Contig 008661:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002H17Sequence155008661 (5)ref|XP_006365040.1|7e-06PREDICTED: glycine cleavage system H protein 2, mitochondrial-like [Solanum tub
JMFF009I04Sequence303008661 (5)emb|CDP11250.1|9e-43unnamed protein product [Coffea canephora]
JMSF048A11Sequence713008661 (5)emb|CDP11250.1|1e-84unnamed protein product [Coffea canephora]750008661 (5)emb|CDP11250.1|2e-84unnamed protein product [Coffea canephora]
JMSF049A11Sequence481007302 (11)emb|CDP14057.1|2e-69unnamed protein product [Coffea canephora]627008661 (5)emb|CDP11250.1|1e-74unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF002H17-                                   ACATTCAAGACTTAACAAAGGGCGGCGTGCTTCTTT
JMSF048A11-                                          AGACTTAACAAAGGGCGGCGTGCTTCTTT
rJMSF048A11+                                         AGACTTAACAAAGGGCGGCGTGCTTCTTT
                      ____________________________________________________________
consensus                                     ACATTCAAGACTTAACAAAGGGCGGCGTGCTTCTTT
 
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JMFF002H17-           CTGTGTGTATTCGAAGCGGCGGTGTGAGTAGAGATGGCTATGCGGGTTTGGGCTTCAAGG
rJMFF009I04+                  ATTCGAAGCGGCGGTATGAGTAGAGATGGCTATGCGGGTTTGGGCTTCAAGG
JMSF048A11-           CTGTGTGTATTCGAAGCGGCGGTGTGAGTAGAGATGGCTATGCGGGTTTGGGCTTCAAGG
rJMSF048A11+          CTGTGTGTATTCGAAGCGGCGGTGTGAGTAGAGATGGCTATGCGGGTTTGGGCTTCAAGG
                      ____________________________________________________________
consensus             CTGTGTGTATTCGAAGCGGCGGTGTGAGTAGAGATGGCTATGCGGGTTTGGGCTTCAAGG
 
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JMFF002H17-           GCTGCTTCTTACCTTAGGATCTCGGCTTTCCCCAGAGGCTTTGCTACTGTTGCCAAGGA 
rJMFF009I04+          GCTGCTTCTTACCTTAGGATCTCGGCTTTCCCCAGAGGCTTTGCTACTGTTGCCAAGGAT
JMSF048A11-           GCTGCTTCTTACCTTAGGATCTCGGCTTTCCCCAGAGGCTTTGCTACTGTTGCCAAGGAT
rJMSF049A11+             GCTTCTTACCNTAGGATCTCGGCTTTCCCCAGAGGCTTTGCTACTGTTGCCAAGGAT
rJMSF048A11+          GCTGCTTCTTACCTTAGGATCTCGGCTTTCCCCAGAGGCTTTGCTACTGTTGCCAAGGAT
                      ____________________________________________________________
consensus             GCTGCTTCTTACCTTAGGATCTCGGCTTTCCCCAGAGGCTTTGCTACTGTTGCCAAGGAT
 
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rJMFF009I04+          TTGAAGTATGCAGACACCCATGAATGGGTTAAAGTTGATGGTAGTTCTGCCACTGTTGGC
JMSF048A11-           TTGAAGTATGCAGACACCCATGAATGGGTTAAAGTTGATGGTAGTTCTGCCACTGTTGGC
rJMSF049A11+          TTGAAGTATGCAGACACCCATGAATGGGTTAAAGTTGATNGTAGTTCTGCCACTGTTGGC
rJMSF048A11+          TTGAAGTATGCAGACACCCATGAATGGGTTAAAGTTGATGGTAGTTCTGCCACTGTTGGC
                      ____________________________________________________________
consensus             TTGAAGTATGCAGACACCCATGAATGGGTTAAAGTTGATGGTAGTTCTGCCACTGTTGGC
 
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rJMFF009I04+          ATCACCTATCATGCTCAGGNANATATAGGCGATGTGGTCTTTGNTGAGTTACCGGAAGTT
JMSF048A11-           ATCACCTATCATGCTCAGGATCATCTAGGCGATGTGGTCTTTGTTGAGTTACCGGAAGTT
rJMSF049A11+          ATCACCTATCATGNTCAGGATCATTTAGGCGATGTGGTCTTTNTTGAGTTACCGGAAGTT
rJMSF048A11+          ATCACCTATCATGCTCAGGATCATCTAGGCGATGTGGTCTTTGTTGAGTTACCGGAAGTT
                      ____________________________________________________________
consensus             ATCACCTATCATGCTCAGGATCATCTAGGCGATGTGGTCTTTGTTGAGTTACCGGAAGTT
 
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rJMFF009I04+          GGGGTTGATGTAAAACAGGGCGACAGTTTTGGCGCTGTTGAAAGTGTTAAGGCCTCCAGT
JMSF048A11-           GGGGTTGATGTAAAACAGGGCGACAGTTTTGGCGCTGTTGAAAGTGTTAAGGCCTCCAGT
rJMSF049A11+          GGGGTTGATGTANAACAGGGCGACAGTTTTGGCGCTGTTGAAAGTGTTAAGGCCTCCAGT
rJMSF048A11+          GGGGTTGATGTAAAACAGGGCGACAGTTTTGGCGCTGTTGAAAGTGTTAAGGCCTCCAGT
                      ____________________________________________________________
consensus             GGGGTTGATGTAAAACAGGGCGACAGTTTTGGCGCTGTTGAAAGTGTTAAGGCCTCCAGT
 
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rJMFF009I04+          GANGTCAATTC                                                 
JMSF048A11-           GATGTCAATTCTCCTATTTCTGGCAAGGTGGTTGCAGTTAATGAGAAACTCAATGACTCC
rJMSF049A11+          GATGTCAATTCTCCTATTTCTGGCAAGGTGGTTGCAGTTAATGAGAAACTCAATGACTCC
rJMSF048A11+          GATGTCAATTCTCCTATTTCTGGCAAGGTGGTTGCAGTTAATGAGAAACTCAATGACTCC
                      ____________________________________________________________
consensus             GATGTCAATTCTCCTATTTCTGGCAAGGTGGTTGCAGTTAATGAGAAACTCAATGACTCC
 
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JMSF048A11-           CCAGGCCTGGTTAACGGGAGCCCGTATGAAGATGGGTGGATCATGAAGGTGGAGGTAAGC
rJMSF049A11+          CCAGGCCTGGTTAACGGGAGCCCGTATGAAGATGGGTGGATCATGAAGGTGGAGGTAAGC
rJMSF048A11+          CCAGGCCTGGTTAACGGGAGCCCGTATGAAGATGGGTGGATCATGAAGGTGGAGGTAAGC
                      ____________________________________________________________
consensus             CCAGGCCTGGTTAACGGGAGCCCGTATGAAGATGGGTGGATCATGAAGGTGGAGGTAAGC
 
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JMSF048A11-           GATGCGAAGGAACTGAGTTCCTTGATGGATGCGGAGCAGTATTCGAAGTTTTGTGAAGAA
rJMSF049A11+          GATGCGAAGGAACTGAGTTCCTTGATGGATGCGGAGCAGTATTCGAAGTTTTGTGAAGAA
rJMSF048A11+          GATGCGAAGGAACTGAGTTCCTTGATGGATGCGGAGCAGTATTCGAAGTTTTGTGAAGAA
                      ____________________________________________________________
consensus             GATGCGAAGGAACTGAGTTCCTTGATGGATGCGGAGCAGTATTCGAAGTTTTGTGAAGAA
 
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JMSF048A11-           GAAGATGCAAAGCATTGAGGGAGGGTTGCTTCACAGTACAAAGCTGATGACAAGAAAAAG
rJMSF049A11+          GAAGATGCAAAGCATTGAGGGAGGGNTGCTTCACAGTACAAANCTGATGACAAGAAAAAN
rJMSF048A11+          GAAGATGCAAAGCATTGAGGGAGGGTTGCTTCACAGTACAAAGCTGATGACAAGAAAAAG
                      ____________________________________________________________
consensus             GAAGATGCAAAGCATTGAGGGAGGGTTGCTTCACAGTACAAAGCTGATGACAAGAAAAAG
 
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JMSF048A11-           TTGTTAAAACTTTCTAAACTTGTGGATTCTTAAGGTTCCTATCAATGGCTGCTCAATCAC
rJMSF049A11+          TTGTTAAAACTTTCTAAACTTGTGGATTCTTAAGGNTCCTATCAATGGCTGCTCAATCAC
rJMSF048A11+          TTGTTAAAACTTTCTAAACTTGTGGATTCTTAAGGTTCCTATCAATGGCTGCTCAATCAC
                      ____________________________________________________________
consensus             TTGTTAAAACTTTCTAAACTTGTGGATTCTTAAGGTTCCTATCAATGGCTGCTCAATCAC
 
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JMSF048A11-           CATAGGTCTTTTTAGGTTTATTGGTTTTGGTTTCTGAGTTGTCATTGGTATGGTGTTGCA
rJMSF049A11+          CNTANGTCTTTTTAGGTTTATTGGTTTTGGTTTCTGAGTTNTCATTGGTATGGTGTTGCA
rJMSF048A11+          CATAGGTCTTTTTAGGTTTATTGGTTTTGGTTTCTGAGTTGTCATTGGTATGGTGTTGCA
                      ____________________________________________________________
consensus             CATAGGTCTTTTTAGGTTTATTGGTTTTGGTTTCTGAGTTGTCATTGGTATGGTGTTGCA
 
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rJMSF049A11+          TCAAGTGCACAACACNTTGCAATCAAAATG                              
rJMSF048A11+          -CAAGTGCACAACACATTGCAATCAAAATGTGCAGTACTTTGATGGTTTGATTTTAAGTG
                      ____________________________________________________________
consensus             TCAAGTGCACAACACATTGCAATCAAAATGTGCAGTACTTTGATGGTTTGATTTTAAGTG