Contig 008656:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005N03Sequence504006717 (2)ref|XP_009612535.1|5e-21PREDICTED: scarecrow-like protein 30 [Nicotiana tomentosiformis]682008656 (2)ref|XP_009612535.1|1e-92PREDICTED: scarecrow-like protein 30 [Nicotiana tomentosiformis]
JMSF047J10Sequence680006717 (2)ref|XP_009612535.1|4e-21PREDICTED: scarecrow-like protein 30 [Nicotiana tomentosiformis]715008656 (2)ref|XP_009612535.1|2e-90PREDICTED: scarecrow-like protein 30 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF005N03+                                                                     G
                      ____________________________________________________________
consensus                                                                        G
 
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rJMFF005N03+          GAAACGTGCCGGACGAGACGGTAGTGCCGGATAGTCCGAGAGACATTGTACTGGATCTGA
rJMSF047J10+               GTGCCGGACGAGACGGTAGTGCCGGATAGTCCGAGAGACATTGTACTGGATCTGA
                      ____________________________________________________________
consensus             GAAACGTGCCGGACGAGACGGTAGTGCCGGATAGTCCGAGAGACATTGTACTGGATCTGA
 
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rJMFF005N03+          TCAGGAAGATCAATCCCGATGTGTTTATCCATGGAGTCGTGAACGGCACATACAACACGC
rJMSF047J10+          TCAGGAAGATCAATCCCGATGTGTTTATCCATGGAGTCGTGAACGGCACATACAACACGC
                      ____________________________________________________________
consensus             TCAGGAAGATCAATCCCGATGTGTTTATCCATGGAGTCGTGAACGGCACATACAACACGC
 
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rJMFF005N03+          CGTTCTTCGTCACGCGATTCCGGGAGGCGCTCTTCCACTTCTCCTCCCTGTTCGACATCT
rJMSF047J10+          CGTTCTTCGTCACGCGATTCCGGGAGGCGCTCTTCCACTTCTCCTCCCTGTTCGACATCT
                      ____________________________________________________________
consensus             CGTTCTTCGTCACGCGATTCCGGGAGGCGCTCTTCCACTTCTCCTCCCTGTTCGACATCT
 
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rJMFF005N03+          TTGAGGCGACAGTGCCGCGTGAGGACAAGGACCGGCAGCTGTTCGAGGAAATGCTGTATG
rJMSF047J10+          TTGAGGCGACAGTGCCGCGTGAGGACAAGGACCGGCAGCTGTTCGAGGAAATGCTGTATG
                      ____________________________________________________________
consensus             TTGAGGCGACAGTGCCGCGTGAGGACAAGGACCGGCAGCTGTTCGAGGAAATGCTGTATG
 
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rJMFF005N03+          GAAGAGATGCGTTGAACGTCATAGCTTGTGAAGGATCGGAGAGAGTGGAGCGGCCAGAAA
rJMSF047J10+          GAAGAGATGCGTTGAACGTCATAGCTTGTGAAGGATCGGAGAGAGTGGAGCGGCCAGAAA
                      ____________________________________________________________
consensus             GAAGAGATGCGTTGAACGTCATAGCTTGTGAAGGATCGGAGAGAGTGGAGCGGCCAGAAA
 
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rJMFF005N03+          CGTACAAGCAATGGCAAGTTAGAAGCCTGAGAGCCGGATTCCGGCAGCTGCCGCTTGATC
rJMSF047J10+          CGTACAAGCAATGGCAAGTTAGAAGCCTGAGAGCCGGATTCCGGCAGCTGCCGCTTGATC
                      ____________________________________________________________
consensus             CGTACAAGCAATGGCAAGTTAGAAGCCTGAGAGCCGGATTCCGGCAGCTGCCGCTTGATC
 
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rJMFF005N03+          AAGAGATTACCAACTGCGTAAAGGACAAAGTGAAATCGGAATACCACAAGGATTTCTCCA
rJMSF047J10+          AAGAGATTACCAACTGCGTAAAGGACAAAGTGAAATCGGAATACCACAAGGATTTCTCCA
                      ____________________________________________________________
consensus             AAGAGATTACCAACTGCGTAAAGGACAAAGTGAAATCGGAATACCACAAGGATTTCTCCA
 
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rJMFF005N03+          TTGATGAAGATGGGAAATGGTTGTTGCAAGGATGGAAAGGGAGGGTTCTTCATGCAGTCT
rJMSF047J10+          TTGATGAAGATGGGAAATGGTTGTTGCAAGGATGGAAAGGGAGGGTTCTTCATGCAGTCT
                      ____________________________________________________________
consensus             TTGATGAAGATGGGAAATGGTTGTTGCAAGGATGGAAAGGGAGGGTTCTTCATGCAGTCT
 
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rJMFF005N03+          CATGTTGGAAACCTATTAACTAGTACGATTCCCGAAATCAATATTGTTAGAGATTAAGAT
rJMSF047J10+          CATGTTGGAAACCTATTAACTAGTACGATTCCCGAAATCAATATTGTTAGAGATTAAGAT
                      ____________________________________________________________
consensus             CATGTTGGAAACCTATTAACTAGTACGATTCCCGAAATCAATATTGTTAGAGATTAAGAT
 
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rJMFF005N03+          TCGGATTGGAATCATGCCCGTAGAGTTTGACTCCGAGCACAATTGATCCTCCAATCTTAC
rJMSF047J10+          TCGGATTGGAATCATGCCCGTAGAGTTTGACTCCGAGCACAATTGATCCTCCAATCTTNC
                      ____________________________________________________________
consensus             TCGGATTGGAATCATGCCCGTAGAGTTTGACTCCGAGCACAATTGATCCTCCAATCTTAC
 
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rJMFF005N03+          AGATGCATTAGTATCCTCCTACTCGAGGATCTTGCAGTTACATTAGTAGCCTGCACTAAG
rJMSF047J10+          AGATGCATTAGTATCCTCCTACTCGAGGATCTTGCAGTTACATTAGTAGCCTGCACTAAG
                      ____________________________________________________________
consensus             AGATGCATTAGTATCCTCCTACTCGAGGATCTTGCAGTTACATTAGTAGCCTGCACTAAG
 
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rJMFF005N03+          TTGTATTCTTTTATTCCTCAT                                       
rJMSF047J10+          TTGTATTCTTTTATTCCTCATTTTTGGTTGCTTACTACTTACTAGGAGCAGTCTAAGAAT
                      ____________________________________________________________
consensus             TTGTATTCTTTTATTCCTCATTTTTGGTTGCTTACTACTTACTAGGAGCAGTCTAAGAAT