clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN019M23 | Sequence | 642 | 008609 (8) | ref|XP_009613032.1| | 172 | PREDICTED: uncharacterized protein LOC104106240 [Nicotiana tomentosiformis] ref| | |||||
JMFN033F16 | Sequence | 647 | 008609 (8) | ref|XP_009613032.1| | 206 | PREDICTED: uncharacterized protein LOC104106240 [Nicotiana tomentosiformis] ref| | |||||
JMSF029G17 | Sequence | 660 | 008609 (8) | ref|XP_009613032.1| | 185 | PREDICTED: uncharacterized protein LOC104106240 [Nicotiana tomentosiformis] ref| | 709 | 008609 (8) | ref|XP_009613032.1| | 185 | PREDICTED: uncharacterized protein LOC104106240 [Nicotiana tomentosiformis] ref| |
JMSF040A04 | Sequence | 670 | 008609 (8) | ref|XP_009613032.1| | 178 | PREDICTED: uncharacterized protein LOC104106240 [Nicotiana tomentosiformis] ref| | 771 | 008609 (8) | ref|XP_009613032.1| | 206 | PREDICTED: uncharacterized protein LOC104106240 [Nicotiana tomentosiformis] ref| |
JMSF046K18 | Sequence | 717 | 008609 (8) | ref|XP_009613032.1| | 206 | PREDICTED: uncharacterized protein LOC104106240 [Nicotiana tomentosiformis] ref| | 674 | 008609 (8) | ref|XP_009613032.1| | 206 | PREDICTED: uncharacterized protein LOC104106240 [Nicotiana tomentosiformis] ref| |
This contig is upended
. : . : . : . : . : . :
rJMSF046K18- ATTTGAATATG
JMSF046K18+ TTTTTTTTTTGTGATGAGAAATTTTCAACTTTAAAGTTTCACTTTGAATTTGAATATG
____________________________________________________________
consensus TTTTTTTTTTGTGATGAGAAATTTTCAACTTTAAAGTTTCACTTTGAATTTGAATATG
. : . : . : . : . : . :
rJMSF046K18- AATGCATTTATAGAGAAGTGGAAGCAGACAGAAATAGAGATTATGATAATGAAGGATATA
JMSF046K18+ AATGCATTTATAGAGAAGTGGAAGCAGACAGAAATAGAGATTATGATAATGAAGGATATA
JMFN033F16+ AGCAGACAGAAATAGAGATTATGATAATGAAGGATATA
rJMSF029G17- AGCAGACAGAAATAGAGATTATGATAATGAAGGATATA
____________________________________________________________
consensus AATGCATTTATAGAGAAGTGGAAGCAGACAGAAATAGAGATTATGATAATGAAGGATATA
. : . : . : . : . : . :
rJMSF046K18- TGTTATCCACACAATATATATGATGAGAAGGGAAAACCAATTTTGGTGTTCCTTTAGTGC
JMSF046K18+ TGTTATCCACACAATATATATGATGAGAAGGGAAAACCAATTTTGGTGTTCCTTTAGTGC
JMFN033F16+ TGTTATCCACACAATATATATGATGAGAAGGGAAAACCAATTTTGGTGTTCCTTTAGTGC
rJMSF029G17- TGTTATCCACACAATATATATGATGAGAAGGGAAAACCAATTTTGGTGTTCCTTTAGTGC
rJMSF040A04- CACAATATATATGATGAGAAGGGAAAACCAATTTTGGTGTTCCTTTAGTGC
____________________________________________________________
consensus TGTTATCCACACAATATATATGATGAGAAGGGAAAACCAATTTTGGTGTTCCTTTAGTGC
. : . : . : . : . : . :
rJMSF046K18- TTATTTCCACATAATGCAGCATTTTTCTTGGAGGGTCTGAAAGTCAAAGCACTGAGGCTG
JMSF046K18+ TTATTTCCACATAATGCAGCATTTTTCTTGGAGGGTCTGAAAGTCAAAGCACTGAGGCTG
JMFN033F16+ TTATTTCCACATAATGCAGCATTTTTCTTGGAGGGTCTGAAAGTCAAAGCACTGAGGCTG
rJMSF029G17- TTATTTCCACATAATGCAGCATTTTTCTTGGAGGGTCTG-AAGTCAAAGCACTGAGGCTG
JMSF040A04+ ACTGAGGCTG
JMSF029G17+ ACATAATGCAGCATTTTTCTTGGAGGGTCTG-AAGTCAAAGCACTGAGGCTG
rJMSF040A04- TTATTTCCACATAATGCAGCATTTTTCTTGGAGGGTCTGAAAGTCAAAGCACTGAGGCTG
____________________________________________________________
consensus TTATTTCCACATAATGCAGCATTTTTCTTGGAGGGTCTGAAAGTCAAAGCACTGAGGCTG
. : . : . : . : . : . :
rJMSF046K18- TAGATGCAGGTGTTGGCACTTCTGGATTTGACTGTGACTTCCTGAGTTGTGGTTATTGAG
JMSF046K18+ TAGATGCAGGTGTTGGCACTTCTGGATTTGACTGTGACTTCCTGAGTTGTGGTTATTGAG
JMFN033F16+ TAGATGCAGGTGTTGGCACTTCTGGATTTGACTGTGACTTCCTGAGTTGTGGTTATTGAG
rJMSF029G17- TAGATGCAGGTGTTGGCACTTCTGGATTTGACTGTGACTTCCTGAGTTGTGGTTATTGAG
JMFN019M23+ GATGCAGGTGTTGGCACTTCTGGATTTGACTGTGACTTCCTGAGTTGTGGTTATTGAG
JMSF040A04+ TAGATGCAGGTGTTGGCACTTCTGGATTTGACTGTGACTTCCTGAGTTGTGGTTATTGAG
JMSF029G17+ TAGATGCAGGTGTTGGCACTTCTGGATTTGACTGTGACTTCCTGAGTTGTGGTTATTGAG
rJMSF040A04- TAGATGCAGGTGTTGGCACTTCTGGATTTGACTGTGACTTCCTGAGTTGTGGTTATTGAG
____________________________________________________________
consensus TAGATGCAGGTGTTGGCACTTCTGGATTTGACTGTGACTTCCTGAGTTGTGGTTATTGAG
. : . : . : . : . : . :
rJMSF046K18- GCAGGAACACTGCAGGCTGAGGATGAGGAGTGCAGCAGGCTTGCCCGGCATGAATTCCCG
JMSF046K18+ GCAGGAACACTGCAGGCTGAGGATGAGGAGTGCAGCAGGCTTGCCCGGCATGAATTCCCG
JMFN033F16+ GCAGGAACACTGCAGGCTGAGGATGAGGAGTGCAGCAGGCTTGCCCGGCATGAATTCCCG
rJMSF029G17- GCAGGAACACTGCAGGCTGAGGATGAGGAGTGCAGCAGGCTTGCCCGGCATGAATTCCCG
JMFN019M23+ GCAGGAACACTGCAGGCTGAGGATGAGGAGTGCAGCAGGCTTGCCCGGCATGAATTCCCG
JMSF040A04+ GCAGGAACACTGCAGGCTGAGGATGAGGAGTGCAGCAGGCTTGCCCGGCATGAATTCCCG
JMSF029G17+ GCAGGAACACTGCAGGCTGAGGATGAGGAGTGCAGCAGGCTTGCCCGGCATGAATTCCCG
rJMSF040A04- GCAGGAACACTGCAGGCTGAGGATGAGGAGTGCAGCAGGCTTGCCCGGCATGAATTCCCG
____________________________________________________________
consensus GCAGGAACACTGCAGGCTGAGGATGAGGAGTGCAGCAGGCTTGCCCGGCATGAATTCCCG
. : . : . : . : . : . :
rJMSF046K18- ATTTCGTTCTCTCTGGCGCACTCGATCCCATCCACTGAAGGTATCACCAACCTGTAAATA
JMSF046K18+ ATTTCGTTCTCTCTGGCGCACTCGATCCCATCCACTGAAGGTATCACCAACCTGTAAATA
JMFN033F16+ ATTTCGTTCTCTCTGGCGCACTCGATCCCATCCACTGAAGGTATCACCAACCTGTAAATA
rJMSF029G17- ATTTCGTTCTCTCTGGCGCACTCGATCCCATCCACTGAAGGTATCACCAACCTGTAAATA
JMFN019M23+ ATTTCGTTCTCTCTGGCGCACTCGATCCCATCCACTGAAGGTATCACCAACCTGTAAATA
JMSF040A04+ ATTTCGTTCTCTCTGGCGCACTCGATCCCATCCACTGAAGGTATCACCAACCTGTAAATA
JMSF029G17+ ATTTCGTTCTCTCTGGCGCACTCGATCCCATCCACTGAAGGTATCACCAACCTGTAAATA
rJMSF040A04- ATTTCGTTCTCTCTGGCGCACTCGATCCCATCCACTGAAGGTATCACCAACCTGTAAATA
____________________________________________________________
consensus ATTTCGTTCTCTCTGGCGCACTCGATCCCATCCACTGAAGGTATCACCAACCTGTAAATA
. : . : . : . : . : . :
rJMSF046K18- CCAAACCTGTTTGTAGTCCTGTTCACTGAGAATTCTATTTGCTCTGCTGTTTTTGGTGAA
JMSF046K18+ CCAAACCTGTTTGTAGTCCTGTTCACTGAGAATTCTATTTGCTCTGCTGTTTTTGGTGAA
JMFN033F16+ CCAAACCTGTTTGTAGTCCTGTTCACTGAGAATTCTATTTGCTCTGCTGTTTTTGGTGAA
rJMSF029G17- CCAAACCTGTTTGTAGTCCTGTTCACTGAGAATTCTATTTGCTCTGCTGTTTTTGGTGAA
JMFN019M23+ CCAAACCTGTTTGTAGTCCTGTTCACTGAGAATTCTATTTGCTCTGCTGTTTTTGGTGAA
JMSF040A04+ CCAAACCTGTTTGTAGTCCTGTTCACTGAGAATTCTATTTGCTCTGCTGTTTTTGGTGAA
JMSF029G17+ CCAAACCTGTTTGTAGTCCTGTTCACTGAGAATTCTATTTGCTCTGCTGTTTTTGGTGAA
rJMSF040A04- CCAAACCTGTTTGTAGTCCTGTTCACTGAGAATTCTATTTGCTCTGCTGTTTTTGGTGAA
____________________________________________________________
consensus CCAAACCTGTTTGTAGTCCTGTTCACTGAGAATTCTATTTGCTCTGCTGTTTTTGGTGAA
. : . : . : . : . : . :
rJMSF046K18- CTTGCTTTGAATGTGCAGTCGATTTTCACTTCCACACCTGGCATGAAGTAGCTGTGCCTG
JMSF046K18+ CTTGCTTTGAATGTGCAGTCGATTTTCACTTCCACACCTGGCATGAAGTAGCTGTGCCTG
JMFN033F16+ CTTGCTTTGAATGTGCAGTCGATTTTCACTTCCACACCTGGCATGAAGTAGCTGTGCCTG
rJMSF029G17- CTTGCTTTGAATGTGCAGTCGATTTTCACTTCCACACCTGGCATGAAGTAGCTGTGCCTG
JMFN019M23+ CTTGCTTTGAATGTGCAGTCGATTTTCACTTCCACACCTGGCATGAAGTAGCTGTGCCTG
JMSF040A04+ CTTGCTTTGAATGTGCAGTCGATTTTCACTTCCACACCTGGCATGAAGTAGCTGTGCCTG
JMSF029G17+ CTTGCTTTGAATGTGCAGTCGATTTTCACTTCCACACCTGGCATGAAGTAGCTGTGCCTG
rJMSF040A04- CTTGCTTTGAATGTGCAGTCGATTTTCACTTCCACACCTGGCATGAAGTAGCTGTGCCTG
____________________________________________________________
consensus CTTGCTTTGAATGTGCAGTCGATTTTCACTTCCACACCTGGCATGAAGTAGCTGTGCCTG
. : . : . : . : . : . :
rJMSF046K18- GAGAAGGAATTATTGGAGCAGATGTCACAGTAAACCATTCCCATGACAGTGATCTGGGGA
JMSF046K18+ GAGAAGGAATTATTGGAGCAGATGTCACAGTAAACCATTCCCATGACAGTGATCTGGGGA
JMFN033F16+ GAGAAGGAATTATTGGAGCAGATGTCACAGTAAACCATTCCCATGACAGTGATCTGGGGA
rJMSF029G17- GAGAAGGAATTATTGGAGCAGATGTCACAGTAAACCATTCCCATGACAGTGATCTGGGGA
JMFN019M23+ GAGAAGGAATTATTGGAGCAGATGTCACAGTAAACCATTCCCATGACAGTGATCTGGGGA
JMSF040A04+ GAGAAGGAATTATTGGAGCAGATGTCACAGTAAACCATTCCCATGACAGTGATCTGGGGA
JMSF029G17+ GAGAAGGAATTATTGGAGCAGATGTCACAGTAAACCATTCCCATGACAGTGATCTGGGGA
rJMSF040A04- GAGAAGGAATTATTGGAGCAGATGTCACAGTAAACCATTCCCATGACAGTGATCTGGGGA
____________________________________________________________
consensus GAGAAGGAATTATTGGAGCAGATGTCACAGTAAACCATTCCCATGACAGTGATCTGGGGA
. : . : . : . : . : . :
rJMSF046K18- TCAGGGATATGGGCTAGTCTTGGACCTCTTGGTGGTGGTGCCACAACATGAAGAGGGAGT
JMSF046K18+ TCAGGGATATGGGCTAGTCTTGGACCTCTTGGTGGTGGTGCCACAACATGAAGAGGGAGT
JMFN033F16+ TCAGGGATATGGGCTAGTCTTGGACCTCTTGGTGGTGGTGCCACAACATGAAGAGGGAGT
rJMSF029G17- TCAGGGATATGGGCTAGTCTTGGACCTCTTGGTGGTGGTGCCACAACATGAAGAGGGAGT
JMFN019M23+ TCAGGGATATGGGCTAGTCTTGGACCTCTTGGTGGTGGTGCCACAACATGAAGAGGGAGT
JMSF040A04+ TCAGGGATATGGGCTAGTCTTGGACCTCTTGGTGGTGGTGCCACAACATGAAGAGGGAGT
JMSF029G17+ TCAGGGATATGGGCTAGTCTTGGACCTCTTGGTGGTGGTGCCACAACATGAAGAGGGAGT
rJMSF040A04- TCAGGGATATGGGCTAGTCTTGGACCTCTTGGTGGTGGTGCCACAACATGAAGAGGGAGT
____________________________________________________________
consensus TCAGGGATATGGGCTAGTCTTGGACCTCTTGGTGGTGGTGCCACAACATGAAGAGGGAGT
. : . : . : . : . : . :
rJMSF046K18- GAGGACAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAAAAAAACAAGAAAACAG
JMSF046K18+ GAGGACAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAAAAAAACAAGAAAACAG
JMFN033F16+ GAGGACAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAAAAAAACAAGAAAACAGGA
rJMSF029G17- GAGGACAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAAAAAAACAAGAAAACAGGA
JMFN019M23+ GAGGACAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAAAAAAACAAGAAAACAGGA
JMSF040A04+ GAGGACAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAAAAAAACAAGAAAACAGGA
JMSF029G17+ GAGGACAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAAAAAAACAAGAAAACAGGA
rJMSF040A04- GAGGACAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAAAAAAACAAGAAAACAGGA
____________________________________________________________
consensus GAGGACAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAAAAAAACAAGAAAACAGGA
. : . : . : . : . : . :
JMFN033F16+ GGAGGTGAA
rJMSF029G17- GGAGGTGAAGTCATTGCAGAAAAACTCCAAGAAGAGTGAGTTTGAGTTTGAGTTTTGGTT
JMFN019M23+ GGAGGTGAAGTCATTGCAGAAAAACTCCAAGAAGAGTGAGTTTGAGTTTGAGTTTTGGTT
JMSF040A04+ GGAGGTGAAGTCATTGCAGAAAAACTCCAAGAAGAGTGAGTTTGAGTTTGAGTTTTGGTT
JMSF029G17+ GGAGGTGAAGTCATTGCAGAAAAACTCCAAGAAGAGTGAGTTTGAGTTTGAGTTTTGGTT
rJMSF040A04- GGAGGTGAAGTCATTGCAGAAAAACTCCAAGAAGAGTGAGTTTGAGTTTGAGTTTTGGTT
____________________________________________________________
consensus GGAGGTGAAGTCATTGCAGAAAAACTCCAAGAAGAGTGAGTTTGAGTTTGAGTTTTGGTT
. : . : . : . : . : . :
rJMSF029G17- TGAGGCTAGG
JMFN019M23+ TGAGGCTAGGAAAGGATGGAGTGGGTAAGATTGTAGTGTGGCTGAGAAGCAAGGCAAAGT
JMSF040A04+ TGAGGCTAGGAAAGGATGGAGTGGGTAAGATTGTAGTGTGGCTGAGAAGCAAGGCAAAGT
JMSF029G17+ TGAGGCTAGGAAAGGATGGAGTGGGTAAGATTGTAGTGTGGCTGAGAAGCAAGGCAAAGT
rJMSF040A04- TGAGGCTAGGAAAGGATGGAGTGGGTAAGATTGTAGTGTGGCTGANAAGCAAGGCAAAGT
____________________________________________________________
consensus TGAGGCTAGGAAAGGATGGAGTGGGTAAGATTGTAGTGTGGCTGAGAAGCAAGGCAAAGT
. : . : . : . : . : . :
JMFN019M23+ GTGAGTATAGGGATAATGGTGAAAGAATGCCAACTGGGTAAAAG
JMSF040A04+ GTGAGTATAGGGATAATGGTGAAAGAATGCCAACTGGGTAAAAGTGAGGCACCTGCACTC
JMSF029G17+ GTGAGTAT
rJMSF040A04- GTGAGTATAGGGATAATGGTGAAAGAATGCCAACTGGGTAAAAGTGAGGCACCTGCACTC
____________________________________________________________
consensus GTGAGTATAGGGATAATGGTGAAAGAATGCCAACTGGGTAAAAGTGAGGCACCTGCACTC