Contig 008597:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS034H04Sequence662008597 (2)ref|XP_010230742.1|1e-15PREDICTED: translational activator GCN1 isoform X2 [Brachypodium distachyon]
JMSF037F10Sequence668008597 (2)ref|XP_010276331.1|9e-29PREDICTED: probable acyl-activating enzyme 18, peroxisomal isoform X2 [Nelumbo

Alignment

This contig is upended


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JMFS034H04-                                                          GGGCTGCAGGTGC
                      ____________________________________________________________
consensus                                                            GGGCTGCAGGTGC
 
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JMFS034H04-           AATCGTATATCAAGAGAAGCAAGACAAGACGCAGAAATGGAGCCCTACAAGATCCCGCCG
                      ____________________________________________________________
consensus             AATCGTATATCAAGAGAAGCAAGACAAGACGCAGAAATGGAGCCCTACAAGATCCCGCCG
 
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JMFS034H04-           GGAAGGCGCTGTGCACAACCTCATCTTCCACCAACACCGCCGATGATGCTACTGCGAAAG
                      ____________________________________________________________
consensus             GGAAGGCGCTGTGCACAACCTCATCTTCCACCAACACCGCCGATGATGCTACTGCGAAAG
 
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JMFS034H04-           ACTGCTGCGATCTCCCCGCTTTCGCCGACCCGTCAATGCTGCCTTCAATGCACGTGCTTT
                      ____________________________________________________________
consensus             ACTGCTGCGATCTCCCCGCTTTCGCCGACCCGTCAATGCTGCCTTCAATGCACGTGCTTT
 
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JMFS034H04-           GGAGCTTTAGCAGAGGTTGCTGGACCTGGTCTTGATGTCCCCCTTGGTACCATCCTTCCT
                      ____________________________________________________________
consensus             GGAGCTTTAGCAGAGGTTGCTGGACCTGGTCTTGATGTCCCCCTTGGTACCATCCTTCCT
 
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JMFS034H04-           GCTTTACTCACTGCAATGGGCTATACTGATATGCCGCAATGCTATTTACTTGGTTTTCTC
rJMSF037F10+                                               AATGCCATTTACTTGGTTTCGTC
                      ____________________________________________________________
consensus             GCTTTACTCACTGCAATGGGCTATACTGATATGCCGCAATGCTATTTACTTGGTTTTGTC
 
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JMFS034H04-           TTTCACATCATTTAAA-TTTGAGTCATTGCTTAAGTTGATTTGTGTTTTTCTTTTTTCAT
rJMSF037F10+          TTTCACATCATTTAAATTTTGAGTCATTGCTTAATTTGATTTGTGTTT---TTTTATCAT
                      ____________________________________________________________
consensus             TTTCACATCATTTAAATTTTGAGTCATTGCTTAATTTGATTTGTGTTTTTCTTTTTTCAT
 
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JMFS034H04-           TGCATAATTTGCACGTGTCATGCTTTCA-CTATGAAATATAGGAGGTTCAAAGTCTCGCC
rJMSF037F10+          TGCACAATTTGCATGTGTCATGCTTTCATCTTGAAAATATCGGAGGTTCAATGTCTTGCC
                      ____________________________________________________________
consensus             TGCATAATTTGCATGTGTCATGCTTTCATCTTTGAAATATCGGAGGTTCAATGTCTTGCC
 
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JMFS034H04-           AAGAAAGCAGCAGAAACTGTTGTCACTGTAATTGACGAGGAAGGTATCGAGTCTTTGCTG
rJMSF037F10+          AAGAAAGCAGCAGAAACTGTTGTCACTGTAATTGGCGAGGAAGGTATCAAGTCTTTGCTG
                      ____________________________________________________________
consensus             AAGAAAGCAGCAGAAACTGTTGTCACTGTAATTGGCGAGGAAGGTATCGAGTCTTTGCTG
 
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JMFS034H04-           TAGGGGCTTCTTAAAGGAGTTGGAGATATTCA-GGCTTCAATCAGACAAAGTTCTGCATA
rJMSF037F10+          TTGGGGCTTCTCAAAGGAGTTGGAGATATTCAGGGCTTCAGTCAGACAAAGTTCTGCATA
                      ____________________________________________________________
consensus             TTGGGGCTTCTTAAAGGAGTTGGAGATATTCAGGGCTTCAGTCAGACAAAGTTCTGCATA
 
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JMFS034H04-           CTTAACTGGATATTTATTCAAAACCAGTGATCTATATCTTGTTGATGGGGCTC       
rJMSF037F10+          CTTTATTGGATATTTATTAAAAACCAGTTATCTATATCTTGTTGATGAGGCTCCAAATGT
                      ____________________________________________________________
consensus             CTTTATTGGATATTTATTCAAAACCAGTTATCTATATCTTGTTGATGGGGCTCCAAATGT
 
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rJMSF037F10+          GATATCCACCCTGATTATTTTACTAAGTGATTCAGATTCAGCTACCTTGACGGAGATCCA
                      ____________________________________________________________
consensus             GATATCCACCCTGATTATTTTACTAAGTGATTCAGATTCAGCTACCTTGACGGAGATCCA
 
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rJMSF037F10+          AAAGCAATACCTTGGACTCACCTCTCCCCCATGAGAACTGCTGCTGATGTCCAAGCTGGA
                      ____________________________________________________________
consensus             AAAGCAATACCTTGGACTCACCTCTCCCCCATGAGAACTGCTGCTGATGTCCAAGCTGGA
 
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rJMSF037F10+          GATGTATATTGCTGGCCAAAAAATTTGGGATGGGTGATGGGGCCAACTTTAGTATATGCT
                      ____________________________________________________________
consensus             GATGTATATTGCTGGCCAAAAAATTTGGGATGGGTGATGGGGCCAACTTTAGTATATGCT
 
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rJMSF037F10+          TGCTTTTTGACTGGTGCAACTCTGGTACTCTATCATGGATCTCCTTTAAGCCGTAGTTTT
                      ____________________________________________________________
consensus             TGCTTTTTGACTGGTGCAACTCTGGTACTCTATCATGGATCTCCTTTAAGCCGTAGTTTT
 
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rJMSF037F10+          GGAAAATTTGTTCAGGTGATTCACTAACCTCTGCATTTAACTTGCAAGGGATCATTATTG
                      ____________________________________________________________
consensus             GGAAAATTTGTTCAGGTGATTCACTAACCTCTGCATTTAACTTGCAAGGGATCATTATTG