAAGTGCTGAAAAGATTACACATTGTGATGGATCAATTGACTTTGCT
                      ____________________________________________________________
consensus                  TGAAATGTCAAGTGCTGAAAAGATTACACATTGTGATGGATCAATTGACTTTGCT
 
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rJMSF052J11+          AAACTTCCATCCCTCTNTGATACACCTAAGGAAGGCGATGTGATTGCATATCGGCTGCTT
                      ____________________________________________________________
consensus             AAACTTCCATCCCTCTNTGATACACCTAAGGAAGGCGATGTGATTGCATATCGGCTGCTT
 
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rJMSF041P08+                                                               ATCATCA
rJMSF043F20+                                                    GTTGGCAAAGTATCATCA
rJMSF052J11+          AAGTTATCATCCAACTGGACTGCTGAGCTCTCCCCGTACCATGTTGGCAAAGTATCATCA
                      ____________________________________________________________
consensus             AAGTTATCATCCAACTGGACTGCTGAGCTCTCCCCGTACCATGTTGGCAAAGTATCATCA
 
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rJMSF041P08+          TTCAATTCTGAATCAAGTAGAGCTTCACTGATGCCAGTTGCCGGATATCCA-TTTATTCC
rJMSF043F20+          TTCAATTCTGAATCAAGTAGAGCTTCACTGATGCCAGTTGCCGGATATCCATTTTATTCC
rJMSF052J11+          TTCAATTCTGAATCAAGTAGAGCTTCACTGATGCCAGTTGCCGGATATCCATTTTATTCC
                      ____________________________________________________________
consensus             TTCAATTCTGAATCAAGTAGAGCTTCACTGATGCCAGTTGCCGGATATCCATTTTATTCC
 
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rJMSF041P08+          AAAAAGTCAGGTGAAGATGAATGTGCCATGCAACCTGATAGCTCTCTTTATAAAGAGGAT
rJMSF043F20+          AAAAAGTCAGGTGAAGATGAATGCGCCATGCAACCTGATAGCTCTCTTTATAAAGAGGAT
rJMSF052J11+          AAAAAGTCAGGTGAAGATGAATGTGCCATGCAACCTGATAGCTCTCTTTATAAAGAGGAT
                      ____________________________________________________________
consensus             AAAAAGTCAGGTGAAGATGAATGTGCCATGCAACCTGATAGCTCTCTTTATAAAGAGGAT
 
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rJMSF041P08+          GGATCATTGGAGATAGATTTGTCATCACTTGTTGATGTTCGTGTTGTAAAAACTACCACC
rJMSF043F20+          GGATCATTGGAGATAGATTTGTCATCACTTGTTGATGTTCGTGTTGTAAAAACTACCACC
rJMSF052J11+          GGATCATTGGAGATAGATTTGTCATCACTTGTTGATGTTCGTGTTGTAAAAACTACCACC
                      ____________________________________________________________
consensus             GGATCATTGGAGATAGATTTGTCATCACTTGTTGATGTTCGTGTTGTAAAAACTACCACC
 
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rJMSF041P08+          TTTAACCCTTCAAAAGAAGTTTCTGTTTGGACTGGTGTTGGTGCCTCCACCAACACATTA
rJMSF043F20+          TTTAACCCTTCAAAAGAAGTTTCTGTTTGGACT--TGTTGGTGCCTCCACCAACACATTA
rJMSF052J11+          TTTAACCCTTCAAAAGAAGTTTCTGTTTGGACTGGTGTTGGTGCCTCCACCAACACATTA
                      ____________________________________________________________
consensus             TTTAACCCTTCAAAAGAAGTTTCTGTTTGGACTGGTGTTGGTGCCTCCACCAACACATTA
 
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rJMSF041P08+          ACAGTATCGAGTGGCTCTAGTGATAAGCAAACACCTACTATTCCTGAAAATGGGGAAGTA
rJMSF043F20+          ACAGTATCGAGTGGCTCTAGTGATAAGCAAACACCTACTATTCCTGAAAATGGGGAAGTA
rJMSF052J11+          ACAGTATCGAGTGGCTCTAGTGATAAGCAAACACCTACTATTCCTGAAAATGGGGAAGTA
                      ____________________________________________________________
consensus             ACAGTATCGAGTGGCTCTAGTGATAAGCAAACACCTACTATTCCTGAAAATGGGGAAGTA
 
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rJMSF041P08+          AACCATGAAAAACAAATGCATACTTGCAGCAGAGAAAATGGAGTGAACCTTTGGGAGCAA
rJMSF043F20+          AACCATGAAAAACAAATGCATACTTGCAGCAGAGAAAATGGAGTGAACCTTTGGGAGCAA
rJMSF052J11+          AACCATGAAAAACAAATGCATACTTGCAGCAGAGAAAATGGAGTGAACCTTTGGGAGCAA
                      ____________________________________________________________
consensus             AACCATGAAAAACAAATGCATACTTGCAGCAGAGAAAATGGAGTGAACCTTTGGGAGCAA
 
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rJMSF041P08+          CTCAGCGAGGCTTTATCTGCGAAAAAGCAGCAAAGTAGTTGGGGTAAGGTGACTCCAAGC
rJMSF043F20+          CTCAGCGAGGCTTTATCTGCGAAAAAGCAGCAAAGTAGTTGGGGTAAGGTGACTCCAAGC
rJMSF052J11+          CTCAGCGAGGCTTTATCTGCGAAAAAGCAGCAAAGTAGTTGGGGTAAGGTGACTCCAAGC
                      ____________________________________________________________
consensus             CTCAGCGAGGCTTTATCTGCGAAAAAGCAGCAAAGTAGTTGGGGTAAGGTGACTCCAAGC
 
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rJMSF041P08+          AAGATTTCATGGTCATATGAAGCTTCGAGAGGCAGTGGATATGCGCCTAGAAAAAAGGGT
rJMSF043F20+          AAGATTTCATGGTCATATGAAGCTTCGAGAGGCAGTGGATATGCGCCTAGAAAAAAGGGT
rJMSF052J11+          AAGATTTCATGGTCATATGAAGCTTCGAGAGGCAGTGGATATGCGCCTAGAAAAAAGGGT
                      ____________________________________________________________
consensus             AAGATTTCATGGTCATATGAAGCTTCGAGAGGCAGTGGATATGCGCCTAGAAAAAAGGGT
 
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rJMSF041P08+          TTCTCTCGGTGGAAAAATAAGAGATAAATGGTATTCTATGCTCTGGTATGCTCCATCCAT
rJMSF043F20+          TTCTCTCGGTGGAAAAATAAGAGATAAATGGTATTCTATGCTCTGGTATGCTCCATCCAT
rJMSF052J11+          TTCTCTCGGTGGAAAAATAAGAGATAAATGGTATTCTATGCTCTGGTATGCTCCATCCAT
                      ____________________________________________________________
consensus             TTCTCTCGGTGGAAAAATAAGAGATAAATGGTATTCTATGCTCTGGTATGCTCCATCCAT
 
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rJMSF041P08+          CACTTCCAACCTGTGCGAAGGAAATGCCGAGGATGAACTAATTTCACAGCCCAAAACAGA
rJMSF043F20+          CACTTCCAACCTGTGCGAAGGAAATGCCGAGGATGAACTAATTTCACAGCCCAAAACAGA
rJMSF052J11+          CACTTCCAACCTGTGCGAAGGAAATGCCGAGGATGAACTAATTTCACAGCCCAAAACAGA
                      ____________________________________________________________
consensus             CACTTCCAACCTGTGCGAAGGAAATGCCGAGGATGAACTAATTTCACAGCCCAAAACAGA
 
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rJMSF041P08+          ACTACCCAGAACCGAAGTTTTAATGTTCATATTGTCTATTCATGTGATCTAGTTGCCCCA
rJMSF043F20+          ACTACCCAGAACCGAAGTTTTAATGTTCATATTGTCTATTCATGTGATCTAGTTGCCCCA
rJMSF052J11+          ACTACCCAGAACCGAAGTTTTAATGTTCATATTGTCTATTCATGTGATCTAGTTGCCCCA
                      ____________________________________________________________
consensus             ACTACCCAGAACCGAAGTTTTAATGTTCATATTGTCTATTCATGTGATCTAGTTGCCCCA
 
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rJMSF041P08+          ACATGAACAAAAGAACATTATGGATATATATTTATCCAAGTGTGTGGTTTTGTTTCTTCT
rJMSF043F20+          ACATGAACAAAAGAACATTA                                        
rJMSF052J11+          ACATGAACAAAAGAACATTATGGATATATATTTATCCAAGTGTGTGGTTTTGTTTCTTCT
                      ____________________________________________________________
consensus             ACATGAACAAAAGAACATTATGGATATATATTTATCCAAGTGTGTGGTTTTGTTTCTTCT
 
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rJMSF041P08+          CCATTCCTGTATGGGTATGTATGGTACCTCTGTAATCCACTGCTTTCTGGGAAAAC    
rJMSF052J11+          CCATTCCTGTATGGGTATGTATGGTACCTCTGTAATCCACTGCTTTCTGGGAAAACTGTG
                      ____________________________________________________________
consensus             CCATTCCTGTATGGGTATGTATGGTACCTCTGTAATCCACTGCTTTCTGGGAAAACTGTG