Contig 008582:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017H13Sequence586011975 (3)ref|XP_009771774.1|3e-24PREDICTED: U-box domain-containing protein 35-like [Nicotiana sylvestris] ref|X741008582 (2)ref|XP_002510995.1|3e-85receptor protein kinase, putative [Ricinus communis] gb|EEF51597.1| receptor pro
JMSF034N11Sequence653011975 (3)ref|XP_009771774.1|6e-45PREDICTED: U-box domain-containing protein 35-like [Nicotiana sylvestris] ref|X724008582 (2)ref|XP_009588521.1|4e-80PREDICTED: U-box domain-containing protein 35-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF017H13+                                                 GGAAACGGGCCCCGTTGGAAC
rJMSF034N11+                                                                  GAAC
                      ____________________________________________________________
consensus                                                    GGAAACGGGCCCCGTTGGAAC
 
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rJMSF017H13+          GGTCTGCTATATAGATCCCGAGTATACAAGGACTGGCTTGATCTCTCCAAAGTCCGATGT
rJMSF034N11+          NGTCTGCTATATAGATCCCGAGTATACAAGGACTGGCTTGATCTCTCCAAAGTCCGATGT
                      ____________________________________________________________
consensus             GGTCTGCTATATAGATCCCGAGTATACAAGGACTGGCTTGATCTCTCCAAAGTCCGATGT
 
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rJMSF017H13+          TTATGCACTCGGAATGGTTATTCTGCAGCTGTTGACAGCAAAACAGGCCATCGGACTAAC
rJMSF034N11+          TTATGCACTCGGAATGGTTATTCTGCAGCTGTTGACAGCAAAACAGGCCATCGGACTAAC
                      ____________________________________________________________
consensus             TTATGCACTCGGAATGGTTATTCTGCAGCTGTTGACAGCAAAACAGGCCATCGGACTAAC
 
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rJMSF017H13+          ACACATTGTCGAAACTGCTATTGACATTGATACCCTCGAGGAGATACTTGACACCGAGGC
rJMSF034N11+          ACACATTGTCGAAACTGCTATTGACATTGATACCCTCGAGGAGATACTTGACACCGAGGC
                      ____________________________________________________________
consensus             ACACATTGTCGAAACTGCTATTGACATTGATACCCTCGAGGAGATACTTGACACCGAGGC
 
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rJMSF017H13+          TGGTAAATGGCCACGAGAAGAGACAAAGGAATTGGCAGTACTAGCTCTAAGATGCACAGA
rJMSF034N11+          TGGTAAATGGCCACGAGAAGAGACAAAGGAATTGGCAGTACTAGCTCTAAGATGCACAGA
                      ____________________________________________________________
consensus             TGGTAAATGGCCACGAGAAGAGACAAAGGAATTGGCAGTACTAGCTCTAAGATGCACAGA
 
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rJMSF017H13+          GCTTAAGCGAAAGGATAGACCCGACCTGAAGGATCATATACTCCCGGTTCTCGAGAAGCT
rJMSF034N11+          GCTTAAGCGAAAGGATAGACCCGACCTGAAGGATCATATACTCCCGGTTCTCGAGAAGCT
                      ____________________________________________________________
consensus             GCTTAAGCGAAAGGATAGACCCGACCTGAAGGATCATATACTCCCGGTTCTCGAGAAGCT
 
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rJMSF017H13+          GAAAGATGTAGCAAATCAAGCTAAAGAAATGGCATCAATCGCCCCGCCCCCTCCACCTAA
rJMSF034N11+          GAAAGATGTAGCAAATCAAGCTAAAGAAATGGCATCAATCGCCCCGCCCCCTCCACCTAA
                      ____________________________________________________________
consensus             GAAAGATGTAGCAAATCAAGCTAAAGAAATGGCATCAATCGCCCCGCCCCCTCCACCTAA
 
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rJMSF017H13+          CTACTTCATGTGCCCCATTCTCAAGGATGTAATGGAGGATCCTTGTGTTGCAGCCGATGG
rJMSF034N11+          CTACTTCATGTGCCCCATTCTCAAGGATGTAATGGAGGATCCTTGTGTTGCAGCCGATGG
                      ____________________________________________________________
consensus             CTACTTCATGTGCCCCATTCTCAAGGATGTAATGGAGGATCCTTGTGTTGCAGCCGATGG
 
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rJMSF017H13+          GTATACCTATGACCGGAAGGCGATAGAAAGTTGGCTAAACGAGAACGAGAATTCACCAAT
rJMSF034N11+          GTATACCTATGACCGGAAGGCGATAGAAAGTTGGCTAAACGAGAACGAGAATTCACCAAT
                      ____________________________________________________________
consensus             GTATACCTATGACCGGAAGGCGATAGAAAGTTGGCTAAACGAGAACGAGAATTCACCAAT
 
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rJMSF017H13+          GACAAACCTACCATTACCTCACAAGAACCTTCTACCAAACTACACGATTCTTTCTGCAAT
rJMSF034N11+          GACAAACCTACCATTACCTCACAAGAACCTTCTACCAAACTACACGATTCTTTCTGCAAT
                      ____________________________________________________________
consensus             GACAAACCTACCATTACCTCACAAGAACCTTCTACCAAACTACACGATTCTTTCTGCAAT
 
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rJMSF017H13+          TACAGTGTGGAAGTCTGGTAAGCAATAACTCAGATCTCTCAGATTGTCTATATAGGTGTC
rJMSF034N11+          TACAGTGTGGAAGTCTGGTAAGCAATAACTCAGATCTCTCAGATTGTCTATATAGGTGTC
                      ____________________________________________________________
consensus             TACAGTGTGGAAGTCTGGTAAGCAATAACTCAGATCTCTCAGATTGTCTATATAGGTGTC
 
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rJMSF017H13+          TCTTCTAGTTCTAGATAGTGACTTTTAGGGACTGCTGTGCCTTGCAGACATTTGTTTTTG
rJMSF034N11+          TCTTCTAGTTCTAGATAGTGACTTTTAGGGACTGCTGTGCCTTGCAGACATTTGTTTTTG
                      ____________________________________________________________
consensus             TCTTCTAGTTCTAGATAGTGACTTTTAGGGACTGCTGTGCCTTGCAGACATTTGTTTTTG
 
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rJMSF017H13+          CCATTAGATTTTCAGATCCATCAATGTCAAATGCTGATGAACTGTAAAGTTGAC      
rJMSF034N11+          CCATTAGATTTTCAGATCCATCAATGTCAAATGCTGATGAACTGTAAAGTTGACCAGATT
                      ____________________________________________________________
consensus             CCATTAGATTTTCAGATCCATCAATGTCAAATGCTGATGAACTGTAAAGTTGACCAGATT