Contig 008583:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044I06Sequence631005273 (4)ref|XP_008243317.1|2e-61PREDICTED: transcription factor bHLH140 [Prunus mume]582008583 (4)ref|XP_009789107.1|2e-93PREDICTED: transcription factor bHLH140 isoform X1 [Nicotiana sylvestris]
JMSF035B09Sequence673005273 (4)ref|XP_009628444.1|3e-95PREDICTED: transcription factor bHLH140 isoform X3 [Nicotiana tomentosiformis]753008583 (4)ref|XP_009789108.1|1e-118PREDICTED: transcription factor bHLH140 isoform X2 [Nicotiana sylvestris]
JMSF036D16Sequence691005273 (4)ref|XP_009628444.1|2e-98PREDICTED: transcription factor bHLH140 isoform X3 [Nicotiana tomentosiformis]783008583 (4)ref|XP_009789108.1|1e-120PREDICTED: transcription factor bHLH140 isoform X2 [Nicotiana sylvestris]
JMSF045H06Sequence692005273 (4)ref|XP_009628444.1|2e-98PREDICTED: transcription factor bHLH140 isoform X3 [Nicotiana tomentosiformis]841008583 (4)ref|XP_009789108.1|9e-134PREDICTED: transcription factor bHLH140 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF036D16+                                                                 AGAGG
rJMSF045H06+            TAAATCACAAGATCAACAGGGCAGAGGTACTCAGAATGGTGATCAGAAGGCTAAGAGG
                      ____________________________________________________________
consensus               TAAATCACAAGATCAACAGGGCAGAGGTACTCAGAATGGTGATCAGAAGGCTAAGAGG
 
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rJMSF036D16+          GAAGCTGCTTTTGAACCTGAGAG-AGCAAAAAATATAAAAGC-TTTCAAAAGAACTTGGA
rJMSF045H06+          GAAGCTGCTTTTGAACCTGAGAGAAGCAAAAAATATAAAAGCTTTTCAAAAGAACTTGGA
                      ____________________________________________________________
consensus             GAAGCTGCTTTTGAACCTGAGAGAAGCAAAAAATATAAAAGCTTTTCAAAAGAACTTGGA
 
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rJMSF036D16+          CCCAACACCAAGTGTCCTCTTGTTACAAGCAACAACCCTGAGAGAAAAGATGAAAAGCAT
rJMSF045H06+          CCCAACACCAAGTGTCCTCTTGTTACAAGCAACAACCCTGAGAGAAAAGATGAAAAGCAT
rJMSF035B09+                                     AGCAACAACCCTGAGAGAAAAGATGAAAAGCAT
                      ____________________________________________________________
consensus             CCCAACACCAAGTGTCCTCTTGTTACAAGCAACAACCCTGAGAGAAAAGATGAAAAGCAT
 
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rJMSF036D16+          ACAACCAAAACTTGGGGATCATGGGCACAAGCTCTTTATGACATCGCCATGCATCCTGAA
rJMSF045H06+          ACAACCAAAACTTGGGGATCATGGGCACAAGCTCTTTATGACATCGCCATGCATCCTGAA
rJMSF035B09+          ACAACCAAAACTTGGGGATCATGGGCACAAGCTCTTTATGACATCGCCATGCATCCTGAA
                      ____________________________________________________________
consensus             ACAACCAAAACTTGGGGATCATGGGCACAAGCTCTTTATGACATCGCCATGCATCCTGAA
 
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rJMSF036D16+          AAGCATAAGAATGATGTTTTAGACACATCACAGGATGTTGTTGTTCTGAACGATATGTAT
rJMSF045H06+          AAGCATAAGAATGATGTTTTAGACACATCACAGGATGTTGTTGTTCTGAACGATATGTAT
rJMSF035B09+          AAGCATAAGAATGATGTTTTAGACACATCACAGGATGTTGTTGTTCTGAACGATATGTAT
                      ____________________________________________________________
consensus             AAGCATAAGAATGATGTTTTAGACACATCACAGGATGTTGTTGTTCTGAACGATATGTAT
 
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rJMSF036D16+          CCAAAGGCACAAAAGCACCTGTTGGTGTTGGCACGAGTTGAAGGTCTTGATCGTCTGGCG
rJMSF045H06+          CCAAAGGCACAAAAGCACCTGTTGGTGTTGGCACGAGTTGAAGGTCTTGATCGTCTGGCG
rJMFF044I06+          CCAAAGGCACAAAAGCACCTGTTGGTGTTGGCACGAGTTGAAGGTCTTGATCGTCTGGCG
rJMSF035B09+          CCAAAGGCACAAAAGCACCTGTTGGTGTTGGCACGAGTTGAAGGTCTTGATCGTCTGGCG
                      ____________________________________________________________
consensus             CCAAAGGCACAAAAGCACCTGTTGGTGTTGGCACGAGTTGAAGGTCTTGATCGTCTGGCG
 
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rJMSF036D16+          GATGTTTCCGAGGAGCATCTCCCATTGCTTAAGACAATGCATGCAGTTGGACTGAAGTGG
rJMSF045H06+          GATGTTTCCGAGGAGCATCTCCCATTGCTTAAGACAATGCATGCAGTTGGACTGAAGTGG
rJMFF044I06+          GATGTTTCCGAGGAGCATCTCCCATTGCTTAAGACAATGCATGCAGTTGGACTGAAGTGG
rJMSF035B09+          GATGTTTCCGAGGAGCATCTCCCATTGCTTAAGACAATGCATGCAGTTGGACTGAAGTGG
                      ____________________________________________________________
consensus             GATGTTTCCGAGGAGCATCTCCCATTGCTTAAGACAATGCATGCAGTTGGACTGAAGTGG
 
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rJMSF036D16+          GCAGAAGAGTTTCTGAACGAAAATGAATCCTTAATATTCCGTCTTGGATACCATTCGGTC
rJMSF045H06+          GCAGGAGAGTTTCTGAACGAAAATGAATCCTTAATATTCCGTCTTGGATACCATTCGGTC
rJMFF044I06+          GCAGAAGAGTTTCTGAACGAAAATGAATCCTTAATATTCCGTCTTGGATACCATTCGGTC
rJMSF035B09+          GCAGAAGAGTTTCTGAACGAAAATGAATCCTTAATATTCCGTCTTGGATACCATTCGGTC
                      ____________________________________________________________
consensus             GCAGAAGAGTTTCTGAACGAAAATGAATCCTTAATATTCCGTCTTGGATACCATTCGGTC
 
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rJMSF036D16+          CCCTCAATGCGACAACTGCACCTTCATGTGATCAGCCAAGATTTCAACTCAAAGCATCTG
rJMSF045H06+          CCCTCAATGCGACAACTGCACCTTCATGTGATCAGCCAAGATTTCAACTCAAAGCATCTG
rJMFF044I06+          CCCTCAATGCGACAACTGCACCTTCATGTGATCAGCCAAGATTTCAACTCAAAGCATCTG
rJMSF035B09+          CCCTCAATGCGACAACTGCACCTTCATGTGATCAGCCAAGATTTCAACTCAAAGCATCTG
                      ____________________________________________________________
consensus             CCCTCAATGCGACAACTGCACCTTCATGTGATCAGCCAAGATTTCAACTCAAAGCATCTG
 
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rJMSF036D16+          AAGAACAAGAAGCATTGGAACTCATTCAATTCCCCCTTCTTCCGGGATTCAGTTGATGTG
rJMSF045H06+          AAGAACAAGAAGCATTGGAACTCATTCAATTCCCCCTTCTTCCGGGATTCAGTTGATGTG
rJMFF044I06+          AAGAACAAGAAGCATTGGAACTCATTCAATTCCCCCTTCTTCCGGGATTCAGTTGATGTG
rJMSF035B09+          AAGAACAAGAAGCATTGGAACTCATTCAATTCCCCCTTCTTCCGGGATTCAGTTGATGTG
                      ____________________________________________________________
consensus             AAGAACAAGAAGCATTGGAACTCATTCAATTCCCCCTTCTTCCGGGATTCAGTTGATGTG
 
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rJMSF036D16+          ATAGAGGAAGTCAGTCAAAATGGAAAAGCTACCTTGAATGATGATGAAAAGGTGCTCGCA
rJMSF045H06+          ATAGAGGAAGTCAGTCAAAATGGAAAAGCTACCTTGAATGATGATGAAAAGGTGCTCGCA
rJMFF044I06+          ATAGAGGAAGTCAGTCAAAATGGAAAAGCTACCTTGAATGATGATGAAAAGGTGCTCGCA
rJMSF035B09+          ATAGAGGAAGTCAGTCAAAATGGAAAAGCTACCTTGAATGATGATGAAAAGGTGCTCGCA
                      ____________________________________________________________
consensus             ATAGAGGAAGTCAGTCAAAATGGAAAAGCTACCTTGAATGATGATGAAAAGGTGCTCGCA
 
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rJMSF036D16+          ATGGAGTTGCGTTGCCATAGATGTCGTAGTGCTCATCCCAACATTCCCCGCCTCAAGGCA
rJMSF045H06+          ATGGAGTTGCGTTGCCATAGATGTCGTAGTGCTCATCCCAACATTCCCCGCCTCAAGGCA
rJMFF044I06+          ATGGAGTTGCGTTGCCATAGATGTCGTAGTGCTCATCCCAACATTCCCCGCCTCAAGGCA
rJMSF035B09+          ATGGAGTTGCGTTGCCATAGATGTCGTAGTGCTCATCCCAACATTCCCCGCCTCAAGGCA
                      ____________________________________________________________
consensus             ATGGAGTTGCGTTGCCATAGATGTCGTAGTGCTCATCCCAACATTCCCCGCCTCAAGGCA
 
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rJMSF036D16+          CATATTGGCTCATGTCAAGCCCCATTCCCTTCTTTCCTGCTCCAAAATGGTCGTCTAGTG
rJMSF045H06+          CATATTGGCTCATGTCAAGCCCCATTCCCTTCTTTCCTGCTCCAAAATGGTCGTCTAGTG
rJMFF044I06+          CATATTGGCTCATGTCAAGCCCCATTCCCTTCTTTCCTGCTCCAAAATGGTCGTCTAGTG
rJMSF035B09+          CATATTGGCTCATGTCAAGCCCCATTCCCTTCTTTCCTGCTCCAAAATGGTCGTCTAGTG
                      ____________________________________________________________
consensus             CATATTGGCTCATGTCAAGCCCCATTCCCTTCTTTCCTGCTCCAAAATGGTCGTCTAGTG
 
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rJMSF036D16+          TGCACACCAGGTAAGATGCAAATAGGTTCATGAATTGCTCCCTATCATAAT         
rJMSF045H06+          TGCACACCAGGTAAGATGCAAATAGGTTCATGAATTGCTCCCTATCATAAT         
rJMFF044I06+          TGCACACCAGGTAAGATGCAAATAGGTTCATGAATTGCTCCCTATCATAATCCCATGTCC
rJMSF035B09+          TGCACACCAGGTAAGATGCAAATAGGTTCATGAATTGCTCCCTATCATAATCCCATGTCC
                      ____________________________________________________________
consensus             TGCACACCAGGTAAGATGCAAATAGGTTCATGAATTGCTCCCTATCATAATCCCATGTCC
 
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rJMFF044I06+          ACTATGAATTCGAGTAACAGTAAAATATCTGTAGTTTTGGCC                  
rJMSF035B09+          ACTATGAATTCGAGTAACAGTAAAATATCTGTAGTTTTGGCCTTTGTCTCATCTCTATTG
                      ____________________________________________________________
consensus             ACTATGAATTCGAGTAACAGTAAAATATCTGTAGTTTTGGCCTTTGTCTCATCTCTATTG