Contig 008648:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002K15Sequence341006350 (2)730008648 (3)ref|XP_006345115.1|1e-63PREDICTED: protein LONGIFOLIA 1-like [Solanum tuberosum]
JMSF019G16Sequence537021034753008648 (3)ref|XP_004236058.1|4e-72PREDICTED: protein LONGIFOLIA 2 [Solanum lycopersicum] ref|XP_010318861.1| PREDI
JMSF046M14Sequence724008648 (3)ref|XP_006345115.1|4e-62PREDICTED: protein LONGIFOLIA 1-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF019G16+             CAGAAGGNTGAACTCTAGTCATGATGAAATCCACACGGATTATATTGCTTCGATCTG
rJMSF002K15+                                                                  TCTG
rJMSF046M14+                                                                  TCTG
                      ____________________________________________________________
consensus                CAGAAGGNTGAACTCTAGTCATGATGAAATCCACACGGATTATATTGCTTCGATCTG
 
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rJMSF019G16+          TGAGAGCACAGACCCGGATCATAGATATGTTGCTGAAATTTTATTAGCTTCCGGCCTTCT
rJMSF002K15+          TGAGAGCACAGACCCGGATCATAGATATGTTGCTGAAATTTTATTAGCTTCCGGCCTTCT
rJMSF046M14+          TGAGAGCACAGACCCGGATCATAGATATGTTGCTGAAATTTTATTAGCTTCCGGCCTTCT
                      ____________________________________________________________
consensus             TGAGAGCACAGACCCGGATCATAGATATGTTGCTGAAATTTTATTAGCTTCCGGCCTTCT
 
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rJMSF019G16+          CCTTGGAGACCTTGGTTCAAGCACAACAACGTATCAGTTCCATTCATCTGGCTACCCGAT
rJMSF002K15+          CCTTGGAGACCTTGGTTCAAGCACAACAACGTATCAGTTCCATTCATCTGGCTACCCGAT
rJMSF046M14+          CCTTGGAGACCTTGGTTCAAGCACAACAACGTATCAGTTCCATTCATCTGGCTACCCGAT
                      ____________________________________________________________
consensus             CCTTGGAGACCTTGGTTCAAGCACAACAACGTATCAGTTCCATTCATCTGGCTACCCGAT
 
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rJMSF019G16+          CAATCCCGAGTTGTTTTCTGTTCTGGAACAAACCAAGGAAAGCACTTTAGGCAAGGAAGA
rJMSF002K15+          CAATCCCGAGTTGTTTTCTGTTCTGGAACAAACCAAGGAAAGCACTTTAGGCAAGGAAGA
rJMSF046M14+          CAATCCCGAGTTGTTTTCTGTTCTGGAACAAACCAAGGAAAGCACTTTAGGCAAGGAAGA
                      ____________________________________________________________
consensus             CAATCCCGAGTTGTTTTCTGTTCTGGAACAAACCAAGGAAAGCACTTTAGGCAAGGAAGA
 
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rJMSF019G16+          ATGCGCCAAAGAAAACAGCAACAAGGCCAAGGAGAAGATCCATAGGAAGCTCATCTTTGA
rJMSF002K15+          ATGCGCCAAAGAAAACAGCAACAAGGCCAAGGAGAAGATCCATAGGAAGCTCATCTTTGA
rJMSF046M14+          ATGCGCCAAAGAAAACAGCAACAAGGCCAAGGAGAAGATCCATAGGAAGCTCATCTTTGA
                      ____________________________________________________________
consensus             ATGCGCCAAAGAAAACAGCAACAAGGCCAAGGAGAAGATCCATAGGAAGCTCATCTTTGA
 
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rJMSF019G16+          TTTTGTCAATGAACTCCTTGCTGCAAAATTTGCTTTAGTAGGACCCTTTTCTGAGCCATG
rJMSF002K15+          TTTTGTCAATGAACTCCTTGCTGCAAAATTGGCTTTAGTAGGACCCTTTTCTGAGCCATG
rJMSF046M14+          TTTTGTCAATGAACTCCTTGCTGCAAAATTGGCTTTAGTAGGACCCTTTTCTGAGCCATG
                      ____________________________________________________________
consensus             TTTTGTCAATGAACTCCTTGCTGCAAAATTGGCTTTAGTAGGACCCTTTTCTGAGCCATG
 
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rJMSF019G16+          GCTAAGGCCACGGGTGGCAGCCATGAAAGCCCCGAATTCACAAAAGCTTCTGAGAGAGTT
rJMSF002K15+          GCTAAGGCCACGGGTGGCAGCCATGAAAGCCCCGAATTCACAAAAGCTTCTGAGAGAGTT
rJMSF046M14+          GCTAAGGCCACGGGTGGCAGCCATGAAAGCCCCGAATTCACAAAAGCTTCTGAGAGAGTT
                      ____________________________________________________________
consensus             GCTAAGGCCACGGGTGGCAGCCATGAAAGCCCCGAATTCACAAAAGCTTCTGAGAGAGTT
 
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rJMSF019G16+          ATGTGCAGAAATAGAACAGCTCCAGACTAAACCATCCAGATGCTCCTTGGACCAAGATGA
rJMSF002K15+          ATGTGCAGAAATAGAACAGCTCCAGACTAAACCATCCAGATGCTCCTTGGACCAAGATGA
rJMSF046M14+          ATGTGCAGAAATAGAACAGCTCCAGACTAAACCATCCAGATGCTCCTTGGACCAAGATGA
                      ____________________________________________________________
consensus             ATGTGCAGAAATAGAACAGCTCCAGACTAAACCATCCAGATGCTCCTTGGACCAAGATGA
 
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rJMSF019G16+          AGATGATGAGCCAGAAAGTTGGTCAGATTTCGCGGCTGAAACTTCAAACATTGTTCTTTC
rJMSF002K15+          AGATGATGAGCCAGAAAGTTGGTCAGATTTCGCGGCTGAAACTTCAAACATTGTTCTTTC
rJMSF046M14+          AGATGATGAGCCAGAAAGTTGGTCAGATTTCGCGGCTGAAACTTCAAACATTGTTCTTTC
                      ____________________________________________________________
consensus             AGATGATGAGCCAGAAAGTTGGTCAGATTTCGCGGCTGAAACTTCAAACATTGTTCTTTC
 
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rJMSF019G16+          TTTAGAGCGATTAGTCTTTAAAGATTTAGTTGATGAGATAGTAAGGGGTGATGGTAACAG
rJMSF002K15+          TTTAGAGCGATTAGTCTTTAAAGATTTAGTTGATGAGATAGTAAGGGGTGATGGTAACAG
rJMSF046M14+          TTTAGAGCGATTAGTCTTTAAAGATTTAGTTGATGAGATAGTAAGGGGTGATGGTAACAG
                      ____________________________________________________________
consensus             TTTAGAGCGATTAGTCTTTAAAGATTTAGTTGATGAGATAGTAAGGGGTGATGGTAACAG
 
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rJMSF019G16+          TTTGAGAACCAAGCCAACCAGACAGAAGCAACTCTTCAAAAAATAGCTTGTTTCTAATTG
rJMSF002K15+          TTTGAGAACCAAGCCAACCAGACAGAAGCAACTCTTCAAAAAATAGCTTGTTTCTAATTG
rJMSF046M14+          TTTGAGAACCAAGCCAACCAGACAGAAGCAACTCTTCAAAAAATAGCTTGTTTCTAATTG
                      ____________________________________________________________
consensus             TTTGAGAACCAAGCCAACCAGACAGAAGCAACTCTTCAAAAAATAGCTTGTTTCTAATTG
 
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rJMSF019G16+          CTTATTATTCCATTTTCTTGTATCTTTCTTTTTCATTACCTTTCTGGCTTTTGCTAAGAG
rJMSF002K15+          CTTATTATTCCATTTTCTTGTATCTTTCTTTTTCATTACCTTTCTGGCTTTTGCTAAGAG
rJMSF046M14+          CTTATTATTCCATTTTCTTGTATCTTTCTTTTTCATTACCTTTCTGGCTTTTGCTAAGAG
                      ____________________________________________________________
consensus             CTTATTATTCCATTTTCTTGTATCTTTCTTTTTCATTACCTTTCTGGCTTTTGCTAAGAG
 
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rJMSF019G16+          TACAACATTCATGAATTCATATTGTAGTTCT                             
rJMSF002K15+          TACAACATTCATGAATTCATATTGTAGTTCTTGGATGGAAAGTAAAGGGGAAACCCCCT 
rJMSF046M14+          TACAACATTCATGAATTCATATTGTAGTTCTTGGATGGAAAGTAAAGGGGAAACCCCCTG
                      ____________________________________________________________
consensus             TACAACATTCATGAATTCATATTGTAGTTCTTGGATGGAAAGTAAAGGGGAAACCCCCTG