Contig 008588:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046L19+                                AGAACGCGGGNCAAGGTTTTTCGAGCAGGATATGGGGT
                      ____________________________________________________________
consensus                                   AGAACGCGGGNCAAGGTTTTTCGAGCAGGATATGGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M13-                                   CTAATCAAAGAACGGGTGCCCACGAAGGAACTCTAC
rJMSF046L19+          TCCTGTCCTTCCCAAAACGAGACGCTAATCAAAGAACGGGTGCCCACGAAGGAACTCTAC
rJMSF035O19+                       AAAACGAGACGCTAATCAAAGAACGGGTGCCCACGAAGGAACTCTAC
                      ____________________________________________________________
consensus             TCCTGTCCTTCCCAAAACGAGACGCTAATCAAAGAACGGGTGCCCACGAAGGAACTCTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M13-           TTAAATTTGAGATCCTCGGACACTTGGGTAGCCGAGTATAGAAAGTGGATGGACAAAGTT
rJMSF046L19+          TTAAATTTGAGATCCTCGGACACTTGGGTAGCCGAGTATAGAAAGTGGATGGACAAAGTT
rJMSF035O19+          TTAAATTTGAGATCCTCGGACACTTGGGTAGCCGAGTATAGAAAGTGGATGGACAAAGTT
                      ____________________________________________________________
consensus             TTAAATTTGAGATCCTCGGACACTTGGGTAGCCGAGTATAGAAAGTGGATGGACAAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M13-           GGGCACGGGATGCCTTACTATTTCGGGCACAGCTCCCTTTCCCCTCCCGAGCAGCCGGCC
rJMSF046L19+          GGGCACGGGATGCCTTACTATTTCGGGCACAGCTCCCTTTCCCCTCCCGAGCAGCCGGCC
rJMSF035O19+          GGGCACGGGATGCCTTACTATTTCGGGCACAGCTCCCTTTCCCCTCCCGAGCAGCCGGCC
                      ____________________________________________________________
consensus             GGGCACGGGATGCCTTACTATTTCGGGCACAGCTCCCTTTCCCCTCCCGAGCAGCCGGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M13-           GTGGTCGAGCACGCCCCCGCGGGCCTCCTTGCCAGCCTCTCGGCTTCCCAACCAGCCAAG
rJMSF046L19+          GTGGTCGAGCACGCCCCCGCGGGCCTCCTTGCCAGCCTCTCGGCTTCCCAACCAGCCAAG
rJMSF035O19+          GTGGTCGAGCACGCCCCCGCGGGCCTCCTTGCCAGCCTCTCGGCTTCCCAACCAGCCAAG
                      ____________________________________________________________
consensus             GTGGTCGAGCACGCCCCCGCGGGCCTCCTTGCCAGCCTCTCGGCTTCCCAACCAGCCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M13-           GGAGGGCTCGGGACGATGCACGCTCCGAACTTCGCCAACAGATACTTCCGACACGTGATC
rJMSF046L19+          GGAGGGCTCGGGACGATGCACGCTCCGAACTTCGCCAACAGATACTTCCGACACGTGATC
rJMSF035O19+          GGAGGGCTCGGGACGATGCACGCTCCGAACTTCGCCAACAGATACTTCCGACACGTGATC
                      ____________________________________________________________
consensus             GGAGGGCTCGGGACGATGCACGCTCCGAACTTCGCCAACAGATACTTCCGACACGTGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M13-           CACTGCAAGTCCTGCAGGGGCGTGGTCAAGAGGTTCGAGACGTGGAAGAACGCCCTCGCT
rJMSF046L19+          CACTGCAAGTCCTGCAGGGGCGTGGTCAAGAGGTTCGAGACGTGGAAGAACGCCCTCGCT
rJMSF035O19+          CACTGCAAGTCCTGCAGGGGCGTGGTCAAGAGGTTCGAGACGTGGAAGAACGCCCTCGCT
                      ____________________________________________________________
consensus             CACTGCAAGTCCTGCAGGGGCGTGGTCAAGAGGTTCGAGACGTGGAAGAACGCCCTCGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M13-           GCCGCCGCCCTCGTCTCGACTGCGGTGGCGATTCTGGTGTCGGGAAGGCAGTGGAAGGCG
rJMSF046L19+          GCCGCCGCCCTCGTCTCGACTGCGGTGGCGATTCTGGTGTCGGGAAGGCAGTGGAAGGCG
rJMSF035O19+          GCCGCCGCCCTCGTCTCGACTGCGGTGGCGATTCTGGTGTCGGGAAGGCAGTGGAAGGCG
                      ____________________________________________________________
consensus             GCCGCCGCCCTCGTCTCGACTGCGGTGGCGATTCTGGTGTCGGGAAGGCAGTGGAAGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M13-           GCGTTCTTGCTCTCGATGGCCCTGTGCTTGGCCGGGGTATATGCCTGCTCTACTGCAATT
rJMSF046L19+          GCGTTCTTGCTCTCGATGGCCCTGTGCTTGGCCGGGGTATATGCCTGCTCTACTGCAATT
rJMSF035O19+          GCGTTCTTGCTCTCGATGGCCCTGTGCTTGGCCGGGGTATATGCCTGCTCTACTGCAATT
                      ____________________________________________________________
consensus             GCGTTCTTGCTCTCGATGGCCCTGTGCTTGGCCGGGGTATATGCCTGCTCTACTGCAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M13-           GCCATGAATACAACAAACTTCATAAGGACTCACAGAAGGCTGTGAATCCAGAGAATTTAG
rJMSF046L19+          GCCATGAATACAACAAACTTCATAAGGACTCACAGAAGGCTGTGAATCCAGAGAATTTAG
rJMSF035O19+          GCCATGAATACAACAAACTTCATAAGGACTCACAGAAGGCTGTGAATCCAGAGAATTTAG
                      ____________________________________________________________
consensus             GCCATGAATACAACAAACTTCATAAGGACTCACAGAAGGCTGTGAATCCAGAGAATTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030M13-           TTCAGATTTGGTTATATATAGTTGCATGCAGTTTTCAAGATCTT                
rJMSF046L19+          TTCAGATTTGGTTATATATAGTTGCATGCAGTTTTCAAGATCTTAAAACTGTGAAGGGAG
rJMSF035O19+          TTCAGATTTGGTTATATATAGTTGCATGCAGTTTTCAAGATCTTAAAACTGTGAAGGGAG
                      ____________________________________________________________
consensus             TTCAGATTTGGTTATATATAGTTGCATGCAGTTTTCAAGATCTTAAAACTGTGAAGGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046L19+          GATTAGAACTTCCTCATTTTAGCAGTAGACTAGGGGGGGGTTAGCTTTGTGGTATATGGA
rJMSF035O19+          GATTAGAACTTCCTCATTTTAGCAGTAGACTA-GGGGGGGTTAGCTTTGTGGTATATGGA
                      ____________________________________________________________
consensus             GATTAGAACTTCCTCATTTTAGCAGTAGACTAGGGGGGGGTTAGCTTTGTGGTATATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046L19+          ACTCGATGTGTTTTTATTGGCCAAAAAATATGAAGATTGTACAGAAA             
rJMSF035O19+          ACTCGATGTGTTTTTATTGGCCAAAAAATATGAAGATTGTACAGAAACTTGGGATGCTTA
                      ____________________________________________________________
consensus             ACTCGATGTGTTTTTATTGGCCAAAAAATATGAAGATTGTACAGAAACTTGGGATGCTTA