| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011H21 | Sequence | 563 | 002335 (11) | ref|XP_006382987.1| | 1e-112 | hypothetical protein POPTR_0005s10340g [Populus trichocarpa] ref|XP_006382988.1| | 692 | 008672 (9) | sp|P49315.1|CATA1_NICPL | 2e-98 | RecName: Full=Catalase isozyme 1, partial [Nicotiana plumbaginifolia] emb|CAA854 |
| JMFF018E03 | Sequence | 577 | 002335 (11) | gb|AIA61608.1| | 9e-119 | catalase [Gynostemma pentaphyllum] | 785 | 008672 (9) | gb|AFU48609.1| | 6e-136 | catalase 1, partial [Nicotiana benthamiana] |
| JMFF031C05 | Sequence | 542 | 002335 (11) | gb|AIA61608.1| | 3e-109 | catalase [Gynostemma pentaphyllum] | 766 | 008672 (9) | emb|CCP37650.1| | 5e-130 | catalase-1 [Nicotiana tabacum] |
| JMSF014M16 | Sequence | 461 | 002335 (11) | gb|KEH36313.1| | 5e-87 | catalase heme-binding enzyme [Medicago truncatula] | 762 | 008672 (9) | emb|CCP37650.1| | 2e-128 | catalase-1 [Nicotiana tabacum] |
| JMSF020B05 | Sequence | 697 | 002335 (11) | gb|KHG25152.1| | 1e-147 | Catalase isozyme 1 [Gossypium arboreum] | 805 | 008672 (9) | gb|ACL27272.1| | 1e-132 | catalase [Nicotiana benthamiana] |
| JMSF026K03 | Sequence | 695 | 002335 (11) | gb|KHG25152.1| | 1e-146 | Catalase isozyme 1 [Gossypium arboreum] | 723 | 008672 (9) | gb|AFU48609.1| | 1e-131 | catalase 1, partial [Nicotiana benthamiana] |
| JMSF033I02 | Sequence | 718 | 002335 (11) | gb|AIA61608.1| | 4e-153 | catalase [Gynostemma pentaphyllum] | 645 | 008672 (9) | sp|P49315.1|CATA1_NICPL | 5e-89 | RecName: Full=Catalase isozyme 1, partial [Nicotiana plumbaginifolia] emb|CAA854 |
| JMSF037F06 | Sequence | 650 | 002335 (11) | gb|AIA61608.1| | 7e-139 | catalase [Gynostemma pentaphyllum] | 716 | 008672 (9) | emb|CCP37650.1| | 2e-115 | catalase-1 [Nicotiana tabacum] |
| JMSF050A16 | Sequence | 716 | 002335 (11) | gb|AIA61608.1| | 3e-152 | catalase [Gynostemma pentaphyllum] | 676 | 008672 (9) | sp|P49315.1|CATA1_NICPL | 7e-89 | RecName: Full=Catalase isozyme 1, partial [Nicotiana plumbaginifolia] emb|CAA854 |
This contig is upended
. : . : . : . : . : . :
rJMFF018E03+ CTCGACGTGACCAAGACCTG
rJMSF020B05+ CCTG
____________________________________________________________
consensus CTCGACGTGACCAAGACCTG
. : . : . : . : . : . :
rJMFF018E03+ GCCGGAGGATCTGGTGCCGTTGCAGCCGGTGGGTCGCCTGGTTTTGAACAAGAACATTGA
rJMFF031C05+ CCGGAGGATCTGGTGCCGTTGCAGCCGGTGGGTCGCCTGGTTTTGAACAAGAACATTGA
rJMSF014M16+ AGGATCTGGTGCCGTTGCAGCCGGTGGGTCGCCTGGTTTTGAACAAGAACATTGA
rJMSF037F06+ A
rJMSF026K03+ CCGGAGGATCTGGTGCCGTTGCAGCCGGTGGGTCGCCTGGTTTTGAACAAGAACATTGA
rJMSF020B05+ GCCGGAGGATCTGGTGCCGTTGCAGCCGGTGGGTCGCCTGGTTTTGAACAAGAACATTGA
____________________________________________________________
consensus GCCGGAGGATCTGGTGCCGTTGCAGCCGGTGGGTCGCCTGGTTTTGAACAAGAACATTGA
. : . : . : . : . : . :
rJMFF018E03+ TAATTTCTTCAACGAGAACGAGCAGCTGGCATTTTGCCCGTCGATTGTGGTGCCCGGAAT
rJMFF031C05+ TAATTTCTTCAACGAGAACGAGCAGCTGGCATTTTGCCCGTCGATTGTGGTGCCCGGAAT
rJMSF014M16+ TAATTTCTTCAACGAGAACGAGCAGCTGGCATTTTGCCCGTCGATTGTGGTGCCCGGAAT
rJMSF037F06+ TAATTTCTTCAACGAGAACGAGCAGCTGGCATTTTGCCCGTCGATTGTGGTGCCCGGAAT
rJMSF026K03+ TAATTTCTTCAACGAGAACGAGCAGCTGGCATTTTGCCCGTCGATTGTGGTGCCCGGAAT
rJMSF020B05+ TAATTTCTTCAACGAGAACGAGCAGCTGGCATTTTGCCCGTCGATTGTGGTGCCCGGAAT
____________________________________________________________
consensus TAATTTCTTCAACGAGAACGAGCAGCTGGCATTTTGCCCGTCGATTGTGGTGCCCGGAAT
. : . : . : . : . : . :
rJMFF018E03+ CTATTATTCCGACGATAAGCTGCTGCAGACTCGGATCTTCTCCTATTCCGATACCCAGAG
rJMFF031C05+ CTATTATTCCGACGATAAGCTGCTGCAGACTCGGATCTTCTCCTATTCCGATACCCAGAG
rJMSF014M16+ CTATTATTCCGACGATAAGCTGCTGCAGACTCGGATCTTCTCCTATTCCGATACCCAGAG
rJMSF037F06+ CTATTATTCCGACGATAAGCTGCTGCAGACTCGGATCTTCTCCTATTCCGATACCCAGAG
rJMSF026K03+ CTATTATTCCGACGATAAGCTGCTGCAGACTCGGATCTTCTCCTATTCCGATACCCAGAG
rJMSF020B05+ CTATTATTCCGACGATAAGCTGCTGCAGACTCGGATCTTCTCCTATTCCGATACCCAGAG
rJMSF033I02+ TATTCCGATACCCAGAG
rJMFF011H21+ TTATTCCGACGATAAGCTGCTGCAGACTCGGATCTTCTCCTATTCCGATACCCAGAG
rJMSF050A16+ TATTCCGATACCCAGAG
____________________________________________________________
consensus CTATTATTCCGACGATAAGCTGCTGCAGACTCGGATCTTCTCCTATTCCGATACCCAGAG
. : . : . : . : . : . :
rJMFF018E03+ GTACCGGCTCGGCCCCAACTATCTGCAGCTGCCGGCGAATGCTCCCAAGTGTTCCATGCA
rJMFF031C05+ GTACCGGCTCGGCCCCAACTATCTGCAGCTGCCGGCGAATGCTCCCAAGTGTTCCATGCA
rJMSF014M16+ GTACCGGCTCGGCCCCAACTATCTGCAGCTGCCGGCGAATGCTCCCAAGTGTTCCATGCA
rJMSF037F06+ GTACCGGCTCGGCCCCAACTATCTGCAGCTGCCGGCGAATGCTCCCAAGTGTTCCATGCA
rJMSF026K03+ GTACCGGCTCGGCCCCAACTATCTGCAGCTGCCGGCGAATGCTCCCAAGTGTTCCATGCA
rJMSF020B05+ GTACCGGCTCGGCCCCAACTATCTGCAGCTGCCGGCGAATGCTCCCAAGTGTTCCATGCA
rJMSF033I02+ GTACCGGCTCGGCCCCAACTATCTGCAGCTGCCGGCGAATGCTCCCAAGTGTTCCATGCA
rJMFF011H21+ GTACCGGCTCGGCCCCAACTATCTGCAGCTGCCGGCGAATGCTCCCAAGTGTTCCATGCA
rJMSF050A16+ GTACCGGCTCGGCCCCAACTATCTGCAGCTGCCGGCGAATGCTCCCAAGTGTTCCATGCA
____________________________________________________________
consensus GTACCGGCTCGGCCCCAACTATCTGCAGCTGCCGGCGAATGCTCCCAAGTGTTCCATGCA
. : . : . : . : . : . :
rJMFF018E03+ CAACAATCACTATGATGGGTCCATGAACTTCATGCACAGAGACGAAGAGATTGATTACTT
rJMFF031C05+ CAACAATCACTATGATGGGTCCATGAACTTCATGCACAGAGACGAAGAGATTGATTACTT
rJMSF014M16+ CAACAATCACTATGATGGGTCCATGAACTTCATGCACAGAGACGAAGAGATTGATTACTT
rJMSF037F06+ CAACAATCACTATGATGGGTCCATGAACTTCATGCACAGAGACGAAGAGATTGATTACTT
rJMSF026K03+ CAACAATCACTATGATGGGTCCATGAACTTCATGCACAGAGACGAAGAGATTGATTACTT
rJMSF020B05+ CAACAATCACTATGATGGGTCCATGAACTTCATGCACAGAGACGAAGAGATTGATTACTT
rJMSF033I02+ CAACAATCACTATGATGGGTCCATGAACTTCATGCACAGAGACGAAGAGATTGATTACTT
rJMFF011H21+ CAACAATCACTATGATGGGTCCATGAACTTCATGCACAGAGACGAAGAGATTGATTACTT
rJMSF050A16+ CAACAATCACTATGATGGGTCCATGAACTTCATGCACAGAGACGAAGAGATTGATTACTT
____________________________________________________________
consensus CAACAATCACTATGATGGGTCCATGAACTTCATGCACAGAGACGAAGAGATTGATTACTT
. : . : . : . : . : . :
rJMFF018E03+ CCCTTCGAGGTATGATCCTGTGAGGCACGCTGAGAGGTACCCAACTCCTGCTGCAGTCTG
rJMFF031C05+ CCCTTCGAGGTATGATCCTGTGAGGCACGCTGAGAGGTACCCAACTCCTGCTGCAGTCTG
rJMSF014M16+ CCCTTCGAGGTATGATCCTGTGAGGCACGCTGAGAGGTACCCAACTCCTGCTGCAGTCTG
rJMSF037F06+ CCCTTCGAGGTATGATCCTGTGAGGCACGCTGAGAGGTACCCAACTCCTGCTGCAGTCTG
rJMSF026K03+ CCCTTCGAGGTATGATCCTGTGAGGCACGCTGAGAGGTACCCAACTCCTGCTGCAGTCTG
rJMSF020B05+ CCCTTCGAGGTATGATCCTGTGAGGCACGCTGAGAGGTACCCAACTCCTGCTGCAGTCTG
rJMSF033I02+ CCCTTCGAGGTATGATCCTGTGAGGCACGCTGAGAGGTACCCAACTCCTGCTGCAGTCTG
rJMFF011H21+ CCCTTCGAGGTATGATCCTGTGAGGCACGCTGAGAGGTACCCAACTCCTGCTGCAGTCTG
rJMSF050A16+ CCCTTCGAGGTATGATCCTGTGAGGCACGCTGAGAGGTACCCAACTCCTGCTGCAGTCTG
____________________________________________________________
consensus CCCTTCGAGGTATGATCCTGTGAGGCACGCTGAGAGGTACCCAACTCCTGCTGCAGTCTG
. : . : . : . : . : . :
rJMFF018E03+ CACTGGCAAACGTGAGAAGTGTGTGATTGGGAAGGAGAACAATTTCAAGCAACCTGGGGA
rJMFF031C05+ CACTGGCAAACGTGAGAAGTGTGTGATTGGGAAGGAGAACAATTTCAAGCAACCTGGGGA
rJMSF014M16+ CACTGGCAAACGTGAGAAGTGTGTGATTGGGAAGGAGAACAATTTCAAGCAACCTGGGGA
rJMSF037F06+ CACTGGCAAACGTGAGAAGTGTGTGATTGGGAAGGAGAACAATTTCAAGCAACCTGGGGA
rJMSF026K03+ CACTGGCAAACGTGAGAAGTGTGTGATTGGGAAGGAGAACAATTTCAAGCAACCTGGGGA
rJMSF020B05+ CACTGGCAAACGTGAGAAGTGTGTGATTGGGAAGGAGAACAATTTCAAGCAACCTGGGGA
rJMSF033I02+ CACTGGCAAACGTGAGAAGTGTGTGATTGGGAAGGAGAACAATTTCAAGCAACCTGGGGA
rJMFF011H21+ CACTGGCAAACGTGAGAAGTGTGTGATTGGGAAGGAGAACAATTTCAAGCAACCTGGGGA
rJMSF050A16+ CACTGGCAAACGTGAGAAGTGTGTGATTGGGAAGGAGAACAATTTCAAGCAACCTGGGGA
____________________________________________________________
consensus CACTGGCAAACGTGAGAAGTGTGTGATTGGGAAGGAGAACAATTTCAAGCAACCTGGGGA
. : . : . : . : . : . :
rJMFF018E03+ GAGATACCGTTCATTCTCACCAGACAGGCAGGAGAGGTTTATCTGCCGCTGGGTTGATGC
rJMFF031C05+ GAGATACCGTTCATTCTCACCAGACAGGCAGGAGAGGTTTATCTGCCGCTGGGTTGATGC
rJMSF014M16+ GAGATACCGTTCATTCTCACCAGACAGGCAGGAGAGGTTTATCTGCCGCTGGGTTGATGC
rJMSF037F06+ GAGATACCGTTCATTCTCACCAGACAGGCAGGAGAGGTTTATCTGCCGCTGGGTTGATGC
rJMSF026K03+ GAGATACCGTTCATTCTCACCAGACAGGCAGGAGAGGTTTATCTGCCGCTGGGTTGATGC
rJMSF020B05+ GAGATACCGTTCATTCTCACCAGACAGGCAGGAGAGGTTTATCTGCCGCTGGGTTGATGC
rJMSF033I02+ GAGATACCGTTCATTCTCACCAGACAGGCAGGAGAGGTTTATCTGCCGCTGGGTTGATGC
rJMFF011H21+ GAGATACCGTTCATTCTCACCAGACAGGCAGGAGAGGTTTATCTGCCGCTGGGTTGATGC
rJMSF050A16+ GAGATACCGTTCATTCTCACCAGACAGGCAGGAGAGGTTTATCTGCCGCTGGGTTGATGC
____________________________________________________________
consensus GAGATACCGTTCATTCTCACCAGACAGGCAGGAGAGGTTTATCTGCCGCTGGGTTGATGC
. : . : . : . : . : . :
rJMFF018E03+ CTTGTCTGATCCAAGAATTACTTATGAGATTCGCAGTATTTGGATCTCGTACTGGTCTCA
rJMFF031C05+ CTTGTCTGATCCAAGAATTACTTATGAGATTCGCAGTATTTGGATCTCGTACTGGTCTCA
rJMSF014M16+ CTTGTCTGATCCAAGAATTACTTATGAGATTCGCAGTATTTGGATCTCGTACTGGTCTCA
rJMSF037F06+ CTTGTCTGATCCAAGAATTACTTATGAGATTCGCAGTATTTGGATCTCGTACTGGTCTCA
rJMSF026K03+ CTTGTCTGATCCAAGAATTACTTATGAGATTCGCAGTATTTGGATCTCGTACTGGTCTCA
rJMSF020B05+ CTTGTCTGATCCAAGAATTACTTATGAGATTCGCAGTATTTGGATCTCGTACTGGTCTCA
rJMSF033I02+ CTTGTCTGATCCAAGAATTACTTATGAGATTCGCAGTATTTGGATCTCGTACTGGTCTCA
rJMFF011H21+ CTTGTCTGATCCAAGAATTACTTATGAGATTCGCAGTATTTGGATCTCGTACTGGTCTCA
rJMSF050A16+ CTTGTCTGATCCAAGAATTACTTATGAGATTCGCAGTATTTGGATCTCGTACTGGTCTCA
____________________________________________________________
consensus CTTGTCTGATCCAAGAATTACTTATGAGATTCGCAGTATTTGGATCTCGTACTGGTCTCA
. : . : . : . : . : . :
rJMFF018E03+ GGCTGATAAATCCTTGGGACAGAAGATTGCTTCCAGGCTGAACATGAGGCCAAACATGTG
rJMFF031C05+ GGCTGATAAATCCTTGGGACAGAAGATTGCTTCCAGGCTGAACATGAGGCCAAACATGTG
rJMSF014M16+ GGCTGATAAATCCTTGGGACAGAAGATTGCTTCCAGGCTGAACATGAGGCCAAACATGTG
rJMSF037F06+ GGCTGATAAATCCTTGGGACAGAAGATTGCTTCCAGGCTGAACATGAGGCCAAACATGTG
rJMSF026K03+ GGCTGATAAATCCTTGGGACAGAAGATTGCTTCCAGGCTGAACATGAGGCCAAACATGTG
rJMSF020B05+ GGCTGATAAATCCTTGGGACAGAAGATTGCTTCCAGGCTGAACATGAGGCCAAACATGTG
rJMSF033I02+ GGCTGATAAATCCTTGGGACAGAAGATTGCTTCCAGGCTGAACATGAGGCCAAACATGTG
rJMFF011H21+ GGCTGATAAATCCTTGGGACAGAAGATTGCTTCCAGGCTGAACATGAGGCCAAACATGTG
rJMSF050A16+ GGCTGATAAATCCTTGGGACAGAAGATTGCTTCCAGGCTGAACATGAGGCCAAACATGTG
____________________________________________________________
consensus GGCTGATAAATCCTTGGGACAGAAGATTGCTTCCAGGCTGAACATGAGGCCAAACATGTG
. : . : . : . : . : . :
rJMFF018E03+ AAGAAGCTGTTGAAGGGGGTTGATCTCTGATCTTCTGATTCTTGATTTTAGCTGCTAGCT
rJMFF031C05+ AAGAAGCTGTTGAAGGGGGTTGATCTCTGATCTTCTGATTCTTGATTTTAGCTGCTAGCT
rJMSF014M16+ AAGAAGCTGTTGAAGGGGGTTGATCTCTGATCTTCTGATTCTTGATTTTAGCTGCTAGCT
rJMSF037F06+ AAGAAGCTGTTGAAGGGGGTTGATCTCTGATCTTCTGATTCTTGATTTTAGCTGCTAGCT
rJMSF026K03+ AAGAAGCTGTTGAAGGGGGTTGATCTCTGATCTTCTGATTCTTGATTTTAGCTGCTAGCT
rJMSF020B05+ AAGAAGCTGTTGAAGGGGGTTGATCTCTGATCTTCTGATTCTTGATTTTAGCTGCTAGCT
rJMSF033I02+ AAGAAGCTGTTGAAGGGGGTTGATCTCTGATCTTCTGATTCTTGATTTTAGCTGCTAGCT
rJMFF011H21+ AAGAAGCTGTTGAAGGGGGTTGATCTCTGATCTTCTGATTCTTGATTTTAGCTGCTAGCT
rJMSF050A16+ AAGAAGCTGTTGAAGGGGGTTGATCTCTGATCTTCTGATTCTTGATTTTAGCTGCTAGCT
____________________________________________________________
consensus AAGAAGCTGTTGAAGGGGGTTGATCTCTGATCTTCTGATTCTTGATTTTAGCTGCTAGCT
. : . : . : . : . : . :
rJMFF018E03+ AATCTGTCTGTAATCCAGGCCGTCCATCACATTA-CAAGGACACATACATATATATTTTT
rJMFF031C05+ AATCTGTCTGTAATCCAGGCCGTCCATCACATTA-CAAGGACACATACATATATATTTTT
rJMSF014M16+ AATCTGTCTGTAATCCAGGCCGTCCATCACATTA-CAAGGACACATACATATATATTTTT
rJMSF037F06+ AATCTGTCTGTAATCCAGGCCGTCCATCACATTA-CAAGGACACATACATATATATTTTT
rJMSF026K03+ AATCTGTCTGTAATCCAGGCCGTCCATCACATTAGCAAGGACACATACATATATATTTT
rJMSF020B05+ AATCTGTCTGTAATCCAGGCCGTCCATCACATTA-CAAGGACACATACATATATATTTTT
rJMSF033I02+ AATCTGTCTGTAATCCAGGCCGTCCATCACATTA-CAAGGACACATACATATATATTTTT
rJMFF011H21+ AATCTGTCTGTAATCCAGGCCGTCCATCACATTA-CAAGGACACATACATATATATTTTT
rJMSF050A16+ AATCTGTCTGTAATCCAGGCCGTCCATCACATTA-CAAGGACACATACATATATATTTTT
____________________________________________________________
consensus AATCTGTCTGTAATCCAGGCCGTCCATCACATTA-CAAGGACACATACATATATATTTTT
. : . : . : . : . : . :
rJMFF018E03+ GGGTTTTCTTTTTTGCTTGAATACAATGATGATGATATGATATGAT
rJMFF031C05+ GGGTTTTCTTTTTTGCTTGAATACAATGATGATGATATGATATGAT
rJMSF014M16+ GGGTTTTCTTTTTTGCTTGAATACAATGATGATGATATGATATGATGT
rJMSF037F06+ GGGTTTTCTTTTTTGCTTGAATACAATGATGATGATATGATATGATGTTGAGTTTT
rJMSF020B05+ GGGTTTTCTTTTTTGCTTGAATACAATGATGATGATATGATATGATGTTGAGTTTTGTGT
rJMSF033I02+ GGGTTTTCTTTTTTGCTTGAATACAATGATGATGATATGATATGATGTTGAGTTTTGTGT
rJMFF011H21+ GGGTTTTCTTTTTTGCTTGAATACAATGATGATGATATGATATGATGTTGAGTTTTGTGT
rJMSF050A16+ GGGTTTTCTTTTTTGCTTGAATACAATGATGATGATATGATATGATGTTGAGTTTTGTGT
____________________________________________________________
consensus GGGTTTTCTTTTTTGCTTGAATACAATGATGATGATATGATATGATGTTGAGTTTTGTGT
. : . : . : . : . : . :
rJMSF020B05+ AATAAGAGTGTTGAA
rJMSF033I02+ AATAAGAGTNTTGAATTATAATATGGAAG
rJMFF011H21+ AATAAGAGTGTTGAATTATAATATGGAAG
rJMSF050A16+ AATAAGAGTGTTGAATTATAATATGGAAGTCCCCACTGCAAATACTTCCTTAGTTCCTCA
____________________________________________________________
consensus AATAAGAGTGTTGAATTATAATATGGAAGTCCCCACTGCAAATACTTCCTTAGTTCCTCA