| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008G10 | Sequence | 632 | 013273 (5) | ref|XP_006351760.1| | 2e-41 | PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like | 717 | 008622 (5) | ref|XP_009602277.1| | 2e-66 | PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic [Nic |
| JMSF011C13 | Sequence | 298 | 013273 (5) | 742 | 008622 (5) | ref|XP_009602277.1| | 3e-68 | PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic [Nic | |||
| JMSF014B08 | Sequence | 426 | 013273 (5) | 760 | 008622 (5) | ref|XP_009602277.1| | 1e-61 | PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic [Nic | |||
| JMSF028A07 | Sequence | 713 | 013273 (5) | ref|XP_006351760.1| | 4e-38 | PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like | 738 | 008622 (5) | ref|XP_009602277.1| | 2e-72 | PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic [Nic |
| JMSF041L07 | Sequence | 745 | 013273 (5) | ref|XP_006351760.1| | 2e-64 | PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like | 629 | 008622 (5) | ref|XP_011087913.1| | 5e-44 | PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like |
This contig is upended
. : . : . : . : . : . :
rJMSF014B08+ AGGGATTGGGTGAGCCTTTGTGCTTTGCAGCTTTCGGTCCATTCGCTACTACTGC
____________________________________________________________
consensus AGGGATTGGGTGAGCCTTTGTGCTTTGCAGCTTTCGGTCCATTCGCTACTACTGC
. : . : . : . : . : . :
rJMSF014B08+ TTTTTACTTGCTTCAGAGCAGTACTAGCATATTACCCATCTCCGGTACGATCCTTTCAGC
____________________________________________________________
consensus TTTTTACTTGCTTCAGAGCAGTACTAGCATATTACCCATCTCCGGTACGATCCTTTCAGC
. : . : . : . : . : . :
rJMSF014B08+ ATCCGTTCTTGTCGGTCTGACAACCTCCCTCATCTTATTCTGTAGTCACTTTCATCAGGT
____________________________________________________________
consensus ATCCGTTCTTGTCGGTCTGACAACCTCCCTCATCTTATTCTGTAGTCACTTTCATCAGGT
. : . : . : . : . : . :
rJMSF014B08+ AACCTTGCCTGCCCCTCCATGTCTCGGTTACTCTTGCGGTGTCTATGGTGCTAACACGT-
rJMSF041L07+ TGACAACCTCCCTCATNTTATTCNGTA
____________________________________________________________
consensus AACCTTGCCTGCCCCTCCATGTCTCGGTTACTCTTGCGGTGTCTCTGGTGTTATTCCGTA
. : . : . : . : . : . :
rJMSF014B08+ GATGCATAATTCAGATAGACGACGACAAGGCTGTGGGAAAATATTCTCCTCTGGTCAGGC
rJMFF008G10+ TCAGATAGACGACGACAAGGCTGTGGGAAAATATTCTCCTCTGGTCAGGC
rJMSF011C13+ TCAGATAGACGACGACAAGGCTGTGGGAAAATATTCTCCTCTGGTCAGGC
rJMSF028A07+ TCAGATAGACGACGACAAGGCTGTGGGAAAATATTCTCCTCTGGTCAGGC
rJMSF041L07+ GTCACTTTCATCAGATAGACGACGACAAGGCTGTGGGAAAATATTCTCCTCTGGTCAGGC
____________________________________________________________
consensus GTTGCTTTCTTCAGATAGACGACGACAAGGCTGTGGGAAAATATTCTCCTCTGGTCAGGC
. : . : . : . : . : . :
rJMSF014B08+ TCGGTACAAAAACAGGCGCAGAAGTCGTGAAAGCATCTGTCATGGCACTCTATTCGCTCA
rJMFF008G10+ TCGGTACAAAAACAGGCGCAGAAGTNGTGAAAGCATCTGTCATGGCACTNTATTCGCTCA
rJMSF011C13+ TCGGTACAAAAACAGGCGCAGAAGTCGTGAAAGCATCTGTCATGGCACTCTATTCGCTCA
rJMSF028A07+ TCGGTACAAAAACAGGCGCAGAAGTCGTGAAAGCATCTGTCATGGCACTCTATTCGCTCA
rJMSF041L07+ TCGGTACAAAAACAGGCGCAGAAGTCGTGAAAGCATCTGTCATGGCACTCTATTCGCTCA
____________________________________________________________
consensus TCGGTACAAAAACAGGCGCAGAAGTCGTGAAAGCATCTGTCATGGCACTCTATTCGCTCA
. : . : . : . : . : . :
rJMSF014B08+ CGATTATTCTCGGCTTTACCAAAACTCTTCCTTCTGCAAGCATT----------------
rJMFF008G10+ CGATTATTCTCGGCTTTACCAAAACTNTTCCTTCTGCAAGCATT----------------
rJMSF011C13+ CGATTATTCTCGGCTTTACCAAAACTCTTCCTTCTGCAAGCATT----------------
rJMSF028A07+ CGATTATTCTCGGCTTTACCAAAACTCTTCCTTCTGCAAGCATT----------------
rJMSF041L07+ CGATTATTCTCGGCTTTACCAAAACTCTTCCTTCTGCAAGCATTTTACTTTTTTTGTTGC
____________________________________________________________
consensus CGATTATTCTCGGCTTTACCAAAACTCTTCCTTCTGCAAGCATT----------------
. : . : . : . : . : . :
rJMSF014B08+ --ATTCTCTCTGTCCTAACAATTCCAATGGGAAGAATGGTGATTAGCTATGTGGAAAAGA
rJMFF008G10+ --ATTCTCTCTGTCCTAACAATTCCAATGGGAAGAATGGTGATTAGCTATGTGGAAAAGA
rJMSF011C13+ --ATTCTCTCTGTCCTAACAATTCCAATGGGAAGAATGGTGATTAGCTATGTGGAAAAGA
rJMSF028A07+ --ATTCTCTCTGTCCTAACAATTCCAATGGGAAGAATGGTGATTAGCTATGTGGAAAAGA
rJMSF041L07+ AGATTCTCTCTGTCCTAACAATTCCAATGGGAAGAATGGTGATTAGCTATGTGGAAAAGA
____________________________________________________________
consensus --ATTCTCTCTGTCCTAACAATTCCAATGGGAAGAATGGTGATTAGCTATGTGGAAAAGA
. : . : . : . : . : . :
rJMSF014B08+ ACCATGAAGACAAAACAAAGATCTTTATGGCAAAGTATTACTGTGTGAGACTCCATGCTC
rJMFF008G10+ ACCATGAAGACAAAACAAAGATCTTTATGGCAAAGTATTACTGTGTGAGACTCCATGCTC
rJMSF011C13+ ACCATGAAGACAAAACAAAGATCTTTATGGCAAAGTATTACTGTGTGAGACTCCATGCTC
rJMSF028A07+ ACCATGAAGACAAAACAAAGATCTTTATGGCAAAGTATTACTGTGTGAGACTCCATGCTC
rJMSF041L07+ ACCATGAAGACAAAACAAAGATCTTTATGGCAAAGTATTACTGTGTGAGACTCCATGCTC
____________________________________________________________
consensus ACCATGAAGACAAAACAAAGATCTTTATGGCAAAGTATTACTGTGTGAGACTCCATGCTC
. : . : . : . : . : . :
rJMSF014B08+ TGTTTGGTGCTACTTTGGCTGCTGGATTGGTGGTGGCTAGATTCTTTGCAAGGAACTACA
rJMFF008G10+ TGTTTGGTGCTACTTTGGCTGCTGGATTGGTGGTGGCTAGATTCTTTGCAAGGAACTACA
rJMSF011C13+ TGTTTGGTGCTACTTTGGCTGCTGGATTGGTGGTGGCTAGATTCTTTGCAAGGAACTACA
rJMSF028A07+ TGTTTGGTGCTACTTTGGCTGCTGGATTGGTGGTGGCTAGATTCTTTGCAAGGAACTACA
rJMSF041L07+ TGTTTGGTGCTACTTTGGCTGCTGGATTGGTGGTGGCTAGATTCTTTGCAAGGAACTACA
____________________________________________________________
consensus TGTTTGGTGCTACTTTGGCTGCTGGATTGGTGGTGGCTAGATTCTTTGCAAGGAACTACA
. : . : . : . : . : . :
rJMSF014B08+ ACATGAGGCCTGTTCTTCTCACCTGATCATCACCCCCCACCCCCCACACCATCATTTTAG
rJMFF008G10+ ACATGAGGCCTGTTCTTCTCACCTGATCATCACCCCCCACCCCCCACACCATCATTTTAG
rJMSF011C13+ ACATGAGGCCTGTTCTTCTCACCTGATCATCACCCCCCACCCCCCACACCATCATTTTAG
rJMSF028A07+ ACATGAGGCCTGTTCTTCTCACCTGATCATCACCCCCCACCCCCCACACCATCATTTTAG
rJMSF041L07+ ACATGAGGCCTGTTCTTCTCACCTGATCATCACCCCCCACCCCCCACACCATCATTTTAG
____________________________________________________________
consensus ACATGAGGCCTGTTCTTCTCACCTGATCATCACCCCCCACCCCCCACACCATCATTTTAG
. : . : . : . : . : . :
rJMSF014B08+ AGTTCATCAGATTAGAATGGAACATCATGTGTATATGTATTTGGCTATTCGCATCGCTAA
rJMFF008G10+ AGTTCATCAGATTAGAATGGAACATCATGTGTATATGTATTTGGCTATTCGCATCGCTAA
rJMSF011C13+ AGTTCATCAGATTAGAATGGAACATCATGTGTATATGTATTTGGCTATTCGCATCGCTAA
rJMSF028A07+ AGTTCATCAGATTAGAATGGAACATCATGTGTATATGTATTTGGCTATTCGCATCGCTAA
rJMSF041L07+ AGTTCATCAGATTAGAATGGAACATCATGTGTATATGTATTTGGCTATTCGCATCGCTAA
____________________________________________________________
consensus AGTTCATCAGATTAGAATGGAACATCATGTGTATATGTATTTGGCTATTCGCATCGCTAA
. : . : . : . : . : . :
rJMSF014B08+ ATTATTCTGTAGCATCATGTCCTGTTTCGTCCGACTAATTTTGTTTTTATGACGTATTCA
rJMFF008G10+ ATTATTCTGTAGCATCATGTCCTGTTTCGTCCGACTAATTTTGTTTTTATGACGTATTCA
rJMSF011C13+ ATTATTCTGTAGCATCATGTCCTGTTTCGTCCGACTAATTTTGTTTTTATGACGTATTCA
rJMSF028A07+ ATTATTCTGTAGCATCATGTCCTGTTTCGTCCGACTAATTTTGTTTTTATGACGTATTCA
rJMSF041L07+ ATTATTCTGTAGCATCATGTCCTGTTTCGTCCGACTAATTTTGT--TTATGACGTATTCA
____________________________________________________________
consensus ATTATTCTGTAGCATCATGTCCTGTTTCGTCCGACTAATTTTGTTTTTATGACGTATTCA
. : . : . : . : . : . :
rJMSF014B08+ GTAT
rJMFF008G10+ GTATTGTAGTTTTATTACAACACAATTAAAGTA
rJMSF011C13+ GTATTGTAGTTTTATTACAACACAATTAAAGTATTATTT
rJMSF028A07+ GTAT
rJMSF041L07+ GTATTGTAGTTTTATTACAACACAATTAAAGTATTATTTTGATTCAAGTTCAATTTGACA
____________________________________________________________
consensus GTATTGTAGTTTTATTACAACACAATTAAAGTATTATTTTGATTCAAGTTCAATTTGACA