Contig 008639:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035F12Sequence661010878 (2)ref|XP_010102430.1|2e-41hypothetical protein L484_000998 [Morus notabilis] gb|EXB93439.1| hypothetical p683008639 (2)ref|XP_002311607.1|8e-52hypothetical protein POPTR_0008s14910g [Populus trichocarpa] gb|EEE88974.1| hypo
JMSF045B15Sequence764010878 (2)ref|XP_010102430.1|9e-51hypothetical protein L484_000998 [Morus notabilis] gb|EXB93439.1| hypothetical p696008639 (2)ref|XP_002311607.1|4e-73hypothetical protein POPTR_0008s14910g [Populus trichocarpa] gb|EEE88974.1| hypo

Alignment

This contig is upended


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rJMSF035F12+                            CACCAAGGGAAGAGGCNGGGATGTATTGGGGTTATAGAGTGC
                      ____________________________________________________________
consensus                               CACCAAGGGAAGAGGCNGGGATGTATTGGGGTTATAGAGTGC
 
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rJMSF035F12+          GGGTATGCTTCCAATATTAGTTCAGTANTCAAGAATTGCCNGTATAAGGTATTGTACTAA
                      ____________________________________________________________
consensus             GGGTATGCTTCCAATATTAGTTCAGTANTCAAGAATTGCCNGTATAAGGTATTGTACTAA
 
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rJMSF035F12+          TGTCGGATTTTATGTGTGCATATTATCGTCCATGATGTTAACNNAATATTTCATACATAG
rJMSF045B15+                                                                    AG
                      ____________________________________________________________
consensus             TGTCGGATTTTATGTGTGCATATTATCGTCCATGATGTTAACNNAATATTTCATACATAG
 
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rJMSF035F12+          GGAGGCTATGNTCATCTGATTGGTACCTCGGAACATGGTATCACTGTCAAGTCTTCTGAA
rJMSF045B15+          GGAGGCTATGATCATCTGATTGGTACCTCGGAACATGGTATCACTGTCAAGTCTTCTGAA
                      ____________________________________________________________
consensus             GGAGGCTATGATCATCTGATTGGTACCTCGGAACATGGTATCACTGTCAAGTCTTCTGAA
 
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rJMSF035F12+          CTTAGTTNGCCATCATTCAGACACCTATTAATTGCTTTTGGTGGGCTTGCGGGCTTGGAG
rJMSF045B15+          CTTAGTTTGCCATCATTCAGACACCTATTAATTGCTTTTGGTGGGCTTGCGGGCTTGGAG
                      ____________________________________________________________
consensus             CTTAGTTTGCCATCATTCAGACACCTATTAATTGCTTTTGGTGGGCTTGCGGGCTTGGAG
 
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rJMSF035F12+          GAGTGTATTGAAGAGGACAGTAGTTTAAAGGGTAAAAATGCGCAAGATATATTTGATCAA
rJMSF045B15+          GAGTGTATTGAAGAGGACAGTAGTTTAAAGGGTAAAAATGCGCAAGATATATTTGATCAA
                      ____________________________________________________________
consensus             GAGTGTATTGAAGAGGACAGTAGTTTAAAGGGTAAAAATGCGCAAGATATATTTGATCAA
 
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rJMSF035F12+          TATTTGAACACATGTCCACATCAAGGAAGTAGAACAATCCGAACAGAGGAAGCCATCTTC
rJMSF045B15+          TATTTGAACACATGTCCACATCAAGGAAGTAGAACAATCCGAACAGAGGAAGCCATCTTC
                      ____________________________________________________________
consensus             TATTTGAACACATGTCCACATCAAGGAAGTAGAACAATCCGAACAGAGGAAGCCATCTTC
 
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rJMSF035F12+          ATATCTCTGCAGTATTTTCAAGAACCAATCAACCTGGTTTTGGGAGAGAGCTAGAGCACT
rJMSF045B15+          ATATCTCTGCAGTATTTTCAAGAACCAATCAACCTGGTTTTGGGAGAGAGCTAGAGCACT
                      ____________________________________________________________
consensus             ATATCTCTGCAGTATTTTCAAGAACCAATCAACCTGGTTTTGGGAGAGAGCTAGAGCACT
 
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rJMSF035F12+          GAATTGCGGGATCCCCAGAAACTGCTAGAATGCATACTCTTTTTGTGTATTGAGTATAGC
rJMSF045B15+          GAATTGCGGGATCCCCAGAAACTGCTAGAATGCATACTCTTTTTGTGTATTGAGTATAGC
                      ____________________________________________________________
consensus             GAATTGCGGGATCCCCAGAAACTGCTAGAATGCATACTCTTTTTGTGTATTGAGTATAGC
 
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rJMSF035F12+          AAATTCTGCATATCCTGAAAAAGCATCGGAGTATTNTAAGAACCAATCAACCGGCTTGGT
rJMSF045B15+          AAATTCTGCATATCCTGAAAAAGCATCGGAGTATTTTAAGAACCAATCAACCGGCTTGGT
                      ____________________________________________________________
consensus             AAATTCTGCATATCCTGAAAAAGCATCGGAGTATTTTAAGAACCAATCAACCGGCTTGGT
 
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rJMSF035F12+          CATCTCCTATTGAGACGGGGTTAGTAGCCAATTTCACCCTTTCACGTTAACAGTTGTCAT
rJMSF045B15+          CATCTCCTATTGAGA-GGGGTTAGTAGCCAATTTCACCCTTTCACGTTAACAGTTGTCAT
                      ____________________________________________________________
consensus             CATCTCCTATTGAGACGGGGTTAGTAGCCAATTTCACCCTTTCACGTTAACAGTTGTCAT
 
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rJMSF035F12+          CTAAACATAGTATCAGGCTGCCATTGGATTGAGCTTCTTTT                   
rJMSF045B15+          CTAAACATAGTATCAGGCTGCCATTGGATTGAGCTTCTTTTTTAGAAAGCTTAATTATGC
                      ____________________________________________________________
consensus             CTAAACATAGTATCAGGCTGCCATTGGATTGAGCTTCTTTTTTAGAAAGCTTAATTATGC