| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF017D04 | Sequence | 340 | 008614 (6) | 722 | 008614 (6) | ref|XP_009777625.1| | 9e-88 | PREDICTED: translation initiation factor IF-3, chloroplastic-like [Nicotiana sy | |||
| JMSF028C13 | Sequence | 617 | 008614 (6) | ref|XP_010265524.1| | 3e-52 | PREDICTED: translation initiation factor IF-3, chloroplastic-like [Nelumbo nuci | 763 | 008614 (6) | ref|XP_009777625.1| | 5e-87 | PREDICTED: translation initiation factor IF-3, chloroplastic-like [Nicotiana sy |
| JMSF040M22 | Sequence | 599 | 008614 (6) | ref|XP_009777625.1| | 1e-51 | PREDICTED: translation initiation factor IF-3, chloroplastic-like [Nicotiana sy | 850 | 008614 (6) | ref|XP_011079383.1| | 8e-96 | PREDICTED: translation initiation factor IF-3, chloroplastic [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF028C13- GAGGGGAGAGG
____________________________________________________________
consensus GAGGGGAGAGG
. : . : . : . : . : . :
JMSF017D04- TGGATAAGAAGATTCATTTTTAGTGCCCAAAACATACTCCCTTCCGCCAT
JMSF040M22- TGGATAAGAAGATTCATTTTTAGTGCCCAAAACATACTCCCTTCCGCCAT
JMSF028C13- CTTGAATTTATGGATAAGAAGATTCATTTTTAGTGCCCAAAACATACTCCCTTCCGCCAT
____________________________________________________________
consensus CTTGAATTTATGGATAAGAAGATTCATTTTTAGTGCCCAAAACATACTCCCTTCCGCCAT
. : . : . : . : . : . :
JMSF017D04- GGCTGGTCTCGCCAGCAGTAGCACCTTCACATTCAAACCCTTTCTCTCTAAACCCAATCC
JMSF040M22- GGCTGGTCTCGCCAGCAGTAGCACCTTCACATTCAAACCCTTTCTCTCTAAACCCAATCC
JMSF028C13- GGCTGGTCTCGCCAGCAGTAGCACCTTCACATTCAAACCCTTTCTCTCTAAACCCAATCC
____________________________________________________________
consensus GGCTGGTCTCGCCAGCAGTAGCACCTTCACATTCAAACCCTTTCTCTCTAAACCCAATCC
. : . : . : . : . : . :
JMSF017D04- CCCCTCCTTTCCTTATCATCACTCCACCCTCTTCACCCTCCGCCTCCGCTCTCCAACCTT
JMSF040M22- CCCCTCCTTTCCTTATCATCACTCCACCCTCTTCACCCTCCGCCTCCGCTCTCCAACCTT
JMSF028C13- CCCCTCCTTTCCTTATCATCACTCCACCCTCTTCACCCTCCGCCTCCGCTCTCCAACCTT
____________________________________________________________
consensus CCCCTCCTTTCCTTATCATCACTCCACCCTCTTCACCCTCCGCCTCCGCTCTCCAACCTT
. : . : . : . : . : . :
JMSF017D04- CTTTCTCTCCACCTCCTCCTCCACCTCCACCGCCATCTCCGCCCGCTATGGCGGCGGCCG
JMSF040M22- CTTTCTCTCCACCTCCTCCTCCACCTCCACCGCCATCTCCGCCCGCTATGGCGGCGGCCG
JMSF028C13- CTTTCTCTCCACCTCCTCCTCCACCTCCACCGCCATCTCCGCCCGCTATGGCGGCGGCCG
rJMSF017D04+ TCCACNTCCTCCTCCACCTCCACCGCCATCTCCGCCCGCTATGGCGGCGGCCG
rJMSF040M22+ GGCGGCGGCCG
____________________________________________________________
consensus CTTTCTCTCCACCTCCTCCTCCACCTCCACCGCCATCTCCGCCCGCTATGGCGGCGGCCG
. : . : . : . : . : . :
JMSF017D04- TCGTCCTCGCGACTATNATGATGACGACGACGATGAAGG-CCTTGATATCTCTTCCATCA
JMSF040M22- TCGTCCTCGCGACTATNATGATGACGACGACGATGAAGG-CCTTGATATCTCTTCCATCA
JMSF028C13- TCGTCCTCGCGACTATNATGATGACGACGACGATGAAGG-CCTTGATATCTCTTCCATCA
rJMSF017D04+ TCGTCCTCGCGACTATAATGATGACGACGACGATGAAGG-CCTTGATATCTCTTCCATCA
rJMSF028C13+ TCCTCGCGACTATAATGATGACGACGACGATGAAGG-CCTTGATATCTCTTCCATCA
rJMSF040M22+ TCGTCCTCGCGACTATAATGATGACGACGACGATGAAGGCCCTTGATATCTCTTCCATCA
____________________________________________________________
consensus TCGTCCTCGCGACTATAATGATGACGACGACGATGAAGG-CCTTGATATCTCTTCCATCA
. : . : . : . : . : . :
JMSF017D04- GGTCAGACAAAGTCAGGCTTATAGATCAACAACAAAATATGGTTGGGAT
JMSF040M22- GGTCAGACAAAGTCAGGCTTATAGATCAACAACAAAATATGGTTGGGATAGTGTCAAAAA
JMSF028C13- GGTCAGACAAAGTCAGGCTTATAGATCAACAACAAAATATGGTTGGGATAGTGTCAAAAA
rJMSF017D04+ GGTCAGACAAAGTCAGGCTTATAGATCAACAACAAAATATGGTTGGGATAGTGTCAAAAA
rJMSF028C13+ GGTCAGACAAAGTCAGGCTTATAGATCAACAACAAAATATGGTTGGGATAGTGTCAAAAA
rJMSF040M22+ GGTCAGACAAAGTCAGGCTTATAGATCAACAACAAAATATGGTTGGGATAGTGTCAAAAA
____________________________________________________________
consensus GGTCAGACAAAGTCAGGCTTATAGATCAACAACAAAATATGGTTGGGATAGTGTCAAAAA
. : . : . : . : . : . :
JMSF040M22- GTGAAGCTGTTCAAAAAGCTGAGGATGCTGAACTTGATTTGGTTATTTTATCTCCGGAAG
JMSF028C13- GTGAAGCTGTTCAAAAAGCTGAGGATGCTGAACTTGATTTGGTTATTTTATCTCCGGAAG
rJMSF017D04+ GTGAAGCTGTTCAAAAAGCTGAGGATGCTGAACTTGATTTGGTTATTTTATCTCCGGAAG
rJMSF028C13+ GTGAAGCTGTTCAAAAAGCTGAGGATGCTGAACTTGATTTGGTTATTTTATCTCCGGAAG
rJMSF040M22+ GTGAAGCTGTTCAAAAAGCTGAGGATGCTGAACTTGATTTGGTTATTTTATCTCCGGAAG
____________________________________________________________
consensus GTGAAGCTGTTCAAAAAGCTGAGGATGCTGAACTTGATTTGGTTATTTTATCTCCGGAAG
. : . : . : . : . : . :
JMSF040M22- CAGACCCTCCTGTTGTTAGAATAATGGATTACAATAAATACAGATACGAACTGCAAAAGA
JMSF028C13- CAGACCCTCCTGTTGTTAGAATAATGGATTACAATAAATACAGATACGAACTGCAAAAGA
rJMSF017D04+ CAGACCCTCCTGTTGTTAGAATAATGGATTACAATAAATACAGATACGAACTGCAAAAGA
rJMSF028C13+ CAGACCCTCCTGTTGTTAGAATAATGGATTACAATAAATACAGATACGAACTGCAAAAGA
rJMSF040M22+ CAGACCCTCCTGTTGTTAGAATAATGGATTACAATAAATACAGATACGAACTGCAAAAGA
____________________________________________________________
consensus CAGACCCTCCTGTTGTTAGAATAATGGATTACAATAAATACAGATACGAACTGCAAAAGA
. : . : . : . : . : . :
JMSF040M22- AGAAAAAAGACCAGCAGAAGAAAAGTGCCGCCAGCCGCATGGATCTGAAGGAATTGAAAA
JMSF028C13- AGAAAAAAGACCAGCAGAAGAAAAGTGCCGCCAGCCGCATGGATCTGAAGGAATTGAAAA
rJMSF017D04+ AGAAAAAAGACCAGCAGAAGAAAAGTGCCGCCAGCCGCATGGATCTGAAGGAATTGAAAA
rJMSF028C13+ AGAAAAAAGACCAGCAGAAGAAAAGTGCCGCCAGCCGCATGGATCTGAAGGAATTGAAAA
rJMSF040M22+ AGAAAAAAGACCAGCAGAAGAAAAGTGCCGCCAGCCGCATGGATCTGAAGGAATTGAAAA
____________________________________________________________
consensus AGAAAAAAGACCAGCAGAAGAAAAGTGCCGCCAGCCGCATGGATCTGAAGGAATTGAAAA
. : . : . : . : . : . :
JMSF040M22- TGGGTTACAACATTGATGTGCATGATTATTCTGTGCGACTAAAAGCTGCTCAGAAGTTTC
JMSF028C13- TGGGTTACAACATTGATGTGCATGATTATTCTGTGCGACTAAAAGCTGCTCAGAAGTTTC
rJMSF017D04+ TGGGTTACAACATTGATGTGCATGATTATTCTGTGCGACTAAAAGCTGCTCAGAAGTTTC
rJMSF028C13+ TGGGTTACAACATTGATGTGCATGATTATTCTGTGCGACTAAAAGCTGCTCAGAAGTTTC
rJMSF040M22+ TGGGTTACAACATTGATGTGCATGATTATTCTGTGCGACTAAAAGCTGCTCAGAAGTTTC
____________________________________________________________
consensus TGGGTTACAACATTGATGTGCATGATTATTCTGTGCGACTAAAAGCTGCTCAGAAGTTTC
. : . : . : . : . : . :
JMSF040M22- TA
JMSF028C13- TAAAAGA
rJMSF017D04+ TAAAAGAGGGTGATAAGGTGAAAGTTATTGTGAATTTAAAGGGCCGTGAGAATGAGTTCA
rJMSF028C13+ TAAAAGAGGGTGATAAGGTGAAAGTTATTGTGAATTTAAAGGGCCGTGAGAATGAGTTCA
rJMSF040M22+ TAAAAGAGGGTGATAAGGTGAAAGTTATTGTGAATTTAAAGGGCCGTGAGAATGAGTTCA
____________________________________________________________
consensus TAAAAGAGGGTGATAAGGTGAAAGTTATTGTGAATTTAAAGGGCCGTGAGAATGAGTTCA
. : . : . : . : . : . :
rJMSF017D04+ GAAGTAAGGCTGTTGAGCTACTCAAGCAATTTCAAAATGACGTTGGAGAGGCCGCTACTC
rJMSF028C13+ GAAGTAAGGCTGTTGAGCTACTCAAGCAATTTCAAAATGACGTTGGAGAGGCCGCTACTC
rJMSF040M22+ GAAGTAAGGCTGTTGAGCTACTCAAGCAATTTCAAAATGACGTTGGAGAGGCCGCTACTC
____________________________________________________________
consensus GAAGTAAGGCTGTTGAGCTACTCAAGCAATTTCAAAATGACGTTGGAGAGGCCGCTACTC
. : . : . : . : . : . :
rJMSF017D04+ TGGAGAGCAAGAATTTCCATGACCGGAACATGTTTATAGTTCTGGTTCCGAATAAAGCTA
rJMSF028C13+ TGGAGAGCAAGAATTTCCATGACCGGAACATGTTTATAGTTCTGGTTCCGAATAAAGCTA
rJMSF040M22+ TGGAGAGCAAGAATTTCCATGACCGGAACATGTTTATAGTTCTGGTTCCGAATAAAGCTA
____________________________________________________________
consensus TGGAGAGCAAGAATTTCCATGACCGGAACATGTTTATAGTTCTGGTTCCGAATAAAGCTA
. : . : . : . : . : . :
rJMSF017D04+ TTGCACAGAAAGCTCAGGAACAGCCGAAGAAAAAGGAGAAATCAGCAACGGAAGTCTCTG
rJMSF028C13+ TTGCACAGAAAGCTCAGGAACAGCCGAAGAAAAAGGAGAAATCAGCAACGGAAGTCTCTG
rJMSF040M22+ TTGCACAGAAAGCTCAGGAACAGCCGAA-AAAAAGGAGAAATCAGCAACGGAAGTCTCTG
____________________________________________________________
consensus TTGCACAGAAAGCTCAGGAACAGCCGAAGAAAAAGGAGAAATCAGCAACGGAAGTCTCTG
. : . : . : . : . : . :
rJMSF017D04+ CTGGTGTTTGATTATCAATAATC
rJMSF028C13+ CTGGTGTTTGATTATCAATAATC
rJMSF040M22+ CTGGTGTTTGATTATCAATAATCTGGTTGAAGAAATCGAGGATGATGGTAGATTTATCAT
____________________________________________________________
consensus CTGGTGTTTGATTATCAATAATCTGGTTGAAGAAATCGAGGATGATGGTAGATTTATCAT
. : . : . : . : . : . :
rJMSF040M22+ TTTTTTGTTGTCTCAGTCTCGCTAATTCCCAATTGGCTGTGCAAATTTGAACTTCAATTG
____________________________________________________________
consensus TTTTTTGTTGTCTCAGTCTCGCTAATTCCCAATTGGCTGTGCAAATTTGAACTTCAATTG
. : . : . : . : . : . :
rJMSF040M22+ ATTCCGGCTTCATTCTTGAAGAGTATCATCTAAGATGTTTCCACTTGCACTAGATTCCTA
____________________________________________________________
consensus ATTCCGGCTTCATTCTTGAAGAGTATCATCTAAGATGTTTCCACTTGCACTAGATTCCTA
. : . : . : . : . : . :
rJMSF040M22+ TTCTATTGCCATAGTAGAAGCATAGGTGCCAAAAGTTTATTTTGTGATAAAATGTGGAAA
____________________________________________________________
consensus TTCTATTGCCATAGTAGAAGCATAGGTGCCAAAAGTTTATTTTGTGATAAAATGTGGAAA