Contig 008667:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003C18Sequence645008667 (5)gb|KJB61693.1|4e-29hypothetical protein B456_009G374900 [Gossypium raimondii]
JMFF037A21Sequence509005299 (7)ref|XP_009783913.1|1e-16PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian743008667 (5)gb|KJB61696.1|8e-53hypothetical protein B456_009G374900 [Gossypium raimondii]
JMFS114D12Sequence561008667 (5)gb|ADT91700.1|1e-78dicer-like protein 2 [Nicotiana attenuata]
JMSF022H20Sequence653005299 (7)ref|XP_009783913.1|2e-32PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian788008667 (5)ref|XP_002514810.1|7e-60ATP binding protein, putative [Ricinus communis] gb|EEF47364.1| ATP binding prot
JMSF049B02Sequence679005299 (7)ref|XP_009783913.1|2e-32PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian719008667 (5)gb|KJB61693.1|2e-39hypothetical protein B456_009G374900 [Gossypium raimondii]

Alignment

This contig is upended


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JMFS114D12- GAGAACTAGATCAGGAGTGTGTATTAAC
                      ____________________________________________________________
consensus GAGAACTAGATCAGGAGTGTGTATTAAC
 
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JMFS114D12- TTCAGGAAAACTGTACAGTAGGGGAAGAAGAAAAATGGATAATGAAACAATTGCTGATGT
                      ____________________________________________________________
consensus TTCAGGAAAACTGTACAGTAGGGGAAGAAGAAAAATGGATAATGAAACAATTGCTGATGT
 
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JMFS114D12- AACTGAAGCACTAATCGGTGCATTTCTTAGTACGGCTGGAGAAATAGCAGCTCTATCATT
                      ____________________________________________________________
consensus AACTGAAGCACTAATCGGTGCATTTCTTAGTACGGCTGGAGAAATAGCAGCTCTATCATT
 
. : . : . : . : . : . :
JMFS114D12- TCTCAGGTGGCTCGGTCTAGATATTGATTTTATCGATGCGCCCATCGTTGGGAACTTTCC
                      ____________________________________________________________
consensus TCTCAGGTGGCTCGGTCTAGATATTGATTTTATCGATGCGCCCATCGTTGGGAACTTTCC
 
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JMFS114D12- CTTGAATGCAGAGCAGATGGTTAACGTCAAACGTTTGGAGTCTGATTCGTTGTTGAATTA
                      ____________________________________________________________
consensus CTTGAATGCAGAGCAGATGGTTAACGTCAAACGTTTGGAGTCTGATTCGTTGTTGAATTA
 
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JMFS114D12- TACATTTCGCGATCCTTCTCTGCTTGTTGAAGCATTGACTCATGGCTCTTACATTCCACA
                      ____________________________________________________________
consensus TACATTTCGCGATCCTTCTCTGCTTGTTGAAGCATTGACTCATGGCTCTTACATTCCACA
 
. : . : . : . : . : . :
JMFS114D12- TGGAACTCAATCTTACCAGCGTTTGGAGTTTCTCGGGGACGCTGTGCTAGATTATGCCGT
rJMSF022H20+ TATGCCGT
                      ____________________________________________________________
consensus TGGAACTCAATCTTACCAGCGTTTGGAGTTTCTCGGGGACGCTGTGCTAGATTATGCCGT
 
. : . : . : . : . : . :
JMFS114D12- TACCAGGCATTTCTATGATCAGTATCCCGGACTATCCCCGGGATGCTTAACCGAGCTGAG
rJMFF037A21+ ATGCTTAACCGAGCTGAG
rJMSF022H20+ TACCAGGCATTTCTATGATCAGTATCCCGGACTATTCCCGGGATGCTTAACCGAGCTGAG
rJMSF049B02+ ATGCTTAACCGAGCTGAG
                      ____________________________________________________________
consensus TACCAGGCATTTCTATGATCAGTATCCCGGACTATTCCCGGGATGCTTAACCGAGCTGAG
 
. : . : . : . : . : . :
JMFS114D12- GTCTGAATCAGTGAACAACGCCTGCTATGCTCTATCCTCGGTTAAGGCTGGGTTGCATAA
rJMFF037A21+ GTCTGAATCAGTGAACAACGCCTGCTATGCTCTATCCTCGGTTAAGGCTGGGTTGCATAA
rJMSF022H20+ GTCTGAATCAGTGAACAACGCCTGCTATGCTCTATCCTCGGTTAAGGCTGGGTTGCATAA
rJMSF049B02+ GTCTGAATCAGTGAACAACGCCTGCTATGCTCTATCCTCGGTTAAGGCTGGGTTGCATAA
                      ____________________________________________________________
consensus GTCTGAATCAGTGAACAACGCCTGCTATGCTCTATCCTCGGTTAAGGCTGGGTTGCATAA
 
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JMFS114D12- CTATATTCTTCACTCGTCCACTGCTCTTCGGAGCAGTATAGCTGATTTTGTTA
rJMFF037A21+ CTATATTCTTCACTCGTCCACTGCTCTTCGGAGCAGTATAGCTGATTTTGTTAAGAATAT
rJMSF022H20+ CTATATTCTTCACTCGTCCACTGCTCTTCGGAGCAGTATAGCTGATTTTGTTAAGAATAT
rJMSF049B02+ CTATATTCTTCACTCGTCCACTGCTCTTCGGAGCAGTATAGCTGATTTTGTTAAGAATAT
                      ____________________________________________________________
consensus CTATATTCTTCACTCGTCCACTGCTCTTCGGAGCAGTATAGCTGATTTTGTTAAGAATAT
 
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rJMFF037A21+ CGAGCAGTCATCAGCCTCATCAACATTTGGATGGGTGCTCAAGACAAGTTTCCCATGGGT
rJMFF003C18+ GGT
rJMSF022H20+ CGAGCAGTCATCAGCCTCATCAACATTTGGATGGGTGCTCAAGACAAGTTTCCCATGGGT
rJMSF049B02+ CGAGCAGTCATCAGCCTCATCAACATTTGGATGGGTGCTCAAGACAAGTTTCCCATGG--
                      ____________________________________________________________
consensus CGAGCAGTCATCAGCCTCATCAACATTTGGATGGGTGCTCAAGACAAGTTTCCCATGGGT
 
. : . : . : . : . : . :
rJMFF037A21+ TCTTGCTGATATCATAGAATCTATAGCGGGGGCAATATATCTCGATTCGGGTTTGAGAAC
rJMFF003C18+ TCTTGCTGATATCATAGAATCTATAGCGGGGGCAATATATCTCGATTCGGGTTTGAGAAC
rJMSF022H20+ TCTTGCTGATATCATAGAATCTATAGCGGGGGCAATATATCTCGATTCGGGTTTGAGAAC
rJMSF049B02+ -----------------AATCTATAGCGGGGGCAATATATCTCGATTCGGGTTTGAGAAC
                      ____________________________________________________________
consensus TCTTGCTGATATCATAGAATCTATAGCGGGGGCAATATATCTCGATTCGGGTTTGAGAAC
 
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rJMFF037A21+ AGACATAGTTTTTGAGAAAATAAGACCGGTTTTGGAGCCCATGGTTACACCCGAGTCCCT
rJMFF003C18+ AGACATAGTTTTTGAGAAAATAAGACCGGTTTTGGAGCCCATGGTTACACCCGAGTCCCT
rJMSF022H20+ AGACATAGTTTTTGAGAAAATAAGACCGGTTTTGGAGCCCATGGTTACACCCGAGTCCCT
rJMSF049B02+ AGACATAGTTTTTGAGAAAATAAGACCGGTTTTGGAGCCCATGGTTACACCCGAGTCCCT
                      ____________________________________________________________
consensus AGACATAGTTTTTGAGAAAATAAGACCGGTTTTGGAGCCCATGGTTACACCCGAGTCCCT
 
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rJMFF037A21+ GAGACTTAACCCCGTAAAAGAGCTGACCGAGCTATGCCAAAAGAGAAAGTACAGGATGAA
rJMFF003C18+ GAGACTTAACCCCGTAAAAGAGCTGACCGAGCTATGCCAAAAGAGAAAGTACAGGATGAA
rJMSF022H20+ GAGACTTAACCCCGTAAAAGAGCTGACCGAGCTATGCCAAAAGAGAAAGTACAGGATGAA
rJMSF049B02+ GAGACTTAACCCCGTAAAAGAGCTGACCGAGCTATGCCAAAAGAGAAAGTACAGGATGAA
                      ____________________________________________________________
consensus GAGACTTAACCCCGTAAAAGAGCTGACCGAGCTATGCCAAAAGAGAAAGTACAGGATGAA
 
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rJMFF037A21+ GGAGCCTGTTGTGGTTCACAAAGATGGCGAGGCATTTACGACGATTGAGGTCATGGCAAA
rJMFF003C18+ GGAGCCTGTTGTGGTTCACAAAGATGGCGAGGCATGTACGACGATTGAGGTCATGGCAAA
rJMSF022H20+ GGAGCCTGTTGTGGTTCACAAAGATGGCGAGGCATGTACGACGATTGAGGTCATGGCAAA
rJMSF049B02+ GGAGCCTGTTGTGGTTCACAAAGATGGCGAGGCATGTACGACGATTGAGGTCATGGCAAA
                      ____________________________________________________________
consensus GGAGCCTGTTGTGGTTCACAAAGATGGCGAGGCATGTACGACGATTGAGGTCATGGCAAA
 
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rJMFF037A21+ TGGCGGTGTTCGCAGTTGCTCGTCCTCTGCTCGCAATCGAAAGACTGCCAAGAGATTGGC
rJMFF003C18+ TGGCGGTGTTCGCAGTTGCTCGTCCTCTGCTCGCAATCGAAAGACTGCCAAGAGATTGGC
rJMSF022H20+ TGGCGGTGTTCGCAGTTGCTCGTCCTCTGCTCGCAATCGAAAGACTGCCAAGAGATTGGC
rJMSF049B02+ TGGCGGTGTTCGCAGTTGCTCGTCCTCTGCTCGCAATCGAAAGACTGCCAAGAGATTGGC
                      ____________________________________________________________
consensus TGGCGGTGTTCGCAGTTGCTCGTCCTCTGCTCGCAATCGAAAGACTGCCAAGAGATTGGC
 
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rJMFF037A21+ TTGCGAGAGAATGCTGGAGTTGCTGGAATCTGAAACCTGTTCCTGAGAGTTTATTTGATC
rJMFF003C18+ TTGCGAGAGAATGCTGGAGTTGCTGGAATCTGAAACCTGTTCCTGAGAGTTTATTTGATC
rJMSF022H20+ TTGCGAGAGAATGCTGGAGTTGCTGGAATCTGAAACCTGTTCCTGAGAGTTTATTTGATC
rJMSF049B02+ TTGCGAGAGAATGCTGGAGTTGCTGGAATCTGAAACCTGTTCCTGAGAGTTTATTTGATC
                      ____________________________________________________________
consensus TTGCGAGAGAATGCTGGAGTTGCTGGAATCTGAAACCTGTTCCTGAGAGTTTATTTGATC
 
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rJMFF037A21+ TAATCTTTATGATCAAGCTAAGGAGTAGCAATTCCTTCCTGGGAATTGTTGTTTTATCTT
rJMFF003C18+ TAATCTTTATGATCAAGCTAAGGAGTAGCAATTCCTTCCTGGGAATTGTTGTTTTATCTT
rJMSF022H20+ TAATCTTTATGATCAAGCTAAGGAGTAGCAATTCCTTCCTGGGAATTGTTGTTTTATCTT
rJMSF049B02+ TAATCTTTATGATCAAGCTAAGGAGTAGCAATTCCTTCCTGGGAATTGTTGTTTTATCTT
                      ____________________________________________________________
consensus TAATCTTTATGATCAAGCTAAGGAGTAGCAATTCCTTCCTGGGAATTGTTGTTTTATCTT
 
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rJMFF037A21+ TTGTAAATAGAATTCTGCAGAATCCTTTAATTTTCTAAGACTTTTAGGATGAGCCAAACA
rJMFF003C18+ TTGTAAATAGAATTCTGCAGAATCCTTTAATTTTCTAAGACTTTTAGGATGAGCCAAACA
rJMSF022H20+ TTGTAAATAGAATTCTGCAGAATCCTTTAATTTTCTAAGACTTTTAGGATGAGCCAAACA
rJMSF049B02+ TTGTAAATAGAATTCTGCAGAATCCTTTAATTTTCTAAGACTTTTAGGATGAGCCAAACA
                      ____________________________________________________________
consensus TTGTAAATAGAATTCTGCAGAATCCTTTAATTTTCTAAGACTTTTAGGATGAGCCAAACA
 
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rJMFF037A21+ GAAAAAAATGCACTTCTGTGCCATTATATTCCTAATGGTTTGTTGGCAAATTCTATTA
rJMFF003C18+ GAAAAAAATGCACTTCTGNGCCATTAT
rJMSF022H20+ GAAAAAAATGCACTTCTGTGCCATTATATTCCTAATGGTTTGTTGGCAAATTCTATTA
rJMSF049B02+ GAAAAAAATGCACTTCTGTGCCATTATATTCCTAATGGTTTGTTGGCAAATTCTATTATG
                      ____________________________________________________________
consensus GAAAAAAATGCACTTCTGTGCCATTATATTCCTAATGGTTTGTTGGCAAATTCTATTATG