Contig 008682:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF051L23Sequence677008682 (2)ref|XP_009775328.1|7e-66PREDICTED: putative cyclin-D6-1 [Nicotiana sylvestris]728008682 (2)ref|XP_010051475.1|1e-40PREDICTED: putative cyclin-D6-1 [Eucalyptus grandis] gb|KCW89470.1| hypothetical

Alignment

This contig is upended


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JMSF051L23-                           AAAAAACAGAGAGCTTCAAGGAGACATCATATCATCATGGAGTT
                      ____________________________________________________________
consensus                             AAAAAACAGAGAGCTTCAAGGAGACATCATATCATCATGGAGTT
 
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JMSF051L23-           TGACCTCGAAAACCCATTGCCGATTTGCCATCATGCCCTTCCCTCCGACACCACCGTTTT
                      ____________________________________________________________
consensus             TGACCTCGAAAACCCATTGCCGATTTGCCATCATGCCCTTCCCTCCGACACCACCGTTTT
 
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JMSF051L23-           ACCTATTCAACGTCGAATCTGATCACATGCCTGCAACGACGTATCATCACACCCTCGTTT
                      ____________________________________________________________
consensus             ACCTATTCAACGTCGAATCTGATCACATGCCTGCAACGACGTATCATCACACCCTCGTTT
 
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JMSF051L23-           CCGCCGCCGCAGATTTTCACTTCTCCGTTCGCCGCGAAACCATCTCTCTCATTCTTCAAC
                      ____________________________________________________________
consensus             CCGCCGCCGCAGATTTTCACTTCTCCGTTCGCCGCGAAACCATCTCTCTCATTCTTCAAC
 
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JMSF051L23-           TCTCCCGTCGCTACGACGCCGTCACATGCTATCTCGCTGTAAACTACGTCGACCGCTTCC
                      ____________________________________________________________
consensus             TCTCCCGTCGCTACGACGCCGTCACATGCTATCTCGCTGTAAACTACGTCGACCGCTTCC
 
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JMSF051L23-           TCTCCTTCCATCCCTTACCGGAAGGGAGGCCATGGATCCTGAAGCTTGTTGCAGCTTCTT
                      ____________________________________________________________
consensus             TCTCCTTCCATCCCTTACCGGAAGGGAGGCCATGGATCCTGAAGCTTGTTGCAGCTTCTT
 
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JMSF051L23-           GTGTCATTTTGGCTTTGAAGATGAGAAAAGCAGAGTTTTCAGTTTCTGATATTCAGCAAG
rJMSF051L23+                                                              TCAGCAAG
                      ____________________________________________________________
consensus             GTGTCATTTTGGCTTTGAAGATGAGAAAAGCAGAGTTTTCAGTTTCTGATATTCAGCAAG
 
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JMSF051L23-           ACAGCGGTGTGATATTTGATTTAGAAA-CAATCGAGAGAATGGAGATGTTGATTCTGGGA
rJMSF051L23+          ACAGCGGTGTGATATTTGATTTAGAAACCAATCGAGAGAATGGAGATGTTGATTCTGGGA
                      ____________________________________________________________
consensus             ACAGCGGTGTGATATTTGATTTAGAAACCAATCGAGAGAATGGAGATGTTGATTCTGGGA
 
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JMSF051L23-           ACATTAAAATGGCGAATGCGGTCGGTGACTCCATTCTGTTTCCTTAATTTCTTCATCTCA
rJMSF051L23+          ACATTAAAATGGCGAATGCGGTCGGTGACTCCATTCTGTTTCCTTAATTTCTTCATCTCA
                      ____________________________________________________________
consensus             ACATTAAAATGGCGAATGCGGTCGGTGACTCCATTCTGTTTCCTTAATTTCTTCATCTCA
 
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JMSF051L23-           TTCTTCAAATTCAAAGAGCCACCATTGCGCCAAGCTCTCAAGGCCAGGGCGACAGAGATC
rJMSF051L23+          TTCTTCAAATTCAAAGAGCCACCATTGCGCCAAGCTCTCAAGGCCAGGGCGACAGAGATC
                      ____________________________________________________________
consensus             TTCTTCAAATTCAAAGAGCCACCATTGCGCCAAGCTCTCAAGGCCAGGGCGACAGAGATC
 
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JMSF051L23-           ATCTTCAAATCACAAACTGAAATCAATTTACTCAAGTTCAGGCCATCTATAATCTCTGCA
rJMSF051L23+          ATCTTCAAATCACAAACTGAAATCAATTTACTCAAGTTCAGGCCATCTATAATCTCTGCA
                      ____________________________________________________________
consensus             ATCTTCAAATCACAAACTGAAATCAATTTACTCAAGTTCAGGCCATCTATAATCTCTGCA
 
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JMSF051L23-           TCAGCTCTTCTCTCCGCCTGCGATGAACTCTTCC                          
rJMSF051L23+          TCAGCTCTTCTCTCCGCCTGCGATGAACTCTTCCCCCTACAGTTTCATTGCTACAGAAAT
                      ____________________________________________________________
consensus             TCAGCTCTTCTCTCCGCCTGCGATGAACTCTTCCCCCTACAGTTTCATTGCTACAGAAAT
 
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rJMSF051L23+          GCAATCTTAAACAGCCCATATGTAAATACTGAAAATTTGGTAAGCTGTTACGGGGTGATG
                      ____________________________________________________________
consensus             GCAATCTTAAACAGCCCATATGTAAATACTGAAAATTTGGTAAGCTGTTACGGGGTGATG
 
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rJMSF051L23+          CAAGAGATTGCAAGGAAGGGGTACGAGTCAGTGATGGAGAGCAATATGGTATCGAGCTCG
                      ____________________________________________________________
consensus             CAAGAGATTGCAAGGAAGGGGTACGAGTCAGTGATGGAGAGCAATATGGTATCGAGCTCG
 
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rJMSF051L23+          TCGACGCCGGTGAACGTTCTTGATTTGCAATGCTGGAGTTGGGAAAACGACGGGAGCGAC
                      ____________________________________________________________
consensus             TCGACGCCGGTGAACGTTCTTGATTTGCAATGCTGGAGTTGGGAAAACGACGGGAGCGAC
 
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rJMSF051L23+          ACGACGGCGGCAGGAGGTGCAGAAAACAGTGGCTGCAGTGGCGGGGAGGTGGTGGCCACC
                      ____________________________________________________________
consensus             ACGACGGCGGCAGGAGGTGCAGAAAACAGTGGCTGCAGTGGCGGGGAGGTGGTGGCCACC
 
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rJMSF051L23+          GGGCGCGAAAGGGACTTGAAACGGCGAAAATTTGATCGGTTCAGCCTGCAGGGCAGATGC
                      ____________________________________________________________
consensus             GGGCGCGAAAGGGACTTGAAACGGCGAAAATTTGATCGGTTCAGCCTGCAGGGCAGATGC
 
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rJMSF051L23+          AACAAAAATGGTAGCAGCAGCAGCAGCTAAGATGAGGTGCGTGATGCATAGAGACAGACC
                      ____________________________________________________________
consensus             AACAAAAATGGTAGCAGCAGCAGCAGCTAAGATGAGGTGCGTGATGCATAGAGACAGACC
 
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rJMSF051L23+          CCACAGCGCCTTAGGAGTCTGGCCCATTCGAGAGCGACCCTAGACTGGAATTTCATCGAA
                      ____________________________________________________________
consensus             CCACAGCGCCTTAGGAGTCTGGCCCATTCGAGAGCGACCCTAGACTGGAATTTCATCGAA