Contig 008590:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015H04Sequence459008590 (5)ref|XP_010088502.1|2e-16Mismatch repair endonuclease PMS2 [Morus notabilis] gb|EXB36415.1| Mismatch repa
JMFS068C05Sequence638008590 (5)gb|KDP28142.1|3e-87hypothetical protein JCGZ_13913 [Jatropha curcas]
JMFS068C07Sequence617008590 (5)gb|KDP28142.1|2e-87hypothetical protein JCGZ_13913 [Jatropha curcas]
JMSF036C16Sequence710009454 (3)ref|XP_009598046.1|5e-109PREDICTED: DNA mismatch repair protein PMS1 isoform X3 [Nicotiana tomentosiform766008590 (5)gb|KDP28142.1|2e-116hypothetical protein JCGZ_13913 [Jatropha curcas]
JMSF036E06Sequence669009454 (3)ref|XP_009598046.1|9e-111PREDICTED: DNA mismatch repair protein PMS1 isoform X3 [Nicotiana tomentosiform734008590 (5)gb|KDP28142.1|1e-86hypothetical protein JCGZ_13913 [Jatropha curcas]

Alignment

This contig is upended


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JMCP015H04+                           ACAACTATCTAACAGGCTCATCAGTACTTTTCCCATTAAATATA
                      ____________________________________________________________
consensus                             ACAACTATCTAACAGGCTCATCAGTACTTTTCCCATTAAATATA
 
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JMCP015H04+           TCCGAATTCACACGGTTGAGTTACGGAGGAAAAATATGTAACGGATAATGGGTTGCAGGC
rJMSF036E06-                                             ATGTAACGGATAATGGGTTGCAGGC
                      ____________________________________________________________
consensus             TCCGAATTCACACGGTTGAGTTACGGAGGAAAAATATGTAACGGATAATGGGTTGCAGGC
 
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JMCP015H04+           TCTTTTCTTACCTGATTACATTGAAAAAGACTACAATAACATCCATGCAACTCAAAAACT
rJMSF036E06-          TCTTTTCTTACCTGATTACATTGAAAAAGACTACAATAACATCCATGCAACTCAAAAACT
                      ____________________________________________________________
consensus             TCTTTTCTTACCTGATTACATTGAAAAAGACTACAATAACATCCATGCAACTCAAAAACT
 
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JMCP015H04+           GATTGTATATACAAAATTTTCACCTATTTCACAGGGTTCAAAATAAGTTGGTGGCAGTGC
JMFS068C05+                                          CAGGGTTCAAAATAAGTTGGTGGCAGTGC
rJMSF036E06-          GATTGTATATACAAAATTTTCACCTATTTCACAGGGTTCAAAATAAGTTGGTGGCAGTGC
JMFS068C07+                                           AGGGTTCAAAATAAGTTGGTGGCAGTGC
rJMSF036C16-                                         CAGGGTTCAAAATAAGTTGGTGGCAGTGC
                      ____________________________________________________________
consensus             GATTGTATATACAAAATTTTCACCTATTTCACAGGGTTCAAAATAAGTTGGTGGCAGTGC
 
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JMCP015H04+           ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
JMFS068C05+           ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
rJMSF036E06-          ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
JMFS068C07+           ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
rJMSF036C16-          ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
                      ____________________________________________________________
consensus             ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
 
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JMCP015H04+           AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
JMFS068C05+           AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
rJMSF036E06-          AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
JMFS068C07+           AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
rJMSF036C16-          AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
                      ____________________________________________________________
consensus             AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
 
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JMCP015H04+           TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
JMFS068C05+           TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
rJMSF036E06-          TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
JMFS068C07+           TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
rJMSF036C16-          TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
                      ____________________________________________________________
consensus             TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
 
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JMCP015H04+           AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCC     
JMFS068C05+           AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCCCAGTG
rJMSF036E06-          AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCCCAGTG
JMFS068C07+           AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCCCAGTG
rJMSF036C16-          AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCCCAGTG
                      ____________________________________________________________
consensus             AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCCCAGTG
 
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JMFS068C05+           GATCTCCAATCATAACAGATGATCTGCAAGCTCGTGATGCTAACATTGCACGTACTCTAG
rJMSF036E06-          GATCTCCAATCATAACAGATGATCTGCAAGCTCGTGATGCTAACATTGCACGTACTCTAG
JMFS068C07+           GATCTCCAATCATAACAGATGATCTGCAAGCTCGTGATGCTAACATTGCACGTACTCTAG
rJMSF036C16-          GATCTCCAATCATAACAGATGATCTGCAAGCTCGTGATGCTAACATTGCACGTACTCTAG
                      ____________________________________________________________
consensus             GATCTCCAATCATAACAGATGATCTGCAAGCTCGTGATGCTAACATTGCACGTACTCTAG
 
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JMFS068C05+           GGGGGCAAATTGAATCAGATGTATCCTTTCTGTAACTAAGCGTGATATGACAGTCTTCTT
rJMSF036E06-          GGGGGCAAATTGAATCAGATGTATCCTTTCTGTAACTAAGCGTGATATGACAGTCTTCTT
JMFS068C07+           GGGGGCAAATTGAATCAGATGTATCCTTTCTGTAACTAAGCGTGATATGACAGTCTTCTT
rJMSF036C16-          GGGGGCAAATTGAATCAGATGTATCCTTTCTGTAACTAAGCGTGATATGACAGTCTTCTT
                      ____________________________________________________________
consensus             GGGGGCAAATTGAATCAGATGTATCCTTTCTGTAACTAAGCGTGATATGACAGTCTTCTT
 
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JMFS068C05+           GGCTGCTGGCAAGAATAGAAATTAGTTCCTTCACATCTGCAACTCCAAAAGTTATGTTTT
rJMSF036E06-          GGCTGCTGGCAAGAATAGAAATTAGTTCCTTCACATCTGCAACTCCAAAAGTTATGTTTT
JMFS068C07+           GGCTGCTGGCAAGAATAGAAATTAGTTCCTTCACATCTGCAACTCCAAAAGTTATGTTTT
rJMSF036C16-          GGCTGCTGGCAAGAATAGAAATTAGTTCCTTCACATCTGCAACTCCAAAAGTTATGTTTT
                      ____________________________________________________________
consensus             GGCTGCTGGCAAGAATAGAAATTAGTTCCTTCACATCTGCAACTCCAAAAGTTATGTTTT
 
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JMFS068C05+           TACTGAAAGGAACTGCTTTTAGATTGAAGCGAAGCCCAGGAGGAGCATGCAAATCTTCTT
rJMSF036E06-          TACTGAAAGGAACTGCTTTTAGATTGAAGCGAAGCCCAGGAGGAGCATGCAAATCTTCTT
JMFS068C07+           TACTGAAAGGAACTGCTTTTAGATTGAAGCGAAGCCCAGGAGGAGCATGCAAATCTTCTT
rJMSF036C16-          TACTGAAAGGAACTGCTTTTAGATTGAAGCGAAGCCCAGGAGGAGCATGCAAATCTTCTT
                      ____________________________________________________________
consensus             TACTGAAAGGAACTGCTTTTAGATTGAAGCGAAGCCCAGGAGGAGCATGCAAATCTTCTT
 
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JMFS068C05+           CCAAGGAAAACCCATTTTTCCTTATAGTGTCCATGTTCATGGAAACAACTATTTCCTCTT
rJMSF036E06-          CCAAGGAAAACCCATTTTTCCTTATAGTGTCCATGTTCATGGAAACAACTATTTCCTCTT
JMFS068C07+           CCAAGGAAAACCCATTTTTCCTTATAGTGTCCATGTTCATGGAAACAACTATTTCCTCTT
rJMSF036C16-          CCAAGGAAAACCCATTTTTCCTTATAGTGTCCATGTTCATGGAAACAACTATTTCCTCTT
                      ____________________________________________________________
consensus             CCAAGGAAAACCCATTTTTCCTTATAGTGTCCATGTTCATGGAAACAACTATTTCCTCTT
 
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JMFS068C05+           CAGGAGATAAATCCATCTTCAAGGGCCGAAGCAAAGGTTGCTGGTTTAA           
rJMSF036E06-          CAGGAGATAAATCCATCTTCAAGGGCCGAAGCAAAGGTTGCTGGTTTAA           
JMFS068C07+           CAGGAGATAAATCCATCTTCAAGGGCCGAAGCAAAGGTTGCTGGTTTAA           
rJMSF036C16-          CAGGAGATAAATCCATCTTCAAGGGCCGAAGCAAAGGTTGCTGGTTTAAAATTGTTGACT
                      ____________________________________________________________
consensus             CAGGAGATAAATCCATCTTCAAGGGCCGAAGCAAAGGTTGCTGGTTTAAAATTGTTGACT
 
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rJMSF036C16-          CTGATAATCGTTCATAGTTATATTTTTCATCTGCGGCATGCTGATCAACAATAAAAAGGT
                      ____________________________________________________________
consensus             CTGATAATCGTTCATAGTTATATTTTTCATCTGCGGCATGCTGATCAACAATAAAAAGGT
 
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rJMSF036C16-          CTCGATCTAACTTGCCAATGATAAATCCAAGATGGAATTGCCCAATGACCTTCATTTGAG
                      ____________________________________________________________
consensus             CTCGATCTAACTTGCCAATGATAAATCCAAGATGGAATTGCCCAATGACCTTCATTTGAG