Contig 008611:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026A16Sequence612006546 (2)ref|XP_009592548.1|5e-25PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Nicotiana tomentosiform750008611 (2)ref|XP_010313102.1|4e-132PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Solanum lycopersi
JMSF040C19Sequence719006546 (2)ref|XP_009592548.1|7e-26PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Nicotiana tomentosiform824008611 (2)ref|XP_004250766.1|5e-145PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X1 [Solanum lycopersi

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF040C19+ TGGTCGATTCATGTTTCTAGTTAAAGAGGGTCACTTGCATTTAA
                      ____________________________________________________________
consensus TGGTCGATTCATGTTTCTAGTTAAAGAGGGTCACTTGCATTTAA
 
. : . : . : . : . : . :
rJMSF026A16+ TGCTGTGTTGGATGAGGTAGACATACTTTGTAAGGATGAAGATTTTG
rJMSF040C19+ CAAACCTTAATTGTGCTGTGTTGGATGAGGTAGACATACTTTGTAAGGATGAAGATTTTG
                      ____________________________________________________________
consensus CAAACCTTAATTGTGCTGTGTTGGATGAGGTAGACATACTTTGTAAGGATGAAGATTTTG
 
. : . : . : . : . : . :
rJMSF026A16+ AGACTGCACTACAATGTCTTGTTAACTCTTCACCTGTCACTGCACAATTTCTATTTGTGA
rJMSF040C19+ AGACTGCACTACAATGTCTTGTTAACTCTTCACCTGTCACTGCACAATTTCTATTTGTGA
                      ____________________________________________________________
consensus AGACTGCACTACAATGTCTTGTTAACTCTTCACCTGTCACTGCACAATTTCTATTTGTGA
 
. : . : . : . : . : . :
rJMSF026A16+ CTGCAACTTTACCAGTTGATATATACAACAAGTTGGTTGAAAACTTCCCTGACTGTGAGC
rJMSF040C19+ CTGCAACTTTACCAGTTGATATATACAACAAGTTGGTTGAAAACTTCCCTGACTGTGAGC
                      ____________________________________________________________
consensus CTGCAACTTTACCAGTTGATATATACAACAAGTTGGTTGAAAACTTCCCTGACTGTGAGC
 
. : . : . : . : . : . :
rJMSF026A16+ TTATAACTGGTCCTGGTATGCATCGCACAAGCACTGGCTTAGAGGAGGTCCTTGTAGATT
rJMSF040C19+ TTATAACTGGTCCTGGTATGCATCGCACAAGCACTGGCTTAGAGGAGGTCCTTGTAGATT
                      ____________________________________________________________
consensus TTATAACTGGTCCTGGTATGCATCGCACAAGCACTGGCTTAGAGGAGGTCCTTGTAGATT
 
. : . : . : . : . : . :
rJMSF026A16+ GTAGTGGAGAAGAAGGATCAGAAAAAACCCCAGATACAGCATTCCTCAACAAGAAAAATG
rJMSF040C19+ GTAGTGGAGAAGAAGGATCAGAAAAAACCCCAGATACAGCATTCCTCAACAAGAAAAATG
                      ____________________________________________________________
consensus GTAGTGGAGAAGAAGGATCAGAAAAAACCCCAGATACAGCATTCCTCAACAAGAAAAATG
 
. : . : . : . : . : . :
rJMSF026A16+ CACTTTTGCAGTTGATGGAGGAACGCCCTGTCCCCAAGACAATTGTTTTCTGTAACAAGA
rJMSF040C19+ CACTTTTGCAGTTGATGGAGGAACGCCCTGTCCCCAAGACAATTGTTTTCTGTAACAAGA
                      ____________________________________________________________
consensus CACTTTTGCAGTTGATGGAGGAACGCCCTGTCCCCAAGACAATTGTTTTCTGTAACAAGA
 
. : . : . : . : . : . :
rJMSF026A16+ TTGAGAGCTGCAGAAAAGTTGAAAATGCATTAAAGCGCTTTGACAGGAAAGGAATCTATG
rJMSF040C19+ TTGAGAGCTGCAGAAAAGTTGAAAATGCATTAAAGCGCTTTGACAGGAAAGGAATCTATG
                      ____________________________________________________________
consensus TTGAGAGCTGCAGAAAAGTTGAAAATGCATTAAAGCGCTTTGACAGGAAAGGAATCTATG
 
. : . : . : . : . : . :
rJMSF026A16+ TTAGAGTATTACCATTTCATTCCGCTTTGGATCAAGAAATGAGGCTTGCTAGTATGAAAG
rJMSF040C19+ TTAGAGTATTACCATTTCATTCCGCTTTGGATCAAGAAATGAGGCTTGCTAGTATGAAAG
                      ____________________________________________________________
consensus TTAGAGTATTACCATTTCATTCCGCTTTGGATCAAGAAATGAGGCTTGCTAGTATGAAAG
 
. : . : . : . : . : . :
rJMSF026A16+ AGTTCCGCAGCCCTCAGCCGAAGAACGTGTCTATGTTCTTGGTTTGCACCGACAGAGCAT
rJMSF040C19+ AGTTCCGCAGCCCTCAGCCGAAGAACGTGTCTATGTTCTTGGTTTGCACCGACAGAGCAT
                      ____________________________________________________________
consensus AGTTCCGCAGCCCTCAGCCGAAGAACGTGTCTATGTTCTTGGTTTGCACCGACAGAGCAT
 
. : . : . : . : . : . :
rJMSF026A16+ CTAGAGGTATAGACTTCACGGGAGTGGACCATGTAGTGCTGTTTGATTTTCCTCGTGATC
rJMSF040C19+ CTAGAGGTATAGACTTCACGGGAGTGGACCATGTAGTGCTGTTTGATTTTCCTCGTGATC
                      ____________________________________________________________
consensus CTAGAGGTATAGACTTCACGGGAGTGGACCATGTAGTGCTGTTTGATTTTCCTCGTGATC
 
. : . : . : . : . : . :
rJMSF026A16+ CAAGCGAATATGTGCGCCGTGTTGGGAGAACAGCCAGAGGGGCTGGAGGAAAAGGAAAAG
rJMSF040C19+ CAAGCGAATATGTGCGCCGTGTTGGGAGAACAGCCAGAGGGGCTGGAGGAAAAGGAAAAG
                      ____________________________________________________________
consensus CAAGCGAATATGTGCGCCGTGTTGGGAGAACAGCCAGAGGGGCTGGAGGAAAAGGAAAAG
 
. : . : . : . : . : . :
rJMSF026A16+ CGTTCATATTTGTGGTAGGTAAGCAAGTTTCTCTTGCTCAGAGGATAATCGAAAGGAACA
rJMSF040C19+ CGTTCATATTTGTGGTAGGTAAGCAAGTTTCTCTTGCTCAGAGGATAATCGAAAGGAACA
                      ____________________________________________________________
consensus CGTTCATATTTGTGGTAGGTAAGCAAGTTTCTCTTGCTCAGAGGATAATCGAAAGGAACA
 
. : . : . : . : . : . :
rJMSF026A16+ AGAAAGGTCACCCATTGCATGATGTACCATATACC
rJMSF040C19+ AGAAAGGTCACCCATTGCATGATGTACCATATACCCTAGGACCATGTACAAAGTGTCAAT
                      ____________________________________________________________
consensus AGAAAGGTCACCCATTGCATGATGTACCATATACCCTAGGACCATGTACAAAGTGTCAAT