| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003C18 | Sequence | 645 | 008667 (5) | gb|KJB61693.1| | 4e-29 | hypothetical protein B456_009G374900 [Gossypium raimondii] | |||||
| JMFF037A21 | Sequence | 509 | 005299 (7) | ref|XP_009783913.1| | 1e-16 | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian | 743 | 008667 (5) | gb|KJB61696.1| | 8e-53 | hypothetical protein B456_009G374900 [Gossypium raimondii] |
| JMFS114D12 | Sequence | 561 | 008667 (5) | gb|ADT91700.1| | 1e-78 | dicer-like protein 2 [Nicotiana attenuata] | |||||
| JMSF022H20 | Sequence | 653 | 005299 (7) | ref|XP_009783913.1| | 2e-32 | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian | 788 | 008667 (5) | ref|XP_002514810.1| | 7e-60 | ATP binding protein, putative [Ricinus communis] gb|EEF47364.1| ATP binding prot |
| JMSF049B02 | Sequence | 679 | 005299 (7) | ref|XP_009783913.1| | 2e-32 | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian | 719 | 008667 (5) | gb|KJB61693.1| | 2e-39 | hypothetical protein B456_009G374900 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
JMFS114D12- GAGAACTAGATCAGGAGTGTGTATTAAC
____________________________________________________________
consensus GAGAACTAGATCAGGAGTGTGTATTAAC
. : . : . : . : . : . :
JMFS114D12- TTCAGGAAAACTGTACAGTAGGGGAAGAAGAAAAATGGATAATGAAACAATTGCTGATGT
____________________________________________________________
consensus TTCAGGAAAACTGTACAGTAGGGGAAGAAGAAAAATGGATAATGAAACAATTGCTGATGT
. : . : . : . : . : . :
JMFS114D12- AACTGAAGCACTAATCGGTGCATTTCTTAGTACGGCTGGAGAAATAGCAGCTCTATCATT
____________________________________________________________
consensus AACTGAAGCACTAATCGGTGCATTTCTTAGTACGGCTGGAGAAATAGCAGCTCTATCATT
. : . : . : . : . : . :
JMFS114D12- TCTCAGGTGGCTCGGTCTAGATATTGATTTTATCGATGCGCCCATCGTTGGGAACTTTCC
____________________________________________________________
consensus TCTCAGGTGGCTCGGTCTAGATATTGATTTTATCGATGCGCCCATCGTTGGGAACTTTCC
. : . : . : . : . : . :
JMFS114D12- CTTGAATGCAGAGCAGATGGTTAACGTCAAACGTTTGGAGTCTGATTCGTTGTTGAATTA
____________________________________________________________
consensus CTTGAATGCAGAGCAGATGGTTAACGTCAAACGTTTGGAGTCTGATTCGTTGTTGAATTA
. : . : . : . : . : . :
JMFS114D12- TACATTTCGCGATCCTTCTCTGCTTGTTGAAGCATTGACTCATGGCTCTTACATTCCACA
____________________________________________________________
consensus TACATTTCGCGATCCTTCTCTGCTTGTTGAAGCATTGACTCATGGCTCTTACATTCCACA
. : . : . : . : . : . :
JMFS114D12- TGGAACTCAATCTTACCAGCGTTTGGAGTTTCTCGGGGACGCTGTGCTAGATTATGCCGT
rJMSF022H20+ TATGCCGT
____________________________________________________________
consensus TGGAACTCAATCTTACCAGCGTTTGGAGTTTCTCGGGGACGCTGTGCTAGATTATGCCGT
. : . : . : . : . : . :
JMFS114D12- TACCAGGCATTTCTATGATCAGTATCCCGGACTATCCCCGGGATGCTTAACCGAGCTGAG
rJMFF037A21+ ATGCTTAACCGAGCTGAG
rJMSF022H20+ TACCAGGCATTTCTATGATCAGTATCCCGGACTATTCCCGGGATGCTTAACCGAGCTGAG
rJMSF049B02+ ATGCTTAACCGAGCTGAG
____________________________________________________________
consensus TACCAGGCATTTCTATGATCAGTATCCCGGACTATTCCCGGGATGCTTAACCGAGCTGAG
. : . : . : . : . : . :
JMFS114D12- GTCTGAATCAGTGAACAACGCCTGCTATGCTCTATCCTCGGTTAAGGCTGGGTTGCATAA
rJMFF037A21+ GTCTGAATCAGTGAACAACGCCTGCTATGCTCTATCCTCGGTTAAGGCTGGGTTGCATAA
rJMSF022H20+ GTCTGAATCAGTGAACAACGCCTGCTATGCTCTATCCTCGGTTAAGGCTGGGTTGCATAA
rJMSF049B02+ GTCTGAATCAGTGAACAACGCCTGCTATGCTCTATCCTCGGTTAAGGCTGGGTTGCATAA
____________________________________________________________
consensus GTCTGAATCAGTGAACAACGCCTGCTATGCTCTATCCTCGGTTAAGGCTGGGTTGCATAA
. : . : . : . : . : . :
JMFS114D12- CTATATTCTTCACTCGTCCACTGCTCTTCGGAGCAGTATAGCTGATTTTGTTA
rJMFF037A21+ CTATATTCTTCACTCGTCCACTGCTCTTCGGAGCAGTATAGCTGATTTTGTTAAGAATAT
rJMSF022H20+ CTATATTCTTCACTCGTCCACTGCTCTTCGGAGCAGTATAGCTGATTTTGTTAAGAATAT
rJMSF049B02+ CTATATTCTTCACTCGTCCACTGCTCTTCGGAGCAGTATAGCTGATTTTGTTAAGAATAT
____________________________________________________________
consensus CTATATTCTTCACTCGTCCACTGCTCTTCGGAGCAGTATAGCTGATTTTGTTAAGAATAT
. : . : . : . : . : . :
rJMFF037A21+ CGAGCAGTCATCAGCCTCATCAACATTTGGATGGGTGCTCAAGACAAGTTTCCCATGGGT
rJMFF003C18+ GGT
rJMSF022H20+ CGAGCAGTCATCAGCCTCATCAACATTTGGATGGGTGCTCAAGACAAGTTTCCCATGGGT
rJMSF049B02+ CGAGCAGTCATCAGCCTCATCAACATTTGGATGGGTGCTCAAGACAAGTTTCCCATGG--
____________________________________________________________
consensus CGAGCAGTCATCAGCCTCATCAACATTTGGATGGGTGCTCAAGACAAGTTTCCCATGGGT
. : . : . : . : . : . :
rJMFF037A21+ TCTTGCTGATATCATAGAATCTATAGCGGGGGCAATATATCTCGATTCGGGTTTGAGAAC
rJMFF003C18+ TCTTGCTGATATCATAGAATCTATAGCGGGGGCAATATATCTCGATTCGGGTTTGAGAAC
rJMSF022H20+ TCTTGCTGATATCATAGAATCTATAGCGGGGGCAATATATCTCGATTCGGGTTTGAGAAC
rJMSF049B02+ -----------------AATCTATAGCGGGGGCAATATATCTCGATTCGGGTTTGAGAAC
____________________________________________________________
consensus TCTTGCTGATATCATAGAATCTATAGCGGGGGCAATATATCTCGATTCGGGTTTGAGAAC
. : . : . : . : . : . :
rJMFF037A21+ AGACATAGTTTTTGAGAAAATAAGACCGGTTTTGGAGCCCATGGTTACACCCGAGTCCCT
rJMFF003C18+ AGACATAGTTTTTGAGAAAATAAGACCGGTTTTGGAGCCCATGGTTACACCCGAGTCCCT
rJMSF022H20+ AGACATAGTTTTTGAGAAAATAAGACCGGTTTTGGAGCCCATGGTTACACCCGAGTCCCT
rJMSF049B02+ AGACATAGTTTTTGAGAAAATAAGACCGGTTTTGGAGCCCATGGTTACACCCGAGTCCCT
____________________________________________________________
consensus AGACATAGTTTTTGAGAAAATAAGACCGGTTTTGGAGCCCATGGTTACACCCGAGTCCCT
. : . : . : . : . : . :
rJMFF037A21+ GAGACTTAACCCCGTAAAAGAGCTGACCGAGCTATGCCAAAAGAGAAAGTACAGGATGAA
rJMFF003C18+ GAGACTTAACCCCGTAAAAGAGCTGACCGAGCTATGCCAAAAGAGAAAGTACAGGATGAA
rJMSF022H20+ GAGACTTAACCCCGTAAAAGAGCTGACCGAGCTATGCCAAAAGAGAAAGTACAGGATGAA
rJMSF049B02+ GAGACTTAACCCCGTAAAAGAGCTGACCGAGCTATGCCAAAAGAGAAAGTACAGGATGAA
____________________________________________________________
consensus GAGACTTAACCCCGTAAAAGAGCTGACCGAGCTATGCCAAAAGAGAAAGTACAGGATGAA
. : . : . : . : . : . :
rJMFF037A21+ GGAGCCTGTTGTGGTTCACAAAGATGGCGAGGCATTTACGACGATTGAGGTCATGGCAAA
rJMFF003C18+ GGAGCCTGTTGTGGTTCACAAAGATGGCGAGGCATGTACGACGATTGAGGTCATGGCAAA
rJMSF022H20+ GGAGCCTGTTGTGGTTCACAAAGATGGCGAGGCATGTACGACGATTGAGGTCATGGCAAA
rJMSF049B02+ GGAGCCTGTTGTGGTTCACAAAGATGGCGAGGCATGTACGACGATTGAGGTCATGGCAAA
____________________________________________________________
consensus GGAGCCTGTTGTGGTTCACAAAGATGGCGAGGCATGTACGACGATTGAGGTCATGGCAAA
. : . : . : . : . : . :
rJMFF037A21+ TGGCGGTGTTCGCAGTTGCTCGTCCTCTGCTCGCAATCGAAAGACTGCCAAGAGATTGGC
rJMFF003C18+ TGGCGGTGTTCGCAGTTGCTCGTCCTCTGCTCGCAATCGAAAGACTGCCAAGAGATTGGC
rJMSF022H20+ TGGCGGTGTTCGCAGTTGCTCGTCCTCTGCTCGCAATCGAAAGACTGCCAAGAGATTGGC
rJMSF049B02+ TGGCGGTGTTCGCAGTTGCTCGTCCTCTGCTCGCAATCGAAAGACTGCCAAGAGATTGGC
____________________________________________________________
consensus TGGCGGTGTTCGCAGTTGCTCGTCCTCTGCTCGCAATCGAAAGACTGCCAAGAGATTGGC
. : . : . : . : . : . :
rJMFF037A21+ TTGCGAGAGAATGCTGGAGTTGCTGGAATCTGAAACCTGTTCCTGAGAGTTTATTTGATC
rJMFF003C18+ TTGCGAGAGAATGCTGGAGTTGCTGGAATCTGAAACCTGTTCCTGAGAGTTTATTTGATC
rJMSF022H20+ TTGCGAGAGAATGCTGGAGTTGCTGGAATCTGAAACCTGTTCCTGAGAGTTTATTTGATC
rJMSF049B02+ TTGCGAGAGAATGCTGGAGTTGCTGGAATCTGAAACCTGTTCCTGAGAGTTTATTTGATC
____________________________________________________________
consensus TTGCGAGAGAATGCTGGAGTTGCTGGAATCTGAAACCTGTTCCTGAGAGTTTATTTGATC
. : . : . : . : . : . :
rJMFF037A21+ TAATCTTTATGATCAAGCTAAGGAGTAGCAATTCCTTCCTGGGAATTGTTGTTTTATCTT
rJMFF003C18+ TAATCTTTATGATCAAGCTAAGGAGTAGCAATTCCTTCCTGGGAATTGTTGTTTTATCTT
rJMSF022H20+ TAATCTTTATGATCAAGCTAAGGAGTAGCAATTCCTTCCTGGGAATTGTTGTTTTATCTT
rJMSF049B02+ TAATCTTTATGATCAAGCTAAGGAGTAGCAATTCCTTCCTGGGAATTGTTGTTTTATCTT
____________________________________________________________
consensus TAATCTTTATGATCAAGCTAAGGAGTAGCAATTCCTTCCTGGGAATTGTTGTTTTATCTT
. : . : . : . : . : . :
rJMFF037A21+ TTGTAAATAGAATTCTGCAGAATCCTTTAATTTTCTAAGACTTTTAGGATGAGCCAAACA
rJMFF003C18+ TTGTAAATAGAATTCTGCAGAATCCTTTAATTTTCTAAGACTTTTAGGATGAGCCAAACA
rJMSF022H20+ TTGTAAATAGAATTCTGCAGAATCCTTTAATTTTCTAAGACTTTTAGGATGAGCCAAACA
rJMSF049B02+ TTGTAAATAGAATTCTGCAGAATCCTTTAATTTTCTAAGACTTTTAGGATGAGCCAAACA
____________________________________________________________
consensus TTGTAAATAGAATTCTGCAGAATCCTTTAATTTTCTAAGACTTTTAGGATGAGCCAAACA
. : . : . : . : . : . :
rJMFF037A21+ GAAAAAAATGCACTTCTGTGCCATTATATTCCTAATGGTTTGTTGGCAAATTCTATTA
rJMFF003C18+ GAAAAAAATGCACTTCTGNGCCATTAT
rJMSF022H20+ GAAAAAAATGCACTTCTGTGCCATTATATTCCTAATGGTTTGTTGGCAAATTCTATTA
rJMSF049B02+ GAAAAAAATGCACTTCTGTGCCATTATATTCCTAATGGTTTGTTGGCAAATTCTATTATG
____________________________________________________________
consensus GAAAAAAATGCACTTCTGTGCCATTATATTCCTAATGGTTTGTTGGCAAATTCTATTATG