Contig 008678:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF051G10Sequence661008678 (2)ref|XP_009789158.1|1e-109PREDICTED: protein HGH1 homolog isoform X2 [Nicotiana sylvestris]741008678 (2)ref|XP_004238791.1|7e-81PREDICTED: protein HGH1 homolog [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF051G10-                                                     GACGTTTGCGGCTGTGAA
                      ____________________________________________________________
consensus                                                       GACGTTTGCGGCTGTGAA
 
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JMSF051G10-           GGAAATCATCAATGGCGACTGAACTTGAAGAACTCATTGGCTTCCTCTCATCTCCTTCTC
                      ____________________________________________________________
consensus             GGAAATCATCAATGGCGACTGAACTTGAAGAACTCATTGGCTTCCTCTCATCTCCTTCTC
 
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JMSF051G10-           CCCCCATCAAGAAAGCGGCTGTAGATATTCTTCGTGACTATACGGGGTCCGACGATGGGC
                      ____________________________________________________________
consensus             CCCCCATCAAGAAAGCGGCTGTAGATATTCTTCGTGACTATACGGGGTCCGACGATGGGC
 
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JMSF051G10-           TGCAATCTCTGGGAAGATACTCCAGCATTGTGCTTCCGCCTTTGTCACGCCTGCTCGGTG
                      ____________________________________________________________
consensus             TGCAATCTCTGGGAAGATACTCCAGCATTGTGCTTCCGCCTTTGTCACGCCTGCTCGGTG
 
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JMSF051G10-           AAAACAAGGTGGTTTCTGAACCTGGAGCACAAGCTCTTGTGAATTTGTCACAAAAGCCAG
                      ____________________________________________________________
consensus             AAAACAAGGTGGTTTCTGAACCTGGAGCACAAGCTCTTGTGAATTTGTCACAAAAGCCAG
 
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JMSF051G10-           AGTTAGCAGGTAAGATGGTCGAGATGAGTATGGTCAAAATGGTTATGGAGGTTCTCTATA
                      ____________________________________________________________
consensus             AGTTAGCAGGTAAGATGGTCGAGATGAGTATGGTCAAAATGGTTATGGAGGTTCTCTATA
 
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JMSF051G10-           AGAAGGATTGTGAAATTATTCATTTTCTGGTTATGCTTCTTGTCAATCTCACACAATTGG
                      ____________________________________________________________
consensus             AGAAGGATTGTGAAATTATTCATTTTCTGGTTATGCTTCTTGTCAATCTCACACAATTGG
 
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JMSF051G10-           ATGCCGGTGTTGACTCCCTTATTAAGTCGGGCGATGACAAGATACATGGCCTATATGTCA
                      ____________________________________________________________
consensus             ATGCCGGTGTTGACTCCCTTATTAAGTCGGGCGATGACAAGATACATGGCCTATATGTCA
 
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JMSF051G10-           TGAAGCTCGTGAGGTCATTCTGTTCATCCTCCAGTGAGAATAAAGGTGATCCTTTTGAGC
                      ____________________________________________________________
consensus             TGAAGCTCGTGAGGTCATTCTGTTCATCCTCCAGTGAGAATAAAGGTGATCCTTTTGAGC
 
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JMSF051G10-           ATGTGGCTTCTGTATTGGTGAACATTTCAAAAAGAGAAGAAGGGAGGAAACTTCTGCTGG
                      ____________________________________________________________
consensus             ATGTGGCTTCTGTATTGGTGAACATTTCAAAAAGAGAAGAAGGGAGGAAACTTCTGCTGG
 
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JMSF051G10-           ACCCCAAGCGAGGACTTCTGAAGCAGATTATTCGGCAGTTTGATTCAGGAAGCATGCTGC
rJMSF051G10+                                                 TTGATTCAGGAAGCATGCTGC
                      ____________________________________________________________
consensus             ACCCCAAGCGAGGACTTCTGAAGCAGATTATTCGGCAGTTTGATTCAGGAAGCATGCTGC
 
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JMSF051G10-           GAAAGAAAGGGGTCTCCGGAACTATTCGTAACTGCTGCTTTGA                 
rJMSF051G10+          GAAAGAAAGGGGTCTCCGGAACTATTCGTAACTGCTGCTTTGAAGCTGAAAATCAGCTAC
                      ____________________________________________________________
consensus             GAAAGAAAGGGGTCTCCGGAACTATTCGTAACTGCTGCTTTGAAGCTGAAAATCAGCTAC
 
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rJMSF051G10+          AAAATTTGCTTTTAATTTCAGAGTTTCTATGGCCAACTCTCCTATTGCCAGTTGCTGGAA
                      ____________________________________________________________
consensus             AAAATTTGCTTTTAATTTCAGAGTTTCTATGGCCAACTCTCCTATTGCCAGTTGCTGGAA
 
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rJMSF051G10+          ATAAGATCTATACTGAGCAAGACACATCTAAAATGCCACTTGAGCTTGCAAGTGCACTTT
                      ____________________________________________________________
consensus             ATAAGATCTATACTGAGCAAGACACATCTAAAATGCCACTTGAGCTTGCAAGTGCACTTT
 
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rJMSF051G10+          CCATTGAGCGCGAACCTGTGACTGATCCTGAAATTCGTGTACAATCATTGGAAGCTATTT
                      ____________________________________________________________
consensus             CCATTGAGCGCGAACCTGTGACTGATCCTGAAATTCGTGTACAATCATTGGAAGCTATTT
 
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rJMSF051G10+          ATTTACTCGTCTTACAGGAGGCCGGTCGAAGTGCATTTTGGTCCGTGAATGGTCCGAGGA
                      ____________________________________________________________
consensus             ATTTACTCGTCTTACAGGAGGCCGGTCGAAGTGCATTTTGGTCCGTGAATGGTCCGAGGA
 
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rJMSF051G10+          TACTACAAGTAGGGTATGAAGACGAAGAAGATCCAAAAGCAATGGAAGCATACGAGCGAG
                      ____________________________________________________________
consensus             TACTACAAGTAGGGTATGAAGACGAAGAAGATCCAAAAGCAATGGAAGCATACGAGCGAG
 
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rJMSF051G10+          TTGGTTCCTTGCTGATCCAAGAGGGTAGCATTGGGGAAGAAGCATCAACGGCCAAATAAC
                      ____________________________________________________________
consensus             TTGGTTCCTTGCTGATCCAAGAGGGTAGCATTGGGGAAGAAGCATCAACGGCCAAATAAC
 
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rJMSF051G10+          AGCCAAAATCTCGCCGGTCATGTGGTTTAAGTATATGGAAACCATTACTTCTGATGGATA
                      ____________________________________________________________
consensus             AGCCAAAATCTCGCCGGTCATGTGGTTTAAGTATATGGAAACCATTACTTCTGATGGATA
 
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rJMSF051G10+          AATGCCCAGTCTACTGTCCAGGTATTGACGAGTATAGAAGCCCCCACATGAAACACAACC
                      ____________________________________________________________
consensus             AATGCCCAGTCTACTGTCCAGGTATTGACGAGTATAGAAGCCCCCACATGAAACACAACC
 
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rJMSF051G10+          TTTCATAGTGTTGATTGGAGAAAGGGTATATTAATGCATATCATGAAATGGAACCAATCT
                      ____________________________________________________________
consensus             TTTCATAGTGTTGATTGGAGAAAGGGTATATTAATGCATATCATGAAATGGAACCAATCT
 
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rJMSF051G10+          TTGTATTGTAGGTTGATTTGTAGCATTTTATGATGAGGGTATAGTAATGCATACTGTGAA
                      ____________________________________________________________
consensus             TTGTATTGTAGGTTGATTTGTAGCATTTTATGATGAGGGTATAGTAATGCATACTGTGAA
 
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rJMSF051G10+          CATGAACCAATCAACCTAACCATGTCTTGTGGCTGTGGTTTGTAGCGATGCATAAAATTT
                      ____________________________________________________________
consensus             CATGAACCAATCAACCTAACCATGTCTTGTGGCTGTGGTTTGTAGCGATGCATAAAATTT