| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF035H09 | Sequence | 675 | 008619 (8) | ref|XP_009610796.1| | 2e-96 | PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloropl | 688 | 008619 (8) | ref|XP_009794133.1| | 6e-137 | PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2, chloroplas |
| JMSF041G10 | Sequence | 780 | 008619 (8) | ref|XP_009610796.1| | 3e-113 | PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloropl | 753 | 008619 (8) | ref|XP_009794133.1| | 1e-136 | PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2, chloroplas |
| JMSF042G10 | Sequence | 647 | 008619 (8) | ref|XP_009610796.1| | 1e-75 | PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloropl | 798 | 008619 (8) | ref|XP_009610796.1| | 6e-140 | PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloropl |
| JMSF052P07 | Sequence | 678 | 008619 (8) | ref|XP_009610796.1| | 5e-77 | PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloropl | 881 | 008619 (8) | ref|XP_009610796.1| | 7e-142 | PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloropl |
This contig is upended
. : . : . : . : . : . :
JMSF052P07- GACGGGGGTCTATCCTTATTCCTTACATTACACAGCTACACTGTT
____________________________________________________________
consensus GACGGGGGTCTATCCTTATTCCTTACATTACACAGCTACACTGTT
. : . : . : . : . : . :
JMSF052P07- AGGAAATAGGAATAGGCAATTGCTTTGGTCTTCCTTACTCCGTCACGCCTTCCGCTCTCA
JMSF042G10- ATAGGCAATTGCTTTGGTCTTCCTTACTCCNTCACGCCTTCCGCTCTCA
JMSF041G10- ATAGGCAATTGCTTTGGTCTTCCTTACTCCGTCACGCCTTCCGCTCTCA
____________________________________________________________
consensus AGGAAATAGGAATAGGCAATTGCTTTGGTCTTCCTTACTCCGTCACGCCTTCCGCTCTCA
. : . : . : . : . : . :
JMSF052P07- CTCACGACTCGCTCAATCCAATCCTTCACT--GCTCTTCAGTTCTTCATATATCACTCGT
JMSF035H09- ATCACTCGT
JMSF042G10- CTCACGACTCGCTCAATCCAATCCTTCACGTGCGTCTTCAGTTCTTCATATATCACTCGT
JMSF041G10- CTCACGACTCGCTCAATCCAATCCTTCACT--GCTCTTCAGTTCTTCATATATCACTCGT
rJMSF052P07+ CTTCAGTTCTTCATATATCACTCGT
____________________________________________________________
consensus CTCACGACTCGCTCAATCCAATCCTTCACT--GCTCTTCAGTTCTTCATATATCACTCGT
. : . : . : . : . : . :
JMSF052P07- CGGTGACAGGCAGAGAGATAAGAGGCTTCAGAGACGACCGCCTGCCTTGTCGTCCTTGCT
JMSF035H09- CGGTGACAGGCAGAGAGATAAGAGGCTTCAGAGACGACCGCCTGCCTTGTCGTCCTTGCT
JMSF042G10- CGGTGACAGGCAGAGAGATAAGAGGCTTCAGAGACGACCGCCTGCCTTGTCGTCCTTGCT
JMSF041G10- CGGTGACAGGCAGAGAGATAAGAGGCTTCAGAGACGACCGCCTGCCTTGTCGTCCTTGCT
rJMSF052P07+ CGGTGACAGGCAGAGAGATANGAGGCTTCAGAGACGACCGCCTGCCTTGTCGTCCTTGCT
____________________________________________________________
consensus CGGTGACAGGCAGAGAGATAAGAGGCTTCAGAGACGACCGCCTGCCTTGTCGTCCTTGCT
. : . : . : . : . : . :
JMSF052P07- CGCCCTCGACTTTCATGTCAATGTTGTATTCTTTATCTCCTGCTAAAAGTTGCATGGTAC
JMSF035H09- CGCCCTCGACTTTCATGTCAATGTTGTATTCTTTATCTCCTGCTAAAAGTTGTATGGTAC
JMSF042G10- CGCCCTCGACTTTCATGTCAATGTTGTATTCTTTATCTCCTGCTAAAAGTTGCATGGTAC
JMSF041G10- CGCCCTCGACTTTCATGTCAATGTTGTATTCTTTATCTCCTGCTAAAAGTTGCATGGTAC
rJMSF052P07+ CGCCCTCGACTTTCATGTCAATGTTGTATTCTTTATCTCCTGCTAAAAGTTGCATGGTAC
rJMSF042G10+ CTAAAAGTTGCATGGTAC
____________________________________________________________
consensus CGCCCTCGACTTTCATGTCAATGTTGTATTCTTTATCTCCTGCTAAAAGTTGCATGGTAC
. : . : . : . : . : . :
JMSF052P07- CCTATCCAAGATGCCCCTGTTCTCATCCAAGACATTTAGCTCCTGTGAGGATTAGAGCAT
JMSF035H09- CCTATCCAAGATGCCCCTGTTCTCATCCAAGACATTTAGCTCCTGTGAGGATTAGAGCGT
JMSF042G10- CCTATCCAAGATGCCCCTGTTCTCATCCAAGACATTTAGCTCCTGTGAGGATTAGAGCAT
JMSF041G10- CCTATCCAAGATGCCCCTGTTCTCATCCAAGACATTTAGCTCCTGTGAGGATTAGAGCAT
rJMSF035H09+ TCCAAGACATTTAGCTCCTGTGAGGATTAGAGCGT
rJMSF052P07+ CCTATCCAAGATGCCCCTGTTCTCATCCAAGACATTTAGCTCCTGTGAGGATTAGAGCAT
rJMSF042G10+ CCTATCCAAGATGCCCCTGTTCTCATCCAAGACATTTAGCTCCTGTGAGGATTAGAGCAT
rJMSF041G10+ CCAAGACATTTAGCTCCTGTGAGGATTAGAGCAT
____________________________________________________________
consensus CCTATCCAAGATGCCCCTGTTCTCATCCAAGACATTTAGCTCCTGTGAGGATTAGAGCAT
. : . : . : . : . : . :
JMSF052P07- CAGCTTCACTGCCAGAGCCTAATGGAGCCAAAGTTGAGTACACTCCATGGTTGGTCGCAG
JMSF035H09- CAGCTTCACTGCCAGAGCCTAATGGAGCCAAAGTTGAGTATACTCCATGGTTGGTCGCAG
JMSF042G10- CAGCTTCACTGCCAGAGCCTAATGGAGCCAAAGTTGAGTACACTCCATGGTTGGTCGCAN
JMSF041G10- CAGCTTCACTGCCAGAGCCTAATGGAGCCAAAGTTGAGTACACTCCATGGTTGGTCGCAG
rJMSF035H09+ CAGCTTCACTGCCAGAGCCTAATGGAGCCAAAGTTGAGTATACTCCATGGTTGGTCGCAG
rJMSF052P07+ CAGCTTCACTGCCAGAGCCTAATGGAGCCAAAGTTGAGTACACTCCATGGTTGGTCGCAG
rJMSF042G10+ CAGCTTCACTGCCAGAGCCTAATGGAGCCAAAGTTGAGTACACTCCATGGTTGGTCGCAG
rJMSF041G10+ CAGCTTCACTGCCAGAGCCTAATGGAGCCAAAGTTGAGTACACTCCATGGTTGGTCGCAG
____________________________________________________________
consensus CAGCTTCACTGCCAGAGCCTAATGGAGCCAAAGTTGAGTACACTCCATGGTTGGTCGCAG
. : . : . : . : . : . :
JMSF052P07- GACTGGGGAACCCTGGAAACAAGTACCATGGAACGCGGCACAATGTTGGTTTTGAAATGA
JMSF035H09- GACTGGGGAACCCTGGAAACAAGTACCATGGAACGCGGCACAATGTTGGTTTTGAAATGA
JMSF042G10- GACTGGGGAACCCTGGAAACAANTACCATGGAACGCGGCACAATGTTGGTTTTGAAATGA
JMSF041G10- GACTGGGGAACCCTGGAAACAAGTACCATGGAACGCGGCACAATGTTGGTTTTGAAATGA
rJMSF035H09+ GACTGGGGAACCCTGGAAACAAGTACCATGGAACGCGGCACAATGTTGGTTTTGAAATGA
rJMSF052P07+ GACTGGGGAACCCTGGAAACAAGTACCATGGAACGCGGCACAATGTTGGTTTTGAAATGA
rJMSF042G10+ GACTGGGGAACCCTGGAANCAAGTACCATGGAACGCGGCACAATGTTGGTTTTGAAATGA
rJMSF041G10+ GACTGGGGAACCCTGGAAACAAGTACCATGGAACGCGGCACAATGTTGGTTTTGAAATGA
____________________________________________________________
consensus GACTGGGGAACCCTGGAAACAAGTACCATGGAACGCGGCACAATGTTGGTTTTGAAATGA
. : . : . : . : . : . :
JMSF052P07- TAGATCAGATTTCTCAAGAAGAGGGCATTTTGTTGAACACAATACAGTCAAAAGCATTGA
JMSF035H09- TTGATCAGATTTCTCAAGAAGAGGGCATTTTGTTGAACACAATACAGTCAAAAGCATTGA
JMSF042G10- TAGATCANATTTCTCAAGAAGAGGGCATTTTGTTGAACACAATACAGNCAAAAGCNTTGA
JMSF041G10- TAGATCAGATTTCTCAAGAAGAGGGCATTTTGTTGAACACAATACAGTCAAAAGCATTGA
rJMSF035H09+ TTGATCAGATTTCTCAAGAAGAGGGCATTTTGTTGAACACAATACAGTCAAAAGCATTGA
rJMSF052P07+ TAGATCAGATTTCTCAAGAAGAGGGCATTTTGTTGAACACAATACAGTCAAAAGCATTGA
rJMSF042G10+ TAGATCAGATTTCTCAAGAAGAGGGCATTTTGTTGAACACAATACAGTCAAAAGCATTGA
rJMSF041G10+ TAGATCAGATTTCTCAAGAAGAGGGCATTTTGTTGAACACAATACAGTCAAAAGCATTGA
____________________________________________________________
consensus TAGATCAGATTTCTCAAGAAGAGGGCATTTTGTTGAACACAATACAGTCAAAAGCATTGA
. : . : . : . : . : . :
JMSF052P07- TTGGAATAGGTTCTATTGGAGAGGTGCCAGTGGTATTAGCAAAGCCTCAGACTTATATGA
JMSF035H09- TTGGAATAGGTTCTATTGGAGAGGTGCCAGTGGTATTAGCAAAGCCTCAGACTTATATGA
JMSF042G10- TTGGAATAGGTTCTATTGGAGAGGTGCCAGTGGTATTAGCAAAGCCTCAGACTTATATGA
JMSF041G10- TTGGAATAGGTTCTATTGGAGAGGTGCCAGTGGTATTAGCAAAGCCTCAGACTTATATGA
rJMSF035H09+ TTGGAATAGGTTCTATTGGAGAGGTGCCAGTGGTATTAGCAAAGCCTCAGACTTATATGA
rJMSF052P07+ TTGGAATAGGTTCTATTGGAGAGGTGCCAGTGGTATTAGCAAAGCCTCAGACTTATATGA
rJMSF042G10+ TTGGAATAGGTTCTATTGGAGAGGTGCCAGTGGTATTAGCAAAGCCTCAGACTTATATGA
rJMSF041G10+ TTGGAATAGGTTCTATTGGAGAGGTGCCAGTGGTATTAGCAAAGCCTCAGACTTATATGA
____________________________________________________________
consensus TTGGAATAGGTTCTATTGGAGAGGTGCCAGTGGTATTAGCAAAGCCTCAGACTTATATGA
. : . : . : . : . : . :
JMSF052P07- ATTTCAGTGGAGAATCGGTTGGACAACTTGCTGCATATTATCAAGTACCCTTGCGACATA
JMSF035H09- ATTTCAGTGGAGAATCGGTTGGACAACTTGCTGCATATTATCAAGTACCCTTGCGACATA
JMSF042G10- ATTTCAGTGGAGAATCGGTTGGACAACTTGCTGCATATTATCANGTACCCTTGNGACATA
JMSF041G10- ATTTCAGTGGAGAATCGGTTGGACAACTTGCTGCATATTATCAAGTACCCTTGCGACATA
rJMSF035H09+ ATTTCAGTGGAGAATCGGTTGGACAACTTGCTGCATATTATCAAGTACCCTTGCGACATA
rJMSF052P07+ ATTTCAGTGGAGAATCGGTTGGACAACTTGCTGCATATTATCAAGTACCCTTGCGACATA
rJMSF042G10+ ATTTCAGTGGAGAATCGGTTGGACAACTTGCTGCATATTATCAAGTACCCTTGCGACATA
rJMSF041G10+ ATTTCAGTGGAGAATCGGTTGGACAACTTGCTGCATATTATCAAGTACCCTTGCGACATA
____________________________________________________________
consensus ATTTCAGTGGAGAATCGGTTGGACAACTTGCTGCATATTATCAAGTACCCTTGCGACATA
. : . : . : . : . : . :
JMSF052P07- TCCTACTGGTTCATGACGAGATGAGTTTACCAAAT
JMSF035H09- TCCTACTGGTTCATGACGAGATGAGTTTACCAAATGGTGTTTTGAGGCTTAAGCCCAAGC
JMSF042G10- TCCTACTGGTTCATGACNAGATGAGTTTACCAAATGGTGTTTTGAGGCTTAAGCCCA
JMSF041G10- TCCTACTGGTTCATGACGAGATGAGTTTACCAAATGGTGTTTTGAGGCTTAAGCCCAAGC
rJMSF035H09+ TCCTACTGGTTCATGACGAGATGAGTTTACCAAATGGTGTTTTGAGGCTTAAGCCCAAGC
rJMSF052P07+ TCCTACTGGTTCATGACGAGATGAGTTTACCAAATGGTGTTTTGAGGCTTAAGCCCAAGC
rJMSF042G10+ TCCTACTGGTTCATGACGAGATGAGTTTACCAAATGGTGTTTTGAGGCTTAAGCCCAAGC
rJMSF041G10+ TCCTACTGGTTCATGACGAGATGAGTTTACCAAATGGTGTTTTGAGGCTTAAGCCCAAGC
____________________________________________________________
consensus TCCTACTGGTTCATGACGAGATGAGTTTACCAAATGGTGTTTTGAGGCTTAAGCCCAAGC
. : . : . : . : . : . :
JMSF035H09- GAGGACATGGTCATCATAACGGGGTGAAAAGTGTAATGGAGCATCTGGATGGTTGC
JMSF041G10- GAGGACATGGCCATCATAACGGGGTGAAAAGTGTAATGGAGCATCTGGATGGTTGCCATC
rJMSF035H09+ GAGGACATGGTCATCATAACGGGGTGAAAAGTGTAATGGAGCATCTGGATGGTTGCCATC
rJMSF052P07+ GAGGACATGGCCATCATAACGGGGTGAAAAGTGTAATGGAGCATCTGGATGGTTGCCATC
rJMSF042G10+ GAGGACATGGCCATCATAACGGGGTGAAAAGTGTAATGGAGCATCTGGATGGTTGCCATC
rJMSF041G10+ GAGGACATGGCCATCATAACGGGGTGAAAAGTGTAATGGAGCATCTGGATGGTTGCCATC
____________________________________________________________
consensus GAGGACATGGCCATCATAACGGGGTGAAAAGTGTAATGGAGCATCTGGATGGTTGCCATC
. : . : . : . : . : . :
JMSF041G10- AATTTCCACGACTTTGCATAGGAATAGGAAACCCACCGGGAGCAATGGATATGAAGGCTT
rJMSF035H09+ AATTTCCACGACTTTGCATAGGAATAGGAAACCCACCGGGAGCAATGGATATGAAGGCTT
rJMSF052P07+ AATTTCCACGACTTTGCATAGGAATAGGAAACCCACCGGGAGCAATGGATATGAAGGCTT
rJMSF042G10+ AATTTCCACGACTTTGCATAGGAATAGGAAACCCACCGGGAGCAATGGATATGAAGGCTT
rJMSF041G10+ AATTTCCACGACTTTGCATAGGAATAGGAAACCCACCGGGAGCAATGGATATGAAGGCTT
____________________________________________________________
consensus AATTTCCACGACTTTGCATAGGAATAGGAAACCCACCGGGAGCAATGGATATGAAGGCTT
. : . : . : . : . : . :
JMSF041G10- TTCTTCTCCAGA
rJMSF035H09+ TTCTTCTCCAGAAATTCAGTGAAACAGAGCGGAAACAGGTGGATGAAGCACTGAAAGAAG
rJMSF052P07+ TTCTTCTCCAGAAATTCAGTGAAACAGAGCGGAAACAGGTAGATGAAGCACTGAAAGAAG
rJMSF042G10+ TTCTTCTCCAGAAATTCAGTGAAACAGAGCGGAAACAGGTAGATGAAGCACTGAAAGAAG
rJMSF041G10+ TTCTTCTCCAGAAATTCAGTGAAACAGAGCGGAAACAGGTAGATGAAGCACTGAAAGAAG
____________________________________________________________
consensus TTCTTCTCCAGAAATTCAGTGAAACAGAGCGGAAACAGGTAGATGAAGCACTGAAAGAAG
. : . : . : . : . : . :
rJMSF035H09+ GGGCCGAGGCAGTGAGAACGCTGGTGCGAGAAGGAGTGGGCAGTAGACTAAGTAGATTTA
rJMSF052P07+ GGGCCGAGGCAGTGAGAACGCTGGTGCGAGAAGGAGTGGGCAGTAGACTAAGTAGATTTA
rJMSF042G10+ GGGCCGAGGCAGTGAGAACGCTGGTGCGAGAAGGAGTGGGCAGTAGACTAAGTAGATTTA
rJMSF041G10+ GGGCCGAGGCAGTGAGAACGCTGGTGCGAGAAGGAGTGGGCAGTAGACTAAGTAGATTTA
____________________________________________________________
consensus GGGCCGAGGCAGTGAGAACGCTGGTGCGAGAAGGAGTGGGCAGTAGACTAAGTAGATTTA
. : . : . : . : . : . :
rJMSF035H09+ ATATAGGGCAGAAATACAAGTATCACAAAGTTTGATCATATGATCT
rJMSF052P07+ ATATAGGGCAGAAGTACAAGTATCACAAAGTTTGATCATATGATCTTGAACTCATGCATG
rJMSF042G10+ ATATAGGGCAGAAGTACAAGTATCACAAAGTTTGATCATATGATCTTGAACTCATGCATG
rJMSF041G10+ ATATAGGGCAGAAGTACAAGTATCACAAAGTTTGATCATATGATCTTGAACTCATGCATG
____________________________________________________________
consensus ATATAGGGCAGAAGTACAAGTATCACAAAGTTTGATCATATGATCTTGAACTCATGCATG
. : . : . : . : . : . :
rJMSF052P07+ TACCTTCAGAAAGGAG
rJMSF042G10+ TACCTTCAGAAAGGAGTATTATTATATTGTTTGAACAATTTTGGGACTCCCTTGTATAGG
rJMSF041G10+ TACCTTCAGAAAGGAGTATTATTATATTGTTTG-ACAATTTTGGGACTCCCTTGTATAGG
____________________________________________________________
consensus TACCTTCAGAAAGGAGTATTATTATATTGTTTGAACAATTTTGGGACTCCCTTGTATAGG