Contig 008606:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039M07Sequence668008606 (4)ref|XP_002315361.1|1e-74hypothetical protein POPTR_0010s26160g [Populus trichocarpa] ref|XP_009351365.1|
JMFN017I12Sequence627008606 (4)ref|XP_002315361.1|1e-75hypothetical protein POPTR_0010s26160g [Populus trichocarpa] ref|XP_009351365.1|
JMSF038O18Sequence650008606 (4)ref|XP_002315361.1|2e-75hypothetical protein POPTR_0010s26160g [Populus trichocarpa] ref|XP_009351365.1|795008606 (4)ref|XP_002315361.1|1e-74hypothetical protein POPTR_0010s26160g [Populus trichocarpa] ref|XP_009351365.1|

Alignment

This contig is upended


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rJMSF038O18-                                                       ACAGAACACAGGGNT
                      ____________________________________________________________
consensus                                                          ACAGAACACAGGGNT
 
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rJMFF039M07-                    ATCCATTATCCATCTTGATTGGAGGGGAAAACTACAGGATTTCATGTTTC
rJMSF038O18-          ATAGCCCAGAATCCATTATCCATCTTGATTGGAGGGGAAAACTACAGGATTTCATGTTTC
                      ____________________________________________________________
consensus             ATAGCCCAGAATCCATTATCCATCTTGATTGGAGGGGAAAACTACAGGATTTCATGTTTC
 
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rJMFF039M07-          ACAG-TTTGGTTTTAGTACACTGGGAAATGTCATTCAAGGGCACAGCGAGAATAAACAGG
rJMSF038O18-          ACAGNTTTGGTTTTAGTACACTGGGAAATGTCATTCAAGGGCACAGCGAGAATAAACAGG
                      ____________________________________________________________
consensus             ACAGNTTTGGTTTTAGTACACTGGGAAATGTCATTCAAGGGCACAGCGAGAATAAACAGG
 
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JMSF038O18+                     TTGACAGCCTTTCAANTACTACGTACTAGCAGACAACATTGTTATGTGCT
rJMFF039M07-          AATACACACTTTGACAGCCTTTCAACTACTACGTACTAGCAGACAACATTGTTATGTGCT
JMFN017I12+                     TTGACAGCCTTTCAACTACTACGTACTAGCAGACAACATTGTTATGTGCT
rJMSF038O18-          AATACACATTTTGACAGCCTTTCAACTACTACGTACTAGCAGACAACATTGTTATGTGCT
                      ____________________________________________________________
consensus             AATACACATTTTGACAGCCTTTCAACTACTACGTACTAGCAGACAACATTGTTATGTGCT
 
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JMSF038O18+           CGGGAAATCCTTGATGGGTTAGACAATGTCTGGCTGGCTATCTCAAATGCGTTTTGGAGG
rJMFF039M07-          CGGGAAATCCTTGATGGGTTAGACAATGTCTGGCTGGCTATCTCAAATGCGTTTTGGAGG
JMFN017I12+           CGGGAAATCCTTGATGGGTTAGACAATGTCTGGCTGGCTATCTCAAATGCGTTTTGGAGG
rJMSF038O18-          CGGGAAATCCTTGATGGGTTAGACAATGTCTGGCTGGCTATCTCAAATGCGTTTTGGAGG
                      ____________________________________________________________
consensus             CGGGAAATCCTTGATGGGTTAGACAATGTCTGGCTGGCTATCTCAAATGCGTTTTGGAGG
 
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JMSF038O18+           AACATATGGCACGCGCTCATCTTCACAGAGATTCTGCAGATCTTCGGGAAGTGCCTCTGA
rJMFF039M07-          AACATATGGCACGCGCTCATCTTCACAGAGATTCTGCAGATCTTCGGGAAGTGCCTCTGA
JMFN017I12+           AACATATGGCACGCGCTCATCTTCACAGAGATTCTGCAGATCTTCGGGAAGTGCCTCTGA
rJMSF038O18-          AACATATGGCACGCGCTCATCTTCACAGAGATTCTGCAGATCTTCGGGAAGTGCCTCTGA
                      ____________________________________________________________
consensus             AACATATGGCACGCGCTCATCTTCACAGAGATTCTGCAGATCTTCGGGAAGTGCCTCTGA
 
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JMSF038O18+           AACTGCAAGGGTGTAACAGCCAGGGACAAAACGTCCTATTCGAAGCCAGCGAGCAGCCCA
rJMFF039M07-          AACTGCAAGGGTGTAACAGCCAGGGACAAAACGTCCTATTCGAAGCCAGCGAGCAGCCCA
JMFN017I12+           AACTGCAAGGGTGTAACAGCCAGGGACAAAACGTCCTATTCGAAGCCAGCGAGCAGCCCA
rJMSF038O18-          AACTGCAAGGGTGTAACAGCCAGGGACAAAACGTCCTATTCGAAGCCAGCGAGCAGCCCA
                      ____________________________________________________________
consensus             AACTGCAAGGGTGTAACAGCCAGGGACAAAACGTCCTATTCGAAGCCAGCGAGCAGCCCA
 
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JMSF038O18+           GCTCCTACTTGGATCCATGACTGAGATAATCCCAGTGAAATTAGGCGTAGTGCAATCAAC
rJMFF039M07-          GCTCCTACTTGGATCCATGACTGAGATAATCCCAGTGAAATTAGGCGTAGTGCAATCAAC
JMFN017I12+           GCTCCTACTTGGATCCATGACTGAGATAATCCCAGTGAAATTAGGCGTAGTGCAATCAAC
rJMSF038O18-          GCTCCTACTTGGATCCATGACTGAGATAATCCCAGTGAAATTAGGCGTAGTGCAATCAAC
                      ____________________________________________________________
consensus             GCTCCTACTTGGATCCATGACTGAGATAATCCCAGTGAAATTAGGCGTAGTGCAATCAAC
 
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JMSF038O18+           AACACGCTCATTATCTTCGTCCATCTTAAAGAAGGGACAGTTCTCACATCCAGACTCTCT
rJMFF039M07-          AACACGCTCATTATCTTCGTCCATCTTAAAGAAGGGACAGTTCTCACATCCAGACTCTCT
JMFN017I12+           AACACGCTCATTATCTTCGTCCATCTTAAAGAAGGGACAGTTCTCACATCCAGACTCTCT
rJMSF038O18-          AACACGCTCATTATCTTCGTCCATCTTAAAGAAGGGACAGTTCTCACATCCAGACTCTCT
                      ____________________________________________________________
consensus             AACACGCTCATTATCTTCGTCCATCTTAAAGAAGGGACAGTTCTCACATCCAGACTCTCT
 
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JMSF038O18+           GAACTGGTCATAGGTTTTGACGAGCCGGCAGCGAAGGCAAGCCCTGAGTTCGTGGCCAAA
rJMFF039M07-          GAACTGGTCATAGGTTTTGACGAGCCGGCAGCGAAGGCAAGCCCTGAGTTCGTGGCCAAA
JMFN017I12+           GAACTGGTCATAGGTTTTGACGAGCCGGCAGCGAAGGCAAGCCCTGAGTTCGTGGCCAAA
rJMSF038O18-          GAACTGGTCATAGGTTTTGACGAGCCGGCAGCGAAGGCAAGCCCTGAGTTCGTGGCCAAA
                      ____________________________________________________________
consensus             GAACTGGTCATAGGTTTTGACGAGCCGGCAGCGAAGGCAAGCCCTGAGTTCGTGGCCAAA
 
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JMSF038O18+           GCTCGTCGGAATTTGTGCCGCCGGTTGGTTACTTCCCATTGCTTCTCCCTCAAATTTCTG
rJMFF039M07-          GCTCGTCGGAATTTGTGCCGCCGGTTGGTTACTTCCCATTGCTTCTCCCTAAAATTTCTG
JMFN017I12+           GCTCGTCGGAATTTGTGCCGCCGGTTGGTTACTTCCCATTGCTTCTCCCTCAAATTTCTG
rJMSF038O18-          GCTCGTCGGAATTTGTGCCGCCGGTTGGTTACTTCCCATTGCTTCTCCCTCAAATTTCTG
                      ____________________________________________________________
consensus             GCTCGTCGGAATTTGTGCCGCCGGTTGGTTACTTCCCATTGCTTCTCCCTCAAATTTCTG
 
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JMSF038O18+           ATAGTCTCTAGTGCCGCTTCTCCTTCTACTAGTTACTACGCCTCGCAATTCCGCAGCTCG
rJMFF039M07-          ATAGTCTCTAGTGCCGCTTCTCCTTCTACTAGTTACTACGCCTCGCAATTCCGCAGCTCG
JMFN017I12+           ATAGTCTCTAGTGCCGCTTCTCCTTCTACTAGTTACTACGCCTCGCAATTCCGCAGCTCG
rJMSF038O18-          ATAGTCTCTAGTGCCGCTTCTCCTTCTACTAGTTACTACGCCTCGCAATTCCGCAGCTCG
                      ____________________________________________________________
consensus             ATAGTCTCTAGTGCCGCTTCTCCTTCTACTAGTTACTACGCCTCGCAATTCCGCAGCTCG
 
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JMSF038O18+           TGAAAATTCCAACTGGTAGATCAACGAAAAAGACCATGCATACCTTGAAGAGATTCACAG
rJMFF039M07-          TGAAAATTCCAACTGGT                                           
JMFN017I12+           TGAAAATTCCAACTGGTAGATCAACGAAAAAGACCATGCATACCTTGAAGAGATTCACAG
rJMSF038O18-          TGAAAATTCCAACTGGTAGATCAACGAAAAAGACCATGCATACCTTGAAGAGATTCACAG
                      ____________________________________________________________
consensus             TGAAAATTCCAACTGGTAGATCAACGAAAAAGACCATGCATACCTTGAAGAGATTCACAG
 
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JMSF038O18+           AAATCCTCGCCGTCGGCTCCTCGATCTTCGTCGTTAGCCGCTAACTCCTCGACGTCGACC
JMFN017I12+           AAATCCTCGCCGTCGGCTCCTCGATCTTCGTCGTTA                        
rJMSF038O18-          AAATCCTCGCCGTCGGCTCCTCGATCTTCGTCGTTAGCCGCTAACTCCTCGACGTCGACC
                      ____________________________________________________________
consensus             AAATCCTCGCCGTCGGCTCCTCGATCTTCGTCGTTAGCCGCTAACTCCTCGACGTCGACC