| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN002G04 | Sequence | 584 | 008584 (6) | ref|XP_008438484.1| | 4e-62 | PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] | |||||
| JMFN005O07 | Sequence | 631 | 008584 (6) | ref|XP_008438484.1| | 2e-62 | PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] | |||||
| JMSF020B12 | Sequence | 689 | 008584 (6) | ref|XP_008438484.1| | 2e-62 | PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] | 640 | 008584 (6) | ref|XP_008438484.1| | 1e-62 | PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] |
| JMSF035D08 | Sequence | 238 | 009448 (7) | 331 | 008584 (6) | ref|XP_011091271.1| | 5e-26 | PREDICTED: 50S ribosomal protein L28, chloroplastic [Sesamum indicum] | |||
| JMSF036L15 | Sequence | 256 | 008584 (6) | gb|KHG06244.1| | 5e-18 | 50S ribosomal L28, chloroplastic [Gossypium arboreum] | |||||
This contig is upended
. : . : . : . : . : . :
JMSF020B12+ ATAAATTTACCATTTTGTTAAACAAATTTATACA
____________________________________________________________
consensus ATAAATTTACCATTTTGTTAAACAAATTTATACA
. : . : . : . : . : . :
rJMSF020B12- ATTTGGAACAAGAAATATCCCATACAAATACTATCATTTGTGTAG
JMFN005O07+ AAGAAATATCCCATACAAATACTATCATTTGTGTAG
JMFN002G04+ CAAATACTATCATTTGTGTAG
JMSF020B12+ GATTAAGGAACTTCAATTTGGAACAAGAAATATCCCATACAAATACTATCATTTGTGTAG
____________________________________________________________
consensus GATTAAGGAACTTCAATTTGGAACAAGAAATATCCCATACAAATACTATCATTTGTGTAG
. : . : . : . : . : . :
rJMSF020B12- GTATTTTACTTACAAATTAATGGCAAAAAGAAAGAGTCGTGAGTTCATTTAATACATAAG
JMFN005O07+ GTATTTTACTTACAAATTAATGGCANAAAGAAAGAGTCGTGAGTTCATTTAATACATAAG
JMFN002G04+ GTATTTTACTTACAAATTAATGGCAAAAAGAAAGAGTCGTGAGTTCATTTAATACATAAG
rJMSF036L15- AGAAAGAGTCGTGAGTTCNTTTAATACNTNAG
JMSF020B12+ GTATTTTACTTACAAATTAATGGCAAAAAGAAAGAGTCGTGAGTTCATTTAATACATAAG
____________________________________________________________
consensus GTATTTTACTTACAAATTAATGGCAAAAAGAAAGAGTCGTGAGTTCATTTAATACATAAG
. : . : . : . : . : . :
rJMSF020B12- CAACAAACATCAATCCACACATATCAAGCAAAAAAACAAGGTGATTATCATTCTATTCTT
JMFN005O07+ CAACAAACATCAATCCACACATATCAAGCAAAAAAACAAGGTGATTATCATTCTATTCTT
JMFN002G04+ CAACAAACATCAATCCACACATATCAAGCAAAAAAACAAGGTGATTATCATTCTATTCTT
rJMSF036L15- CAACAAACATCAATCCACACATATCATGCANAAAAACANGGNGATTATCATTCTATTCTT
JMSF020B12+ CAACAAACATCAATCCACACATATCAAGCAAAAAAACAAGGTGATTATCATTCTATTCTT
____________________________________________________________
consensus CAACAAACATCAATCCACACATATCAAGCAAAAAAACAAGGTGATTATCATTCTATTCTT
. : . : . : . : . : . :
rJMSF020B12- TGCTGAGGTCGATTCCAGCCTTCTTAGCAACAGCATCAAGTCCGTTCTTTTCTATTGTCT
JMFN005O07+ TGCTGAGGTCGATTCCAGCCTTCTTAGCAACAGCATCAAGTCCGTTCTTTTCTATTGTCT
JMFN002G04+ TGCTGAGGTCGATTCCAGCCTTCTTAGCAACAGCATCAAGTCCGTTCTTTTCTATTGTCT
rJMSF036L15- TGCTGAGGTCNATTCCCGCCTTCTTAGCAACAGCATCAAGTCCGTTCTTTTCTATTGTCT
JMSF020B12+ TGCTGAGGTCGATTCCAGCCTTCTTAGCAACAGCATCAAGTCCGTTCTTTTCTATTGTCT
____________________________________________________________
consensus TGCTGAGGTCGATTCCAGCCTTCTTAGCAACAGCATCAAGTCCGTTCTTTTCTATTGTCT
. : . : . : . : . : . :
rJMSF020B12- TTAACGCCTTTGTTGACAGGCGCAGTTTCACATACCGCTTCCCAGCTTCCCACCAAAGCT
JMFN005O07+ TTAACGCCTTTGTTGACAGGCGCAGTTTCACATACCGCTTCCCAGCTTCCCACCAAAGCT
JMFN002G04+ TTAACGCCTTTGTTGACAGGCGCAGTTTCACATACCGCTTCCCAGCTTCCCACCAAAGCT
rJMSF036L15- TTAACGNCNTTGTNGACNGGCGCAATTTCNCATACCGCTTCCCAGCTTCCCANCNNAGCT
JMSF020B12+ TTAACGCCTTTGTTGACAGGCGCAGTTTCACATACCGCTTCCCAGCTTCCCACCAAAGCT
____________________________________________________________
consensus TTAACGCCTTTGTTGACAGGCGCAGTTTCACATACCGCTTCCCAGCTTCCCACCAAAGCT
. : . : . : . : . : . :
rJMSF020B12- TTTTGTACTGAAGGTTCACAAATTGCAACCTTTTTGTCTTGTGGTTTGAATGAGAAACTT
JMFN005O07+ TTTTGTACTGAAGGTTCACAAATTGCAACCTTTTTGTCTTGTGGTTTGAATGAGAAACTT
JMFN002G04+ TTTTGTACTGAAGGTTCACAAATTGCAACCTTTTTGTCTTGTGGTTTGAATGAGAAACTT
rJMSF036L15- TTTTGNACTGANGGTTCACNAATTGCAACCTTTTTGTCTTGT
JMSF020B12+ TTTTGTACTGAAGGTTCACAAATTGCAACCTTTTTGTCTTGTGGTTTGAATGAGAAACTT
rJMSF035D08- CTTTTTGTCTTGTGGTTTGAATGAGAAACTT
____________________________________________________________
consensus TTTTGTACTGAAGGTTCACAAATTGCAACCTTTTTGTCTTGTGGTTTGAATGAGAAACTT
. : . : . : . : . : . :
rJMSF020B12- TGTTTGCCTTGTTGGCCTTCTTCCCTGTGAAGGGACACACTCTGCGAGCAATAGGTTGTA
JMFN005O07+ TGTTTGCCTTGTTGGCCTTCTTCCCTGTGAAGGGACACACTCTGCGAGCAATAGGTTGTA
JMFN002G04+ TGTTTGCCTTGTTGGCCTTCTTCCCTGTGAAGGGACACACTCTGCGAGCAATAGGTTGTA
JMSF020B12+ TGTTTGCCTTGTTGGCCTTCTTCCCTGTGAAGGGACACACTCTGCGAGCAATAGGTTGTA
rJMSF035D08- TGTTTGCCTTGTTGGCCTTCTTCCCTGTGAAGGGACACACTCTGCGAGCAATAGGTTGTA
____________________________________________________________
consensus TGTTTGCCTTGTTGGCCTTCTTCCCTGTGAAGGGACACACTCTGCGAGCAATAGGTTGTA
. : . : . : . : . : . :
rJMSF020B12- GAGAGGGACGGAGAGGAGCGGAGATTGGAGTTGGAATCTGACAGTGGTTGTACGAAATCT
JMFN005O07+ GAGAGGGACGGAGAGGAGCGGAGATTGGAGTTGGAATCTGACAGTGGTTGTACGAAATCT
JMFN002G04+ GAGAGGGACGGAGAGGAGCGGAGATTGGAGTTGGAATCTGACAGTGGTTGTACGAAATCT
JMSF020B12+ GAGAGGGACGGAGAGGAGCGGAGATTGGAGTTGGAATCTGACAGTGGTTGTACGAAATCT
rJMSF035D08- GAGAGGGACGGAGAGGAGCGGAGATTGGAGTTGGAATCTGACAGTGGTTGTACGAAATCT
____________________________________________________________
consensus GAGAGGGACGGAGAGGAGCGGAGATTGGAGTTGGAATCTGACAGTGGTTGTACGAAATCT
. : . : . : . : . : . :
rJMSF020B12- TGATACCACTCAACTGCGAAGCTATAAACCCTAGCTCCTCCTGCTGCTTCCTGATTGAGA
JMFN005O07+ TGATACCACTCAACTGCGAAGCTATAAACCCTAGCTCCTCCTGCTGCTTCCTGATTGAGA
JMFN002G04+ TGATACCACTCAACTGCGAAGCTATAAACCCTAGCTCCTCCTGCTGCTTCCTGATTGAGA
JMSF020B12+ TGATACCACTCAACTGCGAAGCTATAAACCCTAGCTCCTCCTGCTGCTTCCTGATTGAGA
rJMSF035D08- TGATACCACTCAACTGCGAAGCTATAAACCCTAGCTCCTCCTGCTGCTTCCTGATTGAGA
____________________________________________________________
consensus TGATACCACTCAACTGCGAAGCTATAAACCCTAGCTCCTCCTGCTGCTTCCTGATTGAGA
. : . : . : . : . : . :
rJMSF020B12- ATAGAGCCGCCGTCGATTTGGAGGCTGGCGTCTTGAAGTGGCGCCCCAACGCCGGTCCTC
JMFN005O07+ ATAGAGCCGCCGTCGATTTGGAGGCTGGCGTCTTGAAGTGGCGCCCCAACGCCGGTCCTC
JMFN002G04+ ATAGAGCCGCCGTCGATTTGGAGGCTGGCGTCTTGAAGTGGCGCCCCAACGCCGGTCCTC
JMSF020B12+ ATAGAGCCGCCGTCGATTTGGAGGCTGGCGTCTTGAAGTGGCGCCCCAACGCCGGTCCTC
rJMSF035D08- ATAGAGCCGCCGTCGATTTGGAGGCTGGCGTCTTGAAGTGGCGCCCCAACGCCGGTCCTC
____________________________________________________________
consensus ATAGAGCCGCCGTCGATTTGGAGGCTGGCGTCTTGAAGTGGCGCCCCAACGCCGGTCCTC
. : . : . : . : . : . :
rJMSF020B12- CCACGCTCACCATTGCCGTTGATGCTGCCATTTCAAACGTAACCACAAAACTTT
JMFN005O07+ CCACGCTCACCATTGCCGTTGATGCTGCCATTTCAAACGTAACCACAAAACTTT
JMFN002G04+ CCACGCTCACCATTGCCGTTGAT
JMSF020B12+ CCACGCTCACCATTGCCGTTGATGCTGCCATTTCAAACGTAACCACAAAACTTT
rJMSF035D08- CCACGCTCACCATTGCCGTTGATGCTGCCATTTCAAACGTAACCACAAAACTTTATCCCC
____________________________________________________________
consensus CCACGCTCACCATTGCCGTTGATGCTGCCATTTCAAACGTAACCACAAAACTTTATCCCC