Contig 008641:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-                         GTAGATTTTCACGTCGCTTAATATCCTCACTACTCATCCCCTCTCT
JMSF045J08-                   GATGCAGTAGATTTTCACGTCGCTTAATATCCTCACTACTCATCCCCTCTCT
                      ____________________________________________________________
consensus                     GATGCAGTAGATTTTCACGTCGCTTAATATCCTCACTACTCATCCCCTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           CTCTCTCTCTCTCTCTCTGTAACTTTGTTTCTCTCACTAGAATGCCTCCTCAGGTTGATC
JMSF045J08-           CTCTCTCTCTCTCTCTCTGTAACTTTGTTTCTCTCACTAGAATGCCTCCTCAGGTTGATC
                      ____________________________________________________________
consensus             CTCTCTCTCTCTCTCTCTGTAACTTTGTTTCTCTCACTAGAATGCCTCCTCAGGTTGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           TGGAAACGTTAGTCTCGGCCTGCGCCGGCGGCGGAACGGATCGGAAAATCGCATGCGAAA
JMSF045J08-           TGGAAACGTTAGTCTCGGCCTGCGCCGGCGGCGGAACGGATCGGAAAATCGCATGCGAAA
                      ____________________________________________________________
consensus             TGGAAACGTTAGTCTCGGCCTGCGCCGGCGGCGGAACGGATCGGAAAATCGCATGCGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           CATTGGTGGAAGATAACGCGGCAGACAAGGAAGACAGTTCCGACGACGACNATGCCGGAA
JMSF045J08-           CATTGGTGGAAGATAACGCGGCAGACAAGGAAGACAGTTCCGACGACGACNATGCCGGAA
                      ____________________________________________________________
consensus             CATTGGTGGAAGATAACGCGGCAGACAAGGAAGACAGTTCCGACGACGACNATGCCGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           GGGAAGCGCCGCCGGATTTTCCGCCGGAGTCTTTCTGGCTGTCCAAAGACGCCGAGCTGG
JMSF045J08-           GGGAAGCGCCGCCNGATTTTCCGCCGGAGTCTTTCTGGCTGTCCAAAGACGCCGAGCTGG
                      ____________________________________________________________
consensus             GGGAAGCGCCGCCGGATTTTCCGCCGGAGTCTTTCTGGCTGTCCAAAGACGCCGAGCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           ATTGGTTCGACCGGAACGCTTTTCTGGAGCGGAAGGAGTCGGCGAAGGGAATAAACTCGA
JMSF045J08-           ATTGGTTCGACCGGAACGCTTTTCTGGAGCGGAAGGAGTCGGCGAAGGGAATAAACTCGA
                      ____________________________________________________________
consensus             ATTGGTTCGACCGGAACGCTTTTCTGGAGCGGAAGGAGTCGGCGAAGGGAATAAACTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           ACTCGAACCCGACGACGGCCCACCCGAATTTGAACCCGGGTTCGAATTCGAGCTCGCAGC
JMSF045J08-           ACTCGAACCCGACGACGGCCCACCCGAATTTGAACCCGGGTTCGAATTCGAGCTCGCAGC
                      ____________________________________________________________
consensus             ACTCGAACCCGACGACGGCCCACCCGAATTTGAACCCGGGTTCGAATTCGAGCTCGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           GGTTTTTGAAGTCCAAAGCTTCGCTGCTCTTCGGGCTGCCGAAGACGCANAAGATGAACT
JMSF045J08-           GGTTTTTGAAGTCCAAAGCTTCGCTGCTCTTCGGGCTGCCGAAGACGCANAAGATGAACT
rJMSF045J08+                                        TCGGGCTGCCGAAGACGCAGAAGATGAACT
                      ____________________________________________________________
consensus             GGTTTTTGAAGTCCAAAGCTTCGCTGCTCTTCGGGCTGCCGAAGACGCAGAAGATGAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           ACGTCTGGAAAACCTGTAGCAAACCGGCCAATATCCGGCTTTTCCCGGCGAAGCGGACCG
JMSF045J08-           ACGTCTGGAAAACCTGTAGCAAACCGGCCAATATCCGGCTTTTCCCGGCGAAGCGGACCG
rJMSF045J08+          ACGTCTGGAAAACCTGTAGCAAACCGGCCAATATCCGGCTTTTCCCGGCGAAGCGGACCG
                      ____________________________________________________________
consensus             ACGTCTGGAAAACCTGTAGCAAACCGGCCAATATCCGGCTTTTCCCGGCGAAGCGGACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           AGTCGATCGGAAAAGTCGTGGCCGAACCGTCGTCTCCGAAGGTTTCGTGTATGGGAAGAG
JMSF045J08-           AGTCGATCGGAAAAGTCGTGGCCGAACCGTCGTCTCCGAAGGTTTCGTGTATGGGAAGAG
rJMSF045P15+                                                  GGTTTCGTGTATGGGAAGAG
rJMSF045J08+          AGTCGATCGGAAAAGTCGTGGCCGAACCGTCGTCTCCGAAGGTTTCGTGTATGGGAAGAG
                      ____________________________________________________________
consensus             AGTCGATCGGAAAAGTCGTGGCCGAACCGTCGTCTCCGAAGGTTTCGTGTATGGGAAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           TCAGATCGAAGCGCGGATGCCGGAAATCTTTGTCGACTGGAGAAAAACCGACTGAGGATC
JMSF045J08-           TCAGATCGAAGCGCGGATGCCGGANATCTTTGTCGACTGGAGAAAAACCGACTGAGGATC
rJMSF045P15+          TCAGATCGAAGCGCGGATGCCGGAAATCTTTGTCGACTGGAGAAAAACCGACTGAGGATC
rJMSF045J08+          TCAGATCGAAGCGCGGATGCCGGAAATCTTTGTCGACTGGAGAAAAACCGACTGAGGATC
                      ____________________________________________________________
consensus             TCAGATCGAAGCGCGGATGCCGGAAATCTTTGTCGACTGGAGAAAAACCGACTGAGGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045P15-           ACGCGGAAACCGGC                                              
JMSF045J08-           ACGCGGAAACCGGC                                              
rJMSF045P15+          ACGCGGAAACCGGCGGAGATAAGCGGAGGACCGGGTTTTACTCGAGATTACTCTCCATGT
rJMSF045J08+          ACGCGGAAACCGGCGGAGATAAGCGGAGGACCGGGTTTTACTCGAGATTACTCTCCATGT
                      ____________________________________________________________
consensus             ACGCGGAAACCGGCGGAGATAAGCGGAGGACCGGGTTTTACTCGAGATTACTCTCCATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045P15+          TCCGGACGAACCGGAGTCACAAACCGGCTAAGAAAATCGAGGCCGGGCCAAAACGCGAGG
rJMSF045J08+          TCCGGACGAACCGGAGTCACAAACCGGCTAAGAAAATCGAGGCCGGGCCAAAACGCGAGG
                      ____________________________________________________________
consensus             TCCGGACGAACCGGAGTCACAAACCGGCTAAGAAAATCGAGGCCGGGCCAAAACGCGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045P15+          AGCCGGAGCCAGAACCGGGTCGAAAGAGCGTCAAGGCGGCAAAAATGCGCGACGTTCCGA
rJMSF045J08+          AGCCGGAGCCAGAACCGGGTCGAAAGAGCGTCAAGGCGGCAAAAATGCGCGACGTTCCGA
                      ____________________________________________________________
consensus             AGCCGGAGCCAGAACCGGGTCGAAAGAGCGTCAAGGCGGCAAAAATGCGCGACGTTCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045P15+          TAAGTGCTGAACCGGTGCCGGAGCCGCCGGGGCTAGGGGGAATGAGGCGGTTATCGTCGG
rJMSF045J08+          TAAGTGCTGAACCGGTGCCGGAGCCGCCGGGGCTAGGGGGAATGAGGCGGTTATCGTCGG
                      ____________________________________________________________
consensus             TAAGTGCTGAACCGGTGCCGGAGCCGCCGGGGCTAGGGGGAATGAGGCGGTTATCGTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045P15+          CTCGGAAGTCGGAATGCTGGGCGGCGGAGGAAATCAAAGCCGCGATTTCGGAGGCTTTTG
rJMSF045J08+          CTCGGAAGTCGGAATGCTGGGCGGCGGAGGAAATCAAAGCCGCGATTTCGGAGGCTTTTG
                      ____________________________________________________________
consensus             CTCGGAAGTCGGAATGCTGGGCGGCGGAGGAAATCAAAGCCGCGATTTCGGAGGCTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045P15+          AAACGGAACGGCGGCGCGGCGGCCACAATGGGTGAAGTTGATCGCGGCGGTCGTCGGAGT
rJMSF045J08+          AAACGGAACGGCGGCGCGGCGGCCACAATGGGTGAAGTTGATCGCGGCGGTCGTCGGAGT
                      ____________________________________________________________
consensus             AAACGGAACGGCGGCGCGGCGGCCACAATGGGTGAAGTTGATCGCGGCGGTCGTCGGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045P15+          CTTTGGTGGTAGTTGAAACTTTGCGGTCGGTCGTTGATCTGACGTGGCTTGTGGAAAATG
rJMSF045J08+          CTTTGGTGGTAGTTGAAACTTTGCGGTCGGTCGTTGATCTGACGTGGCTTGTGGAAAATG
                      ____________________________________________________________
consensus             CTTTGGTGGTAGTTGAAACTTTGCGGTCGGTCGTTGATCTGACGTGGCTTGTGGAAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045P15+          TTTGTCCTCATTTCATCAAGGTAAAAGATAATATTTTTTTACAGTTTTATTTTAGGCTTA
rJMSF045J08+          TTTGTCCTCATTTCATCAAGGTAAAAGATAATATTTTTTTACAGTTTTATTTTAGGCTTA
                      ____________________________________________________________
consensus             TTTGTCCTCATTTCATCAAGGTAAAAGATAATATTTTTTTACAGTTTTATTTTAGGCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045P15+          TTTTTATTATATAATTAGAATAGGTTATTGTAAATATATTGGGT                
rJMSF045J08+          TTTTTATTATATAATTAGAATAGGTTATTGTAAATATATTGGGTTGGAGTGGAACGGCTG
                      ____________________________________________________________
consensus             TTTTTATTATATAATTAGAATAGGTTATTGTAAATATATTGGGTTGGAGTGGAACGGCTG