| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006H03 | Sequence | 582 | 007297 (3) | ref|XP_011072417.1| | 7e-62 | PREDICTED: nuclear pore complex protein NUP35 [Sesamum indicum] | 778 | 008602 (3) | ref|XP_009801223.1| | 2e-84 | PREDICTED: nucleoporin NUP53 [Nicotiana sylvestris] |
| JMFF049F19 | Sequence | 558 | 007297 (3) | ref|XP_011072417.1| | 1e-60 | PREDICTED: nuclear pore complex protein NUP35 [Sesamum indicum] | 596 | 008602 (3) | ref|XP_009801223.1| | 2e-34 | PREDICTED: nucleoporin NUP53 [Nicotiana sylvestris] |
| JMSF038G18 | Sequence | 640 | 007297 (3) | ref|XP_011072417.1| | 2e-80 | PREDICTED: nuclear pore complex protein NUP35 [Sesamum indicum] | 928 | 008602 (3) | ref|XP_009801223.1| | 3e-72 | PREDICTED: nucleoporin NUP53 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF006H03+ AGGG
____________________________________________________________
consensus AGGG
. : . : . : . : . : . :
rJMFF006H03+ AAGTTGCAAGGCCAGAGATAAAGAAGAATTCAATACCCGTGGGTAACCTGGATGAGGAGG
rJMSF038G18+ ATACCCGNGGGTAACCTGGATGAGGAGG
____________________________________________________________
consensus AAGTTGCAAGGCCAGAGATAAAGAAGAATTCAATACCCGTGGGTAACCTGGATGAGGAGG
. : . : . : . : . : . :
rJMFF006H03+ AGTGGGTCACTGTATATGGGTTTTCTCCAGCTGAGACCAATTTAGTTTTGCGAGAATTTG
rJMSF038G18+ AGTGGGTCACTGTATATGGGTTTTCTCCAGCTGAGACCAATTTAGTTTTGCGAGAATTTG
____________________________________________________________
consensus AGTGGGTCACTGTATATGGGTTTTCTCCAGCTGAGACCAATTTAGTTTTGCGAGAATTTG
. : . : . : . : . : . :
rJMFF006H03+ AAAAGTGTGGTGTTATTCTGAAACACATTCCTGGTCCCCGGAATGCTAATTGGATGCACA
rJMSF038G18+ AAAAGTGTGGTGTTATTCTGAAACACATTCCTGGTCCCCGGAATGCTAATNGGATGCACA
____________________________________________________________
consensus AAAAGTGTGGTGTTATTCTGAAACACATTCCTGGTCCCCGGAATGCTAATTGGATGCACA
. : . : . : . : . : . :
rJMFF006H03+ TTTTGTATCAGAATCGTGCTGATGCACATAAAGCTCTTAGCAAAAATGGGATGCAAATAA
rJMFF049F19+ CTGATGCACATAAAGCTCTTAGCAAAAATGGGATGCAAATAA
rJMSF038G18+ TTTTGTATCAGAATCGTGCTGATGCACATAAAGCTCTTAGCAAAAATGGGATGCAAATAA
____________________________________________________________
consensus TTTTGTATCAGAATCGTGCTGATGCACATAAAGCTCTTAGCAAAAATGGGATGCAAATAA
. : . : . : . : . : . :
rJMFF006H03+ ACGGAGTTCTTATTATTGGAGTGAAACCAGTGGATCCAATGCAACGTCAAGGCCTGACCG
rJMFF049F19+ ACGGAGTTCTTATTATTGGAGTGAAACCAGTGGATCCAATGCAACGTCAAGGCCTGACCG
rJMSF038G18+ ACGGAGTTCTTATTATTGGAGTGAAACCAGTGGATCCAATGCAACGTCAAGGCCTGACCG
____________________________________________________________
consensus ACGGAGTTCTTATTATTGGAGTGAAACCAGTGGATCCAATGCAACGTCAAGGCCTGACCG
. : . : . : . : . : . :
rJMFF006H03+ AAAGGCTTAACAATCATGGATTTGTACCTTTACCCCTTGCACCCTCGAGCAAAACCCCAG
rJMFF049F19+ AAAGGCTTAACAATCATGGATTTGTACCTTTACCCCTTGCACCCTCGAGCAAAACCCCAG
rJMSF038G18+ AAAGGCTTAACAATCATGGATTTGTACCTTTACCCCTTGCACCCTCGAGCAAAACCCCAG
____________________________________________________________
consensus AAAGGCTTAACAATCATGGATTTGTACCTTTACCCCTTGCACCCTCGAGCAAAACCCCAG
. : . : . : . : . : . :
rJMFF006H03+ ATTCTATCCCCTTCAGAACGTCTTCACAGCCACACTACCTTCAGAATGGCAGTAGCAGTG
rJMFF049F19+ ATTCTATCCCCTTCAGAACGTCTTCACAGCCACACTACCTTCAGAATGGCAGTAGCAGTG
rJMSF038G18+ ATTCTATCCCCTTCAGAACGTCTTCACAGCCACACTACCTTCAGAATGGCAGTAGCAGTG
____________________________________________________________
consensus ATTCTATCCCCTTCAGAACGTCTTCACAGCCACACTACCTTCAGAATGGCAGTAGCAGTG
. : . : . : . : . : . :
rJMFF006H03+ GCAGACAGTCTGCTGGAACGGTCGCAGCACCAGCCAAATCTGTAGTGTCCAAAGTCATGG
rJMFF049F19+ GCAGACAGTCTGCTGGAACGGTCGCAGCACCAGCCAAATCTGTAGTGTCCAAAGTCATGG
rJMSF038G18+ GCAGACAGTCTGCTGGAACGGTCGCAGCACCAGCCAAATCTGTAGTGTCCAAAGTCATGG
____________________________________________________________
consensus GCAGACAGTCTGCTGGAACGGTCGCAGCACCAGCCAAATCTGTAGTGTCCAAAGTCATGG
. : . : . : . : . : . :
rJMFF006H03+ ACTTAATGTTTGGCGTCTAGTTGCATTCTCAGCACTATATCATGCCATGCTTCCTACATC
rJMFF049F19+ ACTTAATGTTTGGCGTCTAGTTGCATTCTCAGCACTATATCATGCCATGCTTCCTACATC
rJMSF038G18+ ACTTAATGTTTGGCGTCTAGTTGCATTCTCAGCACTATATCATGCCATGCTTCCTACATC
____________________________________________________________
consensus ACTTAATGTTTGGCGTCTAGTTGCATTCTCAGCACTATATCATGCCATGCTTCCTACATC
. : . : . : . : . : . :
rJMFF006H03+ CTATTGATCTTTTATATACATTGCTTTTCCAAGATGAATCACAATTGTAATCTCATCGTG
rJMFF049F19+ CTATTGATCTTTTATATACATTGCTTTTCCAAGATGAATCACAATTGTAATCTCATCGTG
rJMSF038G18+ CTATTGATCTTTTATATACATTGCTTTTCCAAGATGAATCACAATTGTAATCACATCGTG
____________________________________________________________
consensus CTATTGATCTTTTATATACATTGCTTTTCCAAGATGAATCACAATTGTAATCTCATCGTG
. : . : . : . : . : . :
rJMFF006H03+ CCCTGTTGAGATTTGAATCTGTATTTTGCGGAGTCTTTTTCACTTAGGTCGGGTTACTTG
rJMFF049F19+ CCCTGTTGAGATTTGAATCTGTATTTTGCGGAGTCTTTTTCACTTAGGTCGGGTTACTTG
rJMSF038G18+ CCCTGTTGAGATTTGAATCTGTATTTTGCGGAGTCTTTTTCACTTAGGTCGGGTTACTTG
____________________________________________________________
consensus CCCTGTTGAGATTTGAATCTGTATTTTGCGGAGTCTTTTTCACTTAGGTCGGGTTACTTG
. : . : . : . : . : . :
rJMFF006H03+ AACAAAAGATGGTATGCTATATTTATATGTTGAAATTCTGTCAAAGTGACAGGTTGAAAT
rJMFF049F19+ AACAAAAGATGGTATGCTATATTTATATGTTGAAATTCTGTCAAAGTGACAGGTTGAAAT
rJMSF038G18+ AACAAAAGATGGTATGCTATATTTATATGTTGAAATTCTGTCAAAGTGACAGGTTGAAAT
____________________________________________________________
consensus AACAAAAGATGGTATGCTATATTTATATGTTGAAATTCTGTCAAAGTGACAGGTTGAAAT
. : . : . : . : . : . :
rJMFF006H03+ CAACTTGTTATTTCTTGTTTCTCTGTTAATCTGAACCTTCTGCTCATCACAGTA
rJMFF049F19+ CAACTTGTTATTTCTTGTTTCTCTGTTAATCTGAACCTTCTGCTCATCACAGTATGTTAC
rJMSF038G18+ CAACTTGTTATTTCTTGTTTCTCTGTTAATCTGAACCTTCTGCTCATCACAGTATGTTAC
____________________________________________________________
consensus CAACTTGTTATTTCTTGTTTCTCTGTTAATCTGAACCTTCTGCTCATCACAGTATGTTAC
. : . : . : . : . : . :
rJMFF049F19+ TGAAAATTTTGGGG
rJMSF038G18+ TGAAAATTTTGGGGAAAGAGAAAAGCAACACGACAACTCTGTTCTGTCACCGGGAGCAGA
____________________________________________________________
consensus TGAAAATTTTGGGGAAAGAGAAAAGCAACACGACAACTCTGTTCTGTCACCGGGAGCAGA
. : . : . : . : . : . :
rJMSF038G18+ TTTGTTCATATGAATATAGGTGTTGGTTTACAATATTTTCAGTGTCGATGAGCATTTAAC
____________________________________________________________
consensus TTTGTTCATATGAATATAGGTGTTGGTTTACAATATTTTCAGTGTCGATGAGCATTTAAC
. : . : . : . : . : . :
rJMSF038G18+ AAATATTATGAGGAATTCTACTATATAGACTTTTAATCTGTACTTCCTCGCTAGAGATGA
____________________________________________________________
consensus AAATATTATGAGGAATTCTACTATATAGACTTTTAATCTGTACTTCCTCGCTAGAGATGA