| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040K11 | Sequence | 579 | 010285 (3) | ref|XP_009797474.1| | 7e-26 | PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest | 694 | 008612 (3) | ref|XP_004506769.1| | 1e-84 | PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Cicer arietinum] |
| JMSF002L15 | Sequence | 299 | 010285 (3) | ref|XP_009594369.1| | 1e-07 | PREDICTED: omega-3 fatty acid desaturase, chloroplastic [Nicotiana tomentosifor | 665 | 008612 (3) | emb|CDP14009.1| | 1e-70 | unnamed protein product [Coffea canephora] |
| JMSF040F08 | Sequence | 628 | 010285 (3) | ref|XP_009797474.1| | 5e-44 | PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest | 777 | 008612 (3) | emb|CDP14009.1| | 1e-77 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF002L15+ TGGATTGTCGTTTGNGATGGGACCTGT
rJMFF040K11+ GGATTGTCGTTTGTGATGGGACCTGT
rJMSF040F08+ GTGTTGGACAGCAATGGTTGCGGTCCTTGTTGGATTGTCGTTTGTGATGGGACCTGT
____________________________________________________________
consensus GTGTTGGACAGCAATGGTTGCGGTCCTTGTTGGATTGTCGTTTGTGATGGGACCTGT
. : . : . : . : . : . :
rJMSF002L15+ CCAATTGCTCAAACTCTATGGAGTTCCTTATATGGGTTTTGTAATGNGGCTGGATTTAGT
rJMFF040K11+ CCAATTGCTCAAACTCTATGGAGTTCCTTATATGGGTTTTGTAATGTGGCTGGATTTAGT
rJMSF040F08+ CCAATTGCTCAAACTCTATGGAGTTCCTTATATGGGTTTTGTAATGNGGCTGGATTTAGT
____________________________________________________________
consensus CCAATTGCTCAAACTCTATGGAGTTCCTTATATGGGTTTTGTAATGTGGCTGGATTTAGT
. : . : . : . : . : . :
rJMSF002L15+ TACCTATTTACATCCCCNCGGCCCCGAAGAAAAACTTCCCTGGTACCGTGGACAGGAATG
rJMFF040K11+ TACCTATTTACATCACCNCGGCCACGAAGAAAAACTTCCCTGGTACCGTGGACAGGAATG
rJMSF040F08+ TACCTATTTACNTCNCCCCGGCCCCGAAGAAAAACTTCCCTGGTACCGNGGACAGGAATG
____________________________________________________________
consensus TACCTATTTACATCCCCCCGGCCCCGAAGAAAAACTTCCCTGGTACCGTGGACAGGAATG
. : . : . : . : . : . :
rJMSF002L15+ GAGTTATNTTCGGGGNGGGCTTACTACTNTTGATCGGGACTATGGATGGATTAACAACAT
rJMFF040K11+ GAGTTATNTTCGGGGTGGGCTTACTACTNTTGATCGGGACTATGGATGGATTAACAACAT
rJMSF040F08+ GAGTTNTNTTCGGGGNGGGCTTACTACTCTTGATCGGGACTATGGATGGATTAACAACNT
____________________________________________________________
consensus GAGTTATNTTCGGGGTGGGCTTACTACTCTTGATCGGGACTATGGATGGATTAACAACAT
. : . : . : . : . : . :
rJMSF002L15+ CCATCNCGACATCGGGACTCATGNGATACATCNCCTCTTCCCTCAAATACCCCNTTATCN
rJMFF040K11+ CCATCACGACATCGGGACTCATGTGATACATCNCCTNTTCCCTCAAATACCCCATTATCA
rJMSF040F08+ CCATCCCGACATCGGGACTCATGTGATACATCNCCTCTTCCCTCAAATACCCCNTTATCA
____________________________________________________________
consensus CCATCCCGACATCGGGACTCATGTGATACATCNCCTCTTCCCTCAAATACCCCATTATCA
. : . : . : . : . : . :
rJMSF002L15+ TTTAACNGAAGCTACTGAAGCAGNGAAGCCTGTGCTTGGAAAGTNTTNCNGGGAGCCAAA
rJMFF040K11+ TTTAACAGAAGCTACTGAAGCAGCGAAGCCTGTGCTTGGAAAGTATTACAGGGAGCCGAA
rJMSF040F08+ TTTAACNGAAGCTACTGAAGCAGCGAAGCCTGTGCTTGGAAAGTNTTNCNGGGNGCCAAA
____________________________________________________________
consensus TTTAACAGAAGCTACTGAAGCAGCGAAGCCTGTGCTTGGAAAGTATTACAGGGAGCCAAA
. : . : . : . : . : . :
rJMSF002L15+ GAAATCGAGCCCTCTCCCGTTTCATNTGCTGGGNGACCTCATAAGAAGCNTGAAGNCCGA
rJMFF040K11+ GAAATCGAGCCCTNTCCCGTTTCATNTGCTGGGAGACCTCATAAGAAGCATGAAGACCGA
rJMSF040F08+ GAAATCGAGCCCTCTCCCGTTTCATNTGCTGGGNGNCCTCATAAGAAGCNTGAAGNCCGN
____________________________________________________________
consensus GAAATCGAGCCCTCTCCCGTTTCATNTGCTGGGAGACCTCATAAGAAGCATGAAGACCGA
. : . : . : . : . : . :
rJMSF002L15+ CCCCTATGTAAGNGATACTGGGGACGTCGTATATTATCAATNTGATCCTGAGCNGTNTGG
rJMFF040K11+ CCNCTATGTAAGTGATACTGGGGACGTCGTATATTATCAATNTGATCCTGAGCTGTNTGG
rJMSF040F08+ CCCCTATGTAAGNGATACNGGGGACGTCGTATATTATCAATCTGATCCTGAGCNGTCNGG
____________________________________________________________
consensus CCCCTATGTAAGTGATACTGGGGACGTCGTATATTATCAATCTGATCCTGAGCTGTCTGG
. : . : . : . : . : . :
rJMSF002L15+ ATNTNTGAAGAAAAATTGAACTTTCTGTCAAAGANGGGGTCGCGGGTAAATTTTTAATTT
rJMFF040K11+ ATNTNTGAAGAAAAATTGAACTTTNTGTCAAAGATGGGGTCGCGGGTAAATTTTTAA-TT
rJMSF040F08+ ATCTCTGAAGAAAAATTGAACTTTCNGTCAAAGANGGGGTCGCGGGTAAATTTTTAATTT
____________________________________________________________
consensus ATCTCTGAAGAAAAATTGAACTTTCTGTCAAAGATGGGGTCGCGGGTAAATTTTTAATTT
. : . : . : . : . : . :
rJMSF002L15+ TTTTTTTTTAGTTAATTTTTACCGCTATTGAGGGAAATACCTCAGCTAGATTAAATTCAT
rJMFF040K11+ TTTTTTTTTAGTTAATTTTTACCGCTATTGAGGGAAATACCTCAGCTAGATTAAATTCAT
rJMSF040F08+ TTTTTTTTTAGTTAATTTTTACCGCTATTGAGGGAAATACCTCAGCTAGATTAAATTCAT
____________________________________________________________
consensus TTTTTTTTTAGTTAATTTTTACCGCTATTGAGGGAAATACCTCAGCTAGATTAAATTCAT
. : . : . : . : . : . :
rJMSF002L15+ TTTTCCCATCCAGAATGTGAAGGGATATAGGTTCAGTATTGATAAACAATATATAGTGAT
rJMFF040K11+ TTTTCCCATCCAGAATGTGAAGGGATATAGGTTCAGTATTGATAAACAATATATAGTGAT
rJMSF040F08+ TTTTCCCATCCAGAATGTGAAGGGATATAGGTTCAGTATTGATAAACAATATATAGTGAT
____________________________________________________________
consensus TTTTCCCATCCAGAATGTGAAGGGATATAGGTTCAGTATTGATAAACAATATATAGTGAT
. : . : . : . : . : . :
rJMSF002L15+ TGCTAAATTTAGCTGTTAT
rJMFF040K11+ TGCTAAATTTAGCTGTTATTTTTGTTGTTTTATAAGTATTCGGTGATC
rJMSF040F08+ TGCTAAATTTAGCTGTTATTTTTGTTGTTTTATAAGTATTTGGTGATCTGGTGATTCTTG
____________________________________________________________
consensus TGCTAAATTTAGCTGTTATTTTTGTTGTTTTATAAGTATTTGGTGATCTGGTGATTCTTG
. : . : . : . : . : . :
rJMSF040F08+ AATGATACCTATGAAAAGCTCTGCCACTATTTTATGATGGGAGATTGCCCACAAAATGAC
____________________________________________________________
consensus AATGATACCTATGAAAAGCTCTGCCACTATTTTATGATGGGAGATTGCCCACAAAATGAC