| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF005M07 | Sequence | 214 | 005934 (14) | 191 | 008598 (4) | ref|XP_011086897.1| | 8e-15 | PREDICTED: retinoblastoma-related protein [Sesamum indicum] ref|XP_011086898.1| | |||
| JMSF007A08 | Sequence | 257 | 007762 (6) | 790 | 008598 (4) | ref|XP_011086897.1| | 2e-99 | PREDICTED: retinoblastoma-related protein [Sesamum indicum] ref|XP_011086898.1| | |||
| JMSF034N05 | Sequence | 657 | 007762 (6) | ref|XP_009774793.1| | 4e-62 | PREDICTED: retinoblastoma-related protein 1 isoform X4 [Nicotiana sylvestris] | 655 | 008598 (4) | emb|CDP18998.1| | 2e-70 | unnamed protein product [Coffea canephora] |
| JMSF037F23 | Sequence | 681 | 007762 (6) | ref|NP_001266162.1| | 4e-75 | retinoblastoma-related protein 1 [Solanum lycopersicum] gb|AFD98848.1| retinobla | 659 | 008598 (4) | emb|CDP18998.1| | 2e-70 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF007A08+ CAGAAAACAGC
____________________________________________________________
consensus CAGAAAACAGC
. : . : . : . : . : . :
rJMSF007A08+ CACATTGCCAACCACAAGTTTTTCGTAGTGTTTACGTTGATTGGACATCAGCGCGCCGCA
____________________________________________________________
consensus CACATTGCCAACCACAAGTTTTTCGTAGTGTTTACGTTGATTGGACATCAGCGCGCCGCA
. : . : . : . : . : . :
rJMSF007A08+ ATGGGAAGATGGGTCCTGATCATGTTGATATCATCGCCTTTTACAATGAAATATTCATTC
____________________________________________________________
consensus ATGGGAAGATGGGTCCTGATCATGTTGATATCATCGCCTTTTACAATGAAATATTCATTC
. : . : . : . : . : . :
rJMSF007A08+ CTGATGTAAAGCCACTTCTAGTTGAACTAGCCCCAACTGGAGCAGCCCAAAAGAATAAAA
rJMSF034N05+ GATGTAAAGCCACTTCTAGTTGAACTAGCCCCAACTGGAGCAGCCCAAAAGAATAAAA
rJMSF037F23+ GATGTAAAGCCACTTCTAGTTGAACTAGCCCCAACTGGAGCAGCCCAAAAGAATAAAA
____________________________________________________________
consensus CTGATGTAAAGCCACTTCTAGTTGAACTAGCCCCAACTGGAGCAGCCCAAAAGAATAAAA
. : . : . : . : . : . :
rJMSF007A08+ ACATTGCTGAAGCTACAAATAGTGGTGATGGTCAGTGCCCTATGTCACCAAAGACATCAC
rJMSF034N05+ ACATTGCTGAAGCTACAAATAGTGGTGATGGTCAGTGCCCTATGTCACCAAAGACATCAC
rJMSF037F23+ ACATTGCTGAAGCTACAAATAGTGGTGATGGTCAGTGCCCTATGTCACCAAAGACATCAC
____________________________________________________________
consensus ACATTGCTGAAGCTACAAATAGTGGTGATGGTCAGTGCCCTATGTCACCAAAGACATCAC
. : . : . : . : . : . :
rJMSF007A08+ CCTTTCCTAGTCTCCCTGACATGTCTCCAAAAAAAGTATCTGCAACACGTAATGTTTATG
rJMSF034N05+ CCTTTCCTAGTCTCCCTGACATGTCTCCAAAAAAAGTATCTGCAACACGTAATGTTTATG
rJMSF037F23+ CCTTTCCTAGTCTCCCTGACATGTCTCCAAAAAAAGTATCTGCAACACGTAATGTTTATG
____________________________________________________________
consensus CCTTTCCTAGTCTCCCTGACATGTCTCCAAAAAAAGTATCTGCAACACGTAATGTTTATG
. : . : . : . : . : . :
rJMSF007A08+ TCTCTCCACTGCGCTCATCTAAGATGGATACTTTGATATCTCAAGGCTCTAAAAGCTATT
rJMSF005M07+ AAAGCTATT
rJMSF034N05+ TCTCTCCACTGCGCTCATCTAAGATGGATACTTTGATATCTCAAGGCTCTAAAAGCTATT
rJMSF037F23+ TCTCTCCACTGCGCTCATCTAAGATGGATACTTTGATATCTCAAGGCTCTAAAAGCTATT
____________________________________________________________
consensus TCTCTCCACTGCGCTCATCTAAGATGGATACTTTGATATCTCAAGGCTCTAAAAGCTATT
. : . : . : . : . : . :
rJMSF007A08+ ATGCTTGTGTTGGAGAGAGTACTCATGCATATCAGAGCCCCTCAAAAGACTTGAGTGCCA
rJMSF005M07+ ATGCTTGTGCTGGNGAGAGTACTCATGCATATCAGAGCCCCTCAAAAGACTTGAGTGCCA
rJMSF034N05+ ATGCTTGTGTTGGAGAGAGTACTCATGCATATCAGAGCCCCTCAAAAGACTTGAGTGCCA
rJMSF037F23+ ATGCTTGTGTTGGAGAGAGTACTCATGCATATCAGAGCCCCTCAAAAGACTTGAGTGCCA
____________________________________________________________
consensus ATGCTTGTGTTGGAGAGAGTACTCATGCATATCAGAGCCCCTCAAAAGACTTGAGTGCCA
. : . : . : . : . : . :
rJMSF007A08+ TCAATAACCGCCTGAATGCCGGTGGTCGAAAACTTAGAGGCGCACTGAACTTTGATGATG
rJMSF005M07+ TCAATAACCGCCNGAATGCCGGTGGTCGAAAACNTAGAGGCGCACTGAANTTTGATGATG
rJMSF034N05+ TCAATAACCGCCTGAATGCCGGTGGTCGAAAACTTAGAGGCGCACTGAACTTTGATGATG
rJMSF037F23+ TCAATAACCGCCTGAATGCCGGTGGTCGAAAACTTAGAGGCGCACTGAACTTTGATGATG
____________________________________________________________
consensus TCAATAACCGCCTGAATGCCGGTGGTCGAAAACTTAGAGGCGCACTGAACTTTGATGATG
. : . : . : . : . : . :
rJMSF007A08+ TGGATGCGGGTTTGGTTAGTGACTCTCTGGTCGCAAACAGCCTATACCTTCAGAACGGAA
rJMSF005M07+ TGGATGCGGGTTTGGTTAGTGACTCTCNGGTCGCAAACAGCCTATACTNTCAGAACGGAA
rJMSF034N05+ TGGATGCGGGTTTGGTTAGTGACTCTCTGGTCGCAAACAGCCTATACCTTCAGAACGGAA
rJMSF037F23+ TGGATGCGGGTTTGGTTAGTGACTCTCTGGTCGCAAACAGCCTATACCTTCAGAACGGAA
____________________________________________________________
consensus TGGATGCGGGTTTGGTTAGTGACTCTCTGGTCGCAAACAGCCTATACCTTCAGAACGGAA
. : . : . : . : . : . :
rJMSF007A08+ ACTCAGGATCTTCACCATGTTTGGCCGTTAAATCTGAGCAGCCAGATTCATGAGGTTGCT
rJMSF005M07+ AC
rJMSF034N05+ ACTCAGGATCTTCACCATGTTTGGCCGTTAAATCTGAGCAGCCAGATTCATGAGGTTGCT
rJMSF037F23+ ACTCAGGATCTTCACCATGTTTGGCCGTTAAATCTGAGCAGCCAGATTCATGAGGTTGCT
____________________________________________________________
consensus ACTCAGGATCTTCACCATGTTTGGCCGTTAAATCTGAGCAGCCAGATTCATGAGGTTGCT
. : . : . : . : . : . :
rJMSF007A08+ TGCAAGTTGCAGCAATGCATGTAAAATCCTATGTTTCTAATATCGTTTTCATGTTATAGA
rJMSF034N05+ TGCAAGTTGCAGCAATGCATGTAAAATCCTATGTTTCTAATATCGTTTTCATGTTATAGA
rJMSF037F23+ TGCAAGTTGCAGCAATGCATGTAAAATCCTATGTTTCTAATATCGTTTTCATGTTATAGA
____________________________________________________________
consensus TGCAAGTTGCAGCAATGCATGTAAAATCCTATGTTTCTAATATCGTTTTCATGTTATAGA
. : . : . : . : . : . :
rJMSF007A08+ CAATAATTCTATTGTAGATGATGACTTGGGGGGTGTTGTATGAGCGGTAAGTTAATGTAA
rJMSF034N05+ CAATAATTCTATTGTAGATGATGACTTGGGGGGTGTTGTATGAGCGGTAAGTTAATGTAA
rJMSF037F23+ CAATAATTCTATTGTAGATGATGACTTGGGGGGTGTTGTATGAGCGGTAAGTTAATGTAA
____________________________________________________________
consensus CAATAATTCTATTGTAGATGATGACTTGGGGGGTGTTGTATGAGCGGTAAGTTAATGTAA
. : . : . : . : . : . :
rJMSF007A08+ AATATCCGCCACTGCCCCTACTGTTCTAGTTGGTGTTTCTTGATC
rJMSF034N05+ AATATCCGCCACTGCCCCTACTGTTCTAGTTGGTGTTTCTTGATC
rJMSF037F23+ AATATCCGCCACTGCCCCTACTGTTCTAGTTGGTGTTTCTTGATCCTTGATGACCAAATT
____________________________________________________________
consensus AATATCCGCCACTGCCCCTACTGTTCTAGTTGGTGTTTCTTGATCCTTGATGACCAAATT