| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007K01 | Sequence | 457 | 011658 (4) | ref|XP_004232573.1| | 7e-60 | PREDICTED: proton-coupled amino acid transporter 3-like [Solanum lycopersicum] | 754 | 008673 (3) | ref|XP_009801334.1| | 3e-78 | PREDICTED: proton-coupled amino acid transporter 3-like [Nicotiana sylvestris] |
| JMSF047B07 | Sequence | 727 | 011658 (4) | ref|XP_009588847.1| | 1e-113 | PREDICTED: proton-coupled amino acid transporter 3-like [Nicotiana tomentosifor | 621 | 008673 (3) | ref|XP_009801334.1| | 2e-66 | PREDICTED: proton-coupled amino acid transporter 3-like [Nicotiana sylvestris] |
| JMSF050B03 | Sequence | 688 | 011658 (4) | ref|XP_009588847.1| | 1e-120 | PREDICTED: proton-coupled amino acid transporter 3-like [Nicotiana tomentosifor | 744 | 008673 (3) | ref|XP_009801334.1| | 3e-93 | PREDICTED: proton-coupled amino acid transporter 3-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF007K01+ TTCTGCAGGCCTTTGG
____________________________________________________________
consensus TTCTGCAGGCCTTTGG
. : . : . : . : . : . :
rJMSF007K01+ GGGGTTCACTGTGTTCTTCTATGGCCTTGGAGTGGCTGTGTATGCCTTTGAAGGGATAGG
rJMSF050B03+ TGTGTATGCCTTTGAAGGGATAGG
____________________________________________________________
consensus GGGGTTCACTGTGTTCTTCTATGGCCTTGGAGTGGCTGTGTATGCCTTTGAAGGGATAGG
. : . : . : . : . : . :
rJMSF007K01+ AATGGTGTTGCCATTGGAATCAGAGATGAGGGACAAGGCTAAATTTGGGAGAGTCTTGGG
rJMSF050B03+ AATGGTGTTGCCATTGGAATCAGAGATGAGGGACAAGGCTAAATTTGGGAGAGTCTTGGG
____________________________________________________________
consensus AATGGTGTTGCCATTGGAATCAGAGATGAGGGACAAGGCTAAATTTGGGAGAGTCTTGGG
. : . : . : . : . : . :
rJMSF007K01+ ATTCTCAATGGCCCTCATTTCTGTCATGTATGGAGCTTTTGGAATCTTGGGTTACATGGC
rJMSF047B07+ TTTGGAATCTTGGGTTACATGGC
rJMSF050B03+ ATTCTCAATGGCCCTCATTTCTGTCATGTATGGAGCTTTTGGAATCTTGGGTTACATGGC
____________________________________________________________
consensus ATTCTCAATGGCCCTCATTTCTGTCATGTATGGAGCTTTTGGAATCTTGGGTTACATGGC
. : . : . : . : . : . :
rJMSF007K01+ ATTCGGGGACGAAACAAACGATATAATCACCTCGAATATGGGGCGGGGAATCGTGAGTAG
rJMSF047B07+ ATTCGGGGACGAAACAAACGATATAATCACCTCGAATATGGGGCGGGGAATCGTGAGTAG
rJMSF050B03+ ATTCGGGGACGAAACAAACGATATAATCACCTCGAATATGGGGCGGGGAATCGTGAGTAG
____________________________________________________________
consensus ATTCGGGGACGAAACAAACGATATAATCACCTCGAATATGGGGCGGGGAATCGTGAGTAG
. : . : . : . : . : . :
rJMSF007K01+ CATAGTCCAAATCGGACTATGCATCAACCTGTTCTTCACATTCCCGCTAATGATGAACCC
rJMSF047B07+ CATAGTCCAAATCGGACTATGCATCAACCTGTTCTTCACATTCCCGCTAATGATGAACCC
rJMSF050B03+ CATAGTCCAAATCGGACTATGCATCAACCTGTTCTTCACATTCCCGCTAATGATGAACCC
____________________________________________________________
consensus CATAGTCCAAATCGGACTATGCATCAACCTGTTCTTCACATTCCCGCTAATGATGAACCC
. : . : . : . : . : . :
rJMSF007K01+ AGTGTACGAAGTCCTCGAGAGGCGAGTGACCCATGGGCAGACAT-TTTGTTGCTGAGATG
rJMSF047B07+ AGTGTACGAAGTCCTCGAGAGGCGAGTGACCCATGGGCAGACATGTTTGTTGCTGAGATG
rJMSF050B03+ AGTGTACGAAGTCCTCGAGAGGCGAGTGACCCATGGGCAGACATGTTTGTTGCTGAGATG
____________________________________________________________
consensus AGTGTACGAAGTCCTCGAGAGGCGAGTGACCCATGGGCAGACATGTTTGTTGCTGAGATG
. : . : . : . : . : . :
rJMSF007K01+ GGGAATGGTGTTTGGGGTGAGTTTGATGGCTCTGCTAATCCCAAACTTTGCGGATTTCTT
rJMSF047B07+ GGGAATGGTGTTTGGGGNGAGTTTGATGGCTCTGCTAATCCCAAACTTTGCGGATTTCTT
rJMSF050B03+ GGGAATGGTGTTTGGGGTGAGTTTGATGGCTCTGCTAATCCCAAACTTTGCGGATTTCTT
____________________________________________________________
consensus GGGAATGGTGTTTGGGGTGAGTTTGATGGCTCTGCTAATCCCAAACTTTGCGGATTTCTT
. : . : . : . : . : . :
rJMSF007K01+ GTCACTGGTGGGGAGCAGTGTGTGCATTGTTTTAGGGTTTGTGTTGCCTGCTTTGTTTCA
rJMSF047B07+ GTCACTGGTGGGGAGCAGTGTGTGCATTGTTTTAGGGTTTGTGTTGCCTGCTTTGTTTCA
rJMSF050B03+ GTCACTGGTGGGGAGCAGTGTGTGCATTGTTTTAGGGTTTGTGTTGCCTGCTTTGTTTCA
____________________________________________________________
consensus GTCACTGGTGGGGAGCAGTGTGTGCATTGTTTTAGGGTTTGTGTTGCCTGCTTTGTTTCA
. : . : . : . : . : . :
rJMSF007K01+ CTTGATTGTGTTCAAGCAGGAATTGGGGACTGTTGGATTGGTGTGTGATGGAGCACTCAC
rJMSF047B07+ CTTGATTGTGTTCAAGCAGGAATTGGGGACTGTTGGATTGGTGTGTGATGGAGCACTCAC
rJMSF050B03+ CTTGATTGTGTTCAAGCAGGAATTGGGGACTGTTGGATTGGTGTGTGATGGAGCACTCAC
____________________________________________________________
consensus CTTGATTGTGTTCAAGCAGGAATTGGGGACTGTTGGATTGGTGTGTGATGGAGCACTCAC
. : . : . : . : . : . :
rJMSF007K01+ TGTGTTTGGCATCATTTTTGCTGTTTATGGGACTTGGTCTTCTCTGCTTGAGATCTTTGC
rJMSF047B07+ TGTGTTTGGCATCATTTTTGCTGTTTATGGGACTTGGTCTTCTCTGCTTGAGATCTTTGC
rJMSF050B03+ TGTGTTTGGCATCATTTTTGCTGTTTATGGGACTTGGTCTTCTCTGCTTGAGATCTTTGC
____________________________________________________________
consensus TGTGTTTGGCATCATTTTTGCTGTTTATGGGACTTGGTCTTCTCTGCTTGAGATCTTTGC
. : . : . : . : . : . :
rJMSF007K01+ AACTAAGGCTTAAGCTATTGTAATTATGTGAGTTGATGATTATCAGTTTTTGTTTTACAT
rJMSF047B07+ AACTAAGGCTTAAGCTATTGTAATTATGTGAGTTGATGATTATCAGTTTTTGTTTTACAT
rJMSF050B03+ AACTAAGGCTTAAGCTATTGTAATTATGTGAGTTGATGATTATCAGTTTTTGTTTTACAT
____________________________________________________________
consensus AACTAAGGCTTAAGCTATTGTAATTATGTGAGTTGATGATTATCAGTTTTTGTTTTACAT
. : . : . : . : . : . :
rJMSF007K01+ ATAGCTGTGTAAAAAGTGTGCATCTTGCTCTATACAGTTGTGAAAATTGTATCATATGTT
rJMSF047B07+ ATAGCTGTGTAAAAAGTGTGCATCTTGCTCTATACAGTTGTGAAAATTGTATCATATGTT
rJMSF050B03+ ATAGCTGTGTAAAAAGTGTGCATCTTGCTCTATACAGTTGTGAAAATTGTATCATATGTT
____________________________________________________________
consensus ATAGCTGTGTAAAAAGTGTGCATCTTGCTCTATACAGTTGTGAAAATTGTATCATATGTT
. : . : . : . : . : . :
rJMSF007K01+ TGCAGACTTTGAATCT
rJMSF047B07+ TGCAGACTTTGAATCTTGTAGTGTGGTTACTTCTTGTTT
rJMSF050B03+ TGCAGACTTTGAATCTTGTAGTGTGGTTACTTTTTGTTTTGTACCATTTTTACCTTACAC
____________________________________________________________
consensus TGCAGACTTTGAATCTTGTAGTGTGGTTACTTTTTGTTTTGTACCATTTTTACCTTACAC