| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF030J01 | Sequence | 485 | 007409 (4) | ref|XP_004234514.1| | 2e-36 | PREDICTED: ubiquitin domain-containing protein DSK2b-like [Solanum lycopersicum | 681 | 008607 (3) | ref|XP_004234514.1| | 2e-62 | PREDICTED: ubiquitin domain-containing protein DSK2b-like [Solanum lycopersicum |
| JMFF038C05 | Sequence | 504 | 007409 (4) | ref|XP_004234514.1| | 2e-33 | PREDICTED: ubiquitin domain-containing protein DSK2b-like [Solanum lycopersicum | 764 | 008607 (3) | ref|XP_004234514.1| | 4e-78 | PREDICTED: ubiquitin domain-containing protein DSK2b-like [Solanum lycopersicum |
| JMSF039I05 | Sequence | 714 | 007409 (4) | ref|XP_004234514.1| | 3e-44 | PREDICTED: ubiquitin domain-containing protein DSK2b-like [Solanum lycopersicum | 783 | 008607 (3) | ref|XP_002521706.1| | 3e-35 | plant ubiquilin, putative [Ricinus communis] gb|EEF40693.1| plant ubiquilin, put |
This contig is upended
. : . : . : . : . : . :
rJMSF039I05+ ATT
____________________________________________________________
consensus ATT
. : . : . : . : . : . :
rJMSF039I05+ TGCGCACCGCTTTTGCAACATAAACATNCAAAGATTCCATGTATAAGTTAAGGGCATAAT
____________________________________________________________
consensus TGCGCACCGCTTTTGCAACATAAACATNCAAAGATTCCATGTATAAGTTAAGGGCATAAT
. : . : . : . : . : . :
rJMSF039I05+ ATAAAGGACAAATTTATGGGTTTGATAGACAATCTTTGTATTAGAACTTATGCTCATAGT
____________________________________________________________
consensus ATAAAGGACAAATTTATGGGTTTGATAGACAATCTTTGTATTAGAACTTATGCTCATAGT
. : . : . : . : . : . :
rJMSF039I05+ TTTTTTTTTGTTTTTTATTTTTATTTTTTAAGGTGTGTTACTGGTTTTGTATTCTCTTCT
____________________________________________________________
consensus TTTTTTTTTGTTTTTTATTTTTATTTTTTAAGGTGTGTTACTGGTTTTGTATTCTCTTCT
. : . : . : . : . : . :
rJMFF030J01+ GCAACTCATGA
rJMFF038C05+ GCAACTCATGA
rJMSF039I05+ TGTCTTTGTTTCTCATTTTTTCCCTAATTCACTTCCTGTGTACCTTTCAGCAACTCATGA
____________________________________________________________
consensus TGTCTTTGTTTCTCATTTTTTCCCTAATTCACTTCCTGTGTACCTTTCAGCAACTCATGA
. : . : . : . : . : . :
rJMFF030J01+ ATTTTCAGCAATCACTCAGTTCACAACTTGGTAGACAGCAGACTAATCGAGAACTAGGTC
rJMFF038C05+ ATTTTCAGCAATCACTCAGTTCACAACTTGGTAGACAGCAGACTAATCGAGAACTAGGTC
rJMSF039I05+ ATTTTCAGCAATCACTCAGTTCACAACTTGGTAGACAGCAGACTAATCGAGAACTAGGTC
____________________________________________________________
consensus ATTTTCAGCAATCACTCAGTTCACAACTTGGTAGACAGCAGACTAATCGAGAACTAGGTC
. : . : . : . : . : . :
rJMFF030J01+ AAAATGGTGGAGCAGCAGGGTCGCTTGACAATATAGGATTAGAAATGCTGATGAATATGT
rJMFF038C05+ AAAATGGTGGAGCAGCAGGGTCGCTTGACAATATAGGATTAGAAATGCTGATGAATATGT
rJMSF039I05+ AAAATGGTGGAGCAGCAGGGTCGCTTGACAATATAGGATTAGAAATGCTGATGAATATGT
____________________________________________________________
consensus AAAATGGTGGAGCAGCAGGGTCGCTTGACAATATAGGATTAGAAATGCTGATGAATATGT
. : . : . : . : . : . :
rJMFF030J01+ TTGGTGGACTTGGAACCGGGGGTTTTGGAGTTCCCAACCAACCCAATGTGCCACCTGAGG
rJMFF038C05+ TTGGTGGACTTGGAACCGGGGGTTTTGGAGTTCCCAACCAACCCAATGTGCCACCTGAGG
rJMSF039I05+ TTGGTGGACTTGGAACCGGGGGTTTTGGAGTTCCCAACCAACCCAATGTGCCACCTGAGG
____________________________________________________________
consensus TTGGTGGACTTGGAACCGGGGGTTTTGGAGTTCCCAACCAACCCAATGTGCCACCTGAGG
. : . : . : . : . : . :
rJMFF030J01+ AACTATACGCCACTCAGCTTACACAGCTTCAGGAAATGGGTTTCTTTGATACACAAGAAA
rJMFF038C05+ AACTATACGCCACTCAGCTTACACAGCTTCAGGAAATGGGTTTCTTTGATACACAAGAAA
rJMSF039I05+ AACTATACGCCACTCAGCTTACACAGCTTCAGGAAATGGGTTTCTTTGATACACAAGAAA
____________________________________________________________
consensus AACTATACGCCACTCAGCTTACACAGCTTCAGGAAATGGGTTTCTTTGATACACAAGAAA
. : . : . : . : . : . :
rJMFF030J01+ ACATAAGGGCACTGGTAGCCACTGCTGGGAATGTCCATGCTGCCGTGGAACGTCTTCTAG
rJMFF038C05+ ACATAAGGGCACTGGTAGCCACTGCTGGGAATGTCCATGCTGCCGTGGAACGTCTTCTAG
rJMSF039I05+ ACATAAGGGCACTGGTAGCCACTGCTGGGAATGTCCATGCTGCCGTGGAACGTCTTCTAG
____________________________________________________________
consensus ACATAAGGGCACTGGTAGCCACTGCTGGGAATGTCCATGCTGCCGTGGAACGTCTTCTAG
. : . : . : . : . : . :
rJMFF030J01+ GAAACCCCGGTCAGTAGAATTCTATTCGATGTTACTATATAGCTTCTGTTGGGGACAAGA
rJMFF038C05+ GAAACCCCGGTCAGTAGAATTCTATTCGATGTTACTATATAGCTTCTGTTGGGGACAAGA
rJMSF039I05+ GAAACCCCGGTCAGTAGAATTCTATTCGATGTTACTATATAGCTTCTGTTGGGGACAAGA
____________________________________________________________
consensus GAAACCCCGGTCAGTAGAATTCTATTCGATGTTACTATATAGCTTCTGTTGGGGACAAGA
. : . : . : . : . : . :
rJMFF030J01+ TGGAAACCGGCCAACTTGGACAAACCTGCATCAAATCTTTGTTTGGAAATAATTGGATTA
rJMFF038C05+ TGGAAACCGGCCAACTTGGACAAACCTGCATCAAATCTTTGTTTGGAAATAATTGGATTA
rJMSF039I05+ TGGAAACCGGCCAACTTGGACAAACCTGCATCAAATCTTTGTTTGGAAATAATTGGATTA
____________________________________________________________
consensus TGGAAACCGGCCAACTTGGACAAACCTGCATCAAATCTTTGTTTGGAAATAATTGGATTA
. : . : . : . : . : . :
rJMFF030J01+ GAGTGATTTTTAAAACTCTTTGGCCTGTCCCCATTCTCTATTTACATAGACCAAACAAAC
rJMFF038C05+ GAGTGATTTTTAAAACTCTTTGGCCTGTCCCCATTCTCTATTTACATAGACCAAACAAAC
rJMSF039I05+ GAGTGATTTTTAAAACTCTTTGGCCTGTCCCCATTCTCTATTTACATAGACCAAACAAAC
____________________________________________________________
consensus GAGTGATTTTTAAAACTCTTTGGCCTGTCCCCATTCTCTATTTACATAGACCAAACAAAC
. : . : . : . : . : . :
rJMFF030J01+ AGAAAAAAGAACAAATTCTGGAGTTCCTTGTACATACAATGTTAAGATTCGCCAGCT
rJMFF038C05+ AGAAAAAAGAACAAATTCTGGAGTTCCTTGTACATACAATGTTAAGATTCGCCAGCT
rJMSF039I05+ AGAAAAAAGAACAAATTCTGGAGTTCCTTGTACATACAATGTTAAGATTCGCCAGCTAAG
____________________________________________________________
consensus AGAAAAAAGAACAAATTCTGGAGTTCCTTGTACATACAATGTTAAGATTCGCCAGCTAAG