Contig 008629:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020D19Sequence651024165ref|XP_006348243.1|2e-71PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial704008629 (2)ref|XP_004244223.1|5e-69PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial
JMSF043C16Sequence774019004ref|XP_006348243.1|4e-18PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial725008629 (2)ref|XP_004244223.1|1e-53PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial

Alignment

This contig is upended


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rJMSF020D19+                                                                TCGGGA
rJMSF043C16+                                                               CTCGGGA
                      ____________________________________________________________
consensus                                                                  CTCGGGA
 
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rJMSF020D19+          ATGTGGAGGAGATGTGGAGATTATGGGGTGAACAAAAAACCGTATGCAAAAAACATATTA
rJMSF043C16+          ATGTGGAGGAGATGTGGAGATTATGGGGTGAACAAAAAACCGTATGCAAAAAACATATTA
                      ____________________________________________________________
consensus             ATGTGGAGGAGATGTGGAGATTATGGGGTGAACAAAAAACCGTATGCAAAAAACATATTA
 
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rJMSF020D19+          ACAGAGACTATATCACCATGTTGGGTTGCTTGGTGAAGCTTGGTGAGCTCGAAACAGCCG
rJMSF043C16+          ACAGAGACTATATCACCATGTTGGGTTGCTTGGTGAAGCTTGGTGAGCTCGAAACAGCCG
                      ____________________________________________________________
consensus             ACAGAGACTATATCACCATGTTGGGTTGCTTGGTGAAGCTTGGTGAGCTCGAAACAGCCG
 
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rJMSF020D19+          AGAGACTGCTAATGGTGTGGGATTCTTCCTGCCACACCTATGATTTCAGGGTTCCGAATA
rJMSF043C16+          AGAGACTGCTAATGGTGTGGGATTCTTCCTGCCACACCTATGATTTCAGGGTTCCGAATA
                      ____________________________________________________________
consensus             AGAGACTGCTAATGGTGTGGGATTCTTCCTGCCACACCTATGATTTCAGGGTTCCGAATA
 
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rJMSF020D19+          CTCTTCTGATTGGTTACTGCCAGAAGGGA-TTAGTTGAGAAAGCGGAGGAAATGCTCCTC
rJMSF043C16+          CTCTTNTGATTGGTTACTGCCAGAAGGGATTTAGTTGAGAAAGCGGAGGAAATGCTCCTC
                      ____________________________________________________________
consensus             CTCTTCTGATTGGTTACTGCCAGAAGGGATTTAGTTGAGAAAGCGGAGGAAATGCTCCTC
 
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rJMSF020D19+          GATCTGGTCAAGAAAGGCAAGCAGCCAACCCCGAACAGTTGGGCTATAATCACGGCNGGC
rJMSF043C16+          GATCTGGTCAAGAAAGGCAAGCAGCCAACCCCGAACAGTTGGGCTATAATCACGGCAGGC
                      ____________________________________________________________
consensus             GATCTGGTCAAGAAAGGCAAGCAGCCAACCCCGAACAGTTGGGCTATAATCACGGCAGGC
 
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rJMSF020D19+          TACATGGGCAGGGGCAGCATGGACAAAGCTTTTGAATGCATGAAGAAAGCTGTATCAGTA
rJMSF043C16+          TACATGGGCAGGGGCAGCATGGACAAAGCTTTTGAATGCATGAAGAAAGCTGTATCAGTA
                      ____________________________________________________________
consensus             TACATGGGCAGGGGCAGCATGGACAAAGCTTTTGAATGCATGAAGAAAGCTGTATCAGTA
 
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rJMSF020D19+          AGTCAAAACAACAAAGGGTGGAGGCCAAAAAAGGAAGTGGTTTCAACCATAGTCAATTGG
rJMSF043C16+          AGTCAAAACAACAAAGGGTGGAGGCCAAAAAAGGAAGTGGTTTCAACCATAGTCAATTGG
                      ____________________________________________________________
consensus             AGTCAAAACAACAAAGGGTGGAGGCCAAAAAAGGAAGTGGTTTCAACCATAGTCAATTGG
 
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rJMSF020D19+          CTTCAAGATCAACAGAGGGTTAGAGAGTTAGATGCTTTCATGATGGCATTAGATAGGGTT
rJMSF043C16+          CTTCAAGATCAACAGAGGGTTAGAGAGTTAGATGCTTTCATGATGGCATTAGATAGGGTT
                      ____________________________________________________________
consensus             CTTCAAGATCAACAGAGGGTTAGAGAGTTAGATGCTTTCATGATGGCATTAGATAGGGTT
 
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rJMSF020D19+          CCAAGATATAGCAACATCTCCAGCAGAGTAAAAGGCCACAGGGTTTACCCAGTGCACAAC
rJMSF043C16+          CCAAGATATAGCAACATCTCCAGCAGAGTAAAAGGCCACAGGGTTTACCCAGTGCACAAC
                      ____________________________________________________________
consensus             CCAAGATATAGCAACATCTCCAGCAGAGTAAAAGGCCACAGGGTTTACCCAGTGCACAAC
 
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rJMSF020D19+          TTCGGTTAGTGGTTGCGATTTTCCCTTGTCACCCAACAAAAAAAAAGAGCCAAGAAATGA
rJMSF043C16+          TTCGGTTAGTGGTTGCGATTTTCCCTTGTCACCCAACAAAAAAAAAGAGCCAAGAAATGA
                      ____________________________________________________________
consensus             TTCGGTTAGTGGTTGCGATTTTCCCTTGTCACCCAACAAAAAAAAAGAGCCAAGAAATGA
 
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rJMSF020D19+          GACAGTAATTTGTTTGTGTAGCTTTGAATTTTTCTCAGTTTTTGCCTTTACTGTTCCTTG
rJMSF043C16+          GACAGTAATTTGTTTGTGTAGCTTTGAATTTTTCTCAGTTTTTGCCTTTACTGTTCCTTG
                      ____________________________________________________________
consensus             GACAGTAATTTGTTTGTGTAGCTTTGAATTTTTCTCAGTTTTTGCCTTTACTGTTCCTTG
 
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rJMSF020D19+          TACCACCATGCCAGTTTAGTTGCTTCAGATTCAAAGAAT                     
rJMSF043C16+          TACA--CATGCCAGTTTAGTTGCTTCAGATTCAAAGAATGAAGTTGCTTAAAATAATGAT
                      ____________________________________________________________
consensus             TACCACCATGCCAGTTTAGTTGCTTCAGATTCAAAGAATGAAGTTGCTTAAAATAATGAT