| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN041F04 | Sequence | 623 | 008658 (3) | ref|XP_009630909.1| | 9e-78 | PREDICTED: rop guanine nucleotide exchange factor 1 isoform X2 [Nicotiana tomen | |||||
| JMSF020L05 | Sequence | 665 | 006496 (2) | ref|XP_009630908.1| | 2e-46 | PREDICTED: rop guanine nucleotide exchange factor 1 isoform X1 [Nicotiana tomen | 763 | 008658 (3) | ref|XP_004231073.1| | 2e-100 | PREDICTED: rop guanine nucleotide exchange factor 1 [Solanum lycopersicum] |
| JMSF047M04 | Sequence | 688 | 006496 (2) | ref|XP_009794967.1| | 2e-79 | PREDICTED: rop guanine nucleotide exchange factor 1 isoform X1 [Nicotiana sylve | 758 | 008658 (3) | ref|XP_004231073.1| | 2e-86 | PREDICTED: rop guanine nucleotide exchange factor 1 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF020L05+ AACA
____________________________________________________________
consensus AACA
. : . : . : . : . : . :
rJMSF020L05+ TCACACACTTGAAGTGGCGNATAGAATTGAGGCTGCTGTATACTATTGGAGACTGAAAGA
____________________________________________________________
consensus TCACACACTTGAAGTGGCGNATAGAATTGAGGCTGCTGTATACTATTGGAGACTGAAAGA
. : . : . : . : . : . :
rJMSF020L05+ CCGGAAAAATCATTCAAATCCAAAAAAATCAAAGCACAAAACTTGGGGAGGTAAGGTCAA
rJMSF047M04+ GGGAGGTAAGGTCAA
____________________________________________________________
consensus CCGGAAAAATCATTCAAATCCAAAAAAATCAAAGCACAAAACTTGGGGAGGTAAGGTCAA
. : . : . : . : . : . :
rJMSF020L05+ GGGTCTTGTAGCTGATATTGGCAGAAATCATTTTCTGGCTGAACGAGCAGAAACGCTTTT
JMFN041F04- TCATTTTCTGGCTGAACGAGCAGAAACGCTTTT
rJMSF047M04+ GGGTCTTGTAGCTGATATTGGCAGAAATCATTTTCTGGCTGAACGAGCAGAAACGCTTTT
____________________________________________________________
consensus GGGTCTTGTAGCTGATATTGGCAGAAATCATTTTCTGGCTGAACGAGCAGAAACGCTTTT
. : . : . : . : . : . :
rJMSF020L05+ GCATTGCTTGAGACTTCGCTTCCCCGGTCTACCACAAACCGCTCTAGATATGTATAAAAT
JMFN041F04- GCATTGCTTGAGACTTCGCTTCCCCGGTCTACCACAAACCGCTCTAGATATGTATAAAAT
rJMSF047M04+ GCATTGCTTGAGACTTCGCTTCCCCGGTCTACCACAAACCGCTCTAGATATGTATAAAAT
____________________________________________________________
consensus GCATTGCTTGAGACTTCGCTTCCCCGGTCTACCACAAACCGCTCTAGATATGTATAAAAT
. : . : . : . : . : . :
rJMSF020L05+ CCAGTACAACAAGGATGTTGGTCAGTCTATTCTTGAAAGTTACTCAAGGGTGATGGAGAG
JMFN041F04- CCAGTACAACAAGGATGTTGGTCAGTCTATTCTTGAAAGTTACTCAAGGGTGATGGAGAG
rJMSF047M04+ CCAGTACAACAAGGATGTTGGTCAGTCTATTCTTGAAAGTTACTCAAGGGTGATGGAGAG
____________________________________________________________
consensus CCAGTACAACAAGGATGTTGGTCAGTCTATTCTTGAAAGTTACTCAAGGGTGATGGAGAG
. : . : . : . : . : . :
rJMSF020L05+ CTTGGCATTTAACATTATGGCAAGGATTGACGACGTTCTATATGCAGATGATGAGACCAA
JMFN041F04- CTTGGCATTTAACATTATGGCAAGGATTGACGACGTTCTATATGCAGATGATGAGACCAA
rJMSF047M04+ CTTGGCATTTAACATTATGGCAAGGATTGACGACGTTCTATATGCAGATGATGAGACCAA
____________________________________________________________
consensus CTTGGCATTTAACATTATGGCAAGGATTGACGACGTTCTATATGCAGATGATGAGACCAA
. : . : . : . : . : . :
rJMSF020L05+ GAACAGTGCTGCAACTGAATCTTCATCCATCTTTAACAGGGGAGGTTTGGGCGGTCTTCC
JMFN041F04- GAACAGTGCTGCAACTGAATCTTCATCCATCTTTAACAGGGGAGGTTTGGGCGGTCTTCC
rJMSF047M04+ GAACAGTGCTGCAACTGAATCTTCATCCATCTTTAACAGGGGAGGTTTGGGCGGTCTTCC
____________________________________________________________
consensus GAACAGTGCTGCAACTGAATCTTCATCCATCTTTAACAGGGGAGGTTTGGGCGGTCTTCC
. : . : . : . : . : . :
rJMSF020L05+ TATCCAAAAGCGGATGTCACCAAGTCCCTTTTCTATTCATCACAGTCCTTACACCTCTCC
JMFN041F04- TATCCAAAAGCGGATGTCACCAAGTCCCTTTTCTATTCATCACAGTCCTTACACCTCTCC
rJMSF047M04+ TATCCAAAAGCGGATGTCACCAAGTCCCTTTTCTATTCATCACAGTCCTTACACCTCTCC
____________________________________________________________
consensus TATCCAAAAGCGGATGTCACCAAGTCCCTTTTCTATTCATCACAGTCCTTACACCTCTCC
. : . : . : . : . : . :
rJMSF020L05+ ATTTGCTACTCCAACATATTGTTTGTCTCCTCCCTCGATGAGCAGTCCCAAAAAAACAGC
JMFN041F04- ATTTGCTACTCCAACATATTGTTTGTCTCCTCCCTCGATGAGCAGTCCCAAAAAAACAGC
rJMSF047M04+ ATTTGCTACTCCAACATATTGTTTGTCTCCTCCCTCGATGAGCAGTCCCAAAAAAACAGC
____________________________________________________________
consensus ATTTGCTACTCCAACATATTGTTTGTCTCCTCCCTCGATGAGCAGTCCCAAAAAAACAGC
. : . : . : . : . : . :
rJMSF020L05+ TTCCCCTTCAAAGAAGGATGGCTTCACTAACTCCAAGATTGAAAATGTGATGCCTGCTGA
JMFN041F04- TTCCCCTTCAAAGAAGGATGGCTTCACTAACTCCAAGATTGAAAATGTGATGCCTGCTGA
rJMSF047M04+ TTCCCCTTCAAAGAAGGATGGCTTCACTAACTCCAAGATTGAAAATGTGATGCCTGCTGA
____________________________________________________________
consensus TTCCCCTTCAAAGAAGGATGGCTTCACTAACTCCAAGATTGAAAATGTGATGCCTGCTGA
. : . : . : . : . : . :
rJMSF020L05+ CAAGGAAAAATTGTGGTCATATGCTAGTAATCTTAGTGCCCAAATAGTATCCAAGGATGC
JMFN041F04- CAAGGAAAAATTGTGGTCATATGCTAGTAATCTTAGTGCCCAAATAGTATCCAAGGATGC
rJMSF047M04+ CAAGGAAAAATTGTGGTCATATGCTAGTAATCTTAGTGCCCAAATAGTATCCAAGGATGC
____________________________________________________________
consensus CAAGGAAAAATTGTGGTCATATGCTAGTAATCTTAGTGCCCAAATAGTATCCAAGGATGC
. : . : . : . : . : . :
rJMSF020L05+ GCCTGAACGCGATTGAGAGTTTTGAAGGAAGCTGTTAGGGATTATGTTGTATATTTCTTT
JMFN041F04- GCCTGAACGCGATTGAGAGTTTTGAAGGAAGCTGTTAGGGATTATGTTGTATATTTCTTT
rJMSF047M04+ GCCTGAACGCGATTGAGAGTTTTGAAGGAAGCTGTTAGGGATTATGTTGTATATTTCTTT
____________________________________________________________
consensus GCCTGAACGCGATTGAGAGTTTTGAAGGAAGCTGTTAGGGATTATGTTGTATATTTCTTT
. : . : . : . : . : . :
rJMSF020L05+ AGCTTAGCTGCATATTTCTTAATTGCAGTATTATTTT
JMFN041F04- AGCTTAGCTGCATATTTCTTAATTGCAGTATTATTTTTGACCAATATGCA
rJMSF047M04+ AGCTTAGCTGCATATTTCTTAATTGCAGTATTATTTTTGACCAATATGCAATCAGATGCT
____________________________________________________________
consensus AGCTTAGCTGCATATTTCTTAATTGCAGTATTATTTTTGACCAATATGCAATCAGATGCT
. : . : . : . : . : . :
rJMSF047M04+ ATGATTAGCAGTGTTATCTTATTCCCAGTTCCTGCAAATCTAAACACAGCAAGCTTGTAT
____________________________________________________________
consensus ATGATTAGCAGTGTTATCTTATTCCCAGTTCCTGCAAATCTAAACACAGCAAGCTTGTAT