| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF005E09 | Sequence | 466 | 006479 (3) | ref|XP_007027602.1| | 3e-86 | Nucleotide-diphospho-sugar transferases superfamily protein isoform 3 [Theobrom | 527 | 008580 (3) | ref|XP_007027600.1| | 3e-13 | Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobrom |
| JMSF018G24 | Sequence | 276 | 006479 (3) | gb|EYU41550.1| | 1e-15 | hypothetical protein MIMGU_mgv1a004346mg [Erythranthe guttata] | 773 | 008580 (3) | gb|KJB16698.1| | 3e-53 | hypothetical protein B456_002G243400 [Gossypium raimondii] gb|KJB16699.1| hypoth |
| JMSF034B20 | Sequence | 691 | 006479 (3) | ref|XP_007027602.1| | 1e-105 | Nucleotide-diphospho-sugar transferases superfamily protein isoform 3 [Theobrom | 691 | 008580 (3) | ref|XP_007027600.1| | 2e-25 | Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobrom |
This contig is upended
. : . : . : . : . : . :
rJMSF018G24+ ACTATCCTCCATAGNGTCGGCACTCCGAGGTCATTTCACTTGTTGTCGTT
____________________________________________________________
consensus ACTATCCTCCATAGNGTCGGCACTCCGAGGTCATTTCACTTGTTGTCGTT
. : . : . : . : . : . :
rJMSF018G24+ CTGGCTGCTGTTTGAGAATGTTATGGCACTACATCGGACAAAGGGAACCTTAATAGGATT
____________________________________________________________
consensus CTGGCTGCTGTTTGAGAATGTTATGGCACTACATCGGACAAAGGGAACCTTAATAGGATT
. : . : . : . : . : . :
rJMSF018G24+ GATGGAGGTGGGTAGGGTGAACGAGTGGATTGTGACAGAGAAATTAGGCGATGCTTTCAA
rJMSF034B20+ GATTGTGACAGAGAAATTAGGCGATGCTTTCAA
____________________________________________________________
consensus GATGGAGGTGGGTAGGGTGAACGAGTGGATTGTGACAGAGAAATTAGGCGATGCTTTCAA
. : . : . : . : . : . :
rJMSF018G24+ ATTAAAATCGGCTGCACAAGCCATTAAAACACCACGTTTCAAGATTGCAGAAAGAGTGCT
rJMSF034B20+ ATTAAAATCGGCTGCACAAGCCATTAAAACACCACGTTTCAAGATTGCAGAAAGAGTGCT
____________________________________________________________
consensus ATTAAAATCGGCTGCACAAGCCATTAAAACACCACGTTTCAAGATTGCAGAAAGAGTGCT
. : . : . : . : . : . :
rJMSF005E09+ CTATGTTTTGGGGCATATCTCTTGTTTTGCGGCTGCTATGACCTTATATT
rJMSF018G24+ TGTTTTAGAGCTATGTTTTGGGGCATATCTCTTGTTTTGCGGCTGCTATGACCTTATATT
rJMSF034B20+ TGTTTTAGAGCTATGTTTTGGGGCATATCTCTTGTTTTGCGGCTGCTATGACCTTATATT
____________________________________________________________
consensus TGTTTTAGAGCTATGTTTTGGGGCATATCTCTTGTTTTGCGGCTGCTATGACCTTATATT
. : . : . : . : . : . :
rJMSF005E09+ TGGGAAGCAATTGTATTATTGGTACATCATACTTCAAGCCATCGCATTCTTTATAATCGG
rJMSF018G24+ TGGGAAGCAATTGTATTATTGGTACATCATACTTCAAGCCATCGCATTCTTTATAATCGG
rJMSF034B20+ TGGGAAGCAATTGTATTATTGGTACATCATACTTCAAGCCATCGCATTCTTTATAATCGG
____________________________________________________________
consensus TGGGAAGCAATTGTATTATTGGTACATCATACTTCAAGCCATCGCATTCTTTATAATCGG
. : . : . : . : . : . :
rJMSF005E09+ ATTCGGATATGTGGGCACCATTGTTCCCTCCTAGCTCCTAGCTCCTAGCTCCTAGCTCCA
rJMSF018G24+ ATTCGGATATGTGGGCACCATTGTTCCCTCCTAGCTCCTAGCTCCTAGCTCCTAGCTCCA
rJMSF034B20+ ATTCGGATATGTGGGCACCATTGTTCCCTCCTAGCTCCTAGCTCCTAGCTCCTAGCTCCA
____________________________________________________________
consensus ATTCGGATATGTGGGCACCATTGTTCCCTCCTAGCTCCTAGCTCCTAGCTCCTAGCTCCA
. : . : . : . : . : . :
rJMSF005E09+ ACCAAACACGCCCTTAGGCCACTCCTTGTTGGTTTCCAAAAACAATTTGGGTGCTTGCAT
rJMSF018G24+ ACCAAACACGCCCTTAGGCCACTCCTTGTTGGTTTCCAAAAACAATTTGGGTGCTTGCAT
rJMSF034B20+ ACCAAACACGCCCTTAGGCCACTCCTTGTTGGTTTCCAAAAACAATTTGGGTGCTTGCAT
____________________________________________________________
consensus ACCAAACACGCCCTTAGGCCACTCCTTGTTGGTTTCCAAAAACAATTTGGGTGCTTGCAT
. : . : . : . : . : . :
rJMSF005E09+ GCATGCATGGTGGATTCTTTATGGCTCAAATGGATTCATTCAATTGNGTAGAGATTTGAA
rJMSF018G24+ GCATGCATGGTGGATTCTTTATGGCTCAAATGGATTCATTCAATTGTGTAGAGATTTGAA
rJMSF034B20+ GCATGCATGGTGGATTCTTTATGGCTCAAATGGATTCATTCAATTGTGTAGAGATTTGAA
____________________________________________________________
consensus GCATGCATGGTGGATTCTTTATGGCTCAAATGGATTCATTCAATTGTGTAGAGATTTGAA
. : . : . : . : . : . :
rJMSF005E09+ TTCAAGATTAAAGGGAATATAGAGAGGGAAATTCAAGGAAAGATGGAATGTGTTCTTTTG
rJMSF018G24+ TTCAAGATTAAAGGGAATATAGAGAGGGAAATTCAAGGAAAGATGGAATGTGTTCTTTTG
rJMSF034B20+ TTCAAGATTAAAGGGAATATAGAGAGGGAAATTCAAGGAAAGATGGAATGTGTTCTTTTG
____________________________________________________________
consensus TTCAAGATTAAAGGGAATATAGAGAGGGAAATTCAAGGAAAGATGGAATGTGTTCTTTTG
. : . : . : . : . : . :
rJMSF005E09+ AGAAGGGAAAAGCAAAAAGGAAAGTGGATGGAGAAATAGGACTCTCTTAGCTTGCTTCCA
rJMSF018G24+ AGAAGGGAAAAGCAAAAAGGAAAGTGGATGGAGAAATAGGACTCTCTTAGCTTGCTTCCA
rJMSF034B20+ AGAAGGGAAAAGCAAAAAGGAAAGTGGATGGAGA--TAGGACTCTCTTAGCTTGCTTCCA
____________________________________________________________
consensus AGAAGGGAAAAGCAAAAAGGAAAGTGGATGGAGAAATAGGACTCTCTTAGCTTGCTTCCA
. : . : . : . : . : . :
rJMSF005E09+ TGNCACATAGTTTGTGTAGTGATAGTAACTTAAATGCATCTCTTTCATTTGCCTNTTCCT
rJMSF018G24+ TGGCACATAGTTTGTGTAGTGATAGTAACTTAAATGCATCTCTTTCATTTGCCTTTTCCT
rJMSF034B20+ TGGCACATAGTTTGTGTAGTGATAGTAACTTAAATGCATCTCTTTCATTTGCCTTTTCCT
____________________________________________________________
consensus TGGCACATAGTTTGTGTAGTGATAGTAACTTAAATGCATCTCTTTCATTTGCCTTTTCCT
. : . : . : . : . : . :
rJMSF005E09+ TCTCTTTCGTATTCCAATAAAATTGTGTAAAATATTGTTGCNTAGCTCATTCATATT
rJMSF018G24+ TCTCTTTTGTATTCCAATAAAATTGTGTAAAATATTGTTGCTTAGCTCATTCATATT
rJMSF034B20+ TCTCTTTTGTATTCCAATAAAATTGTGTAAAATATTGTTGCTTAGCTCATTCATATTGTT
____________________________________________________________
consensus TCTCTTTTGTATTCCAATAAAATTGTGTAAAATATTGTTGCTTAGCTCATTCATATTGTT
. : . : . : . : . : . :
rJMSF034B20+ TTAATAGACTCAATAATGAAATCAAGTATAGTCGAGATAGAATTTATTGTCAACTTGTAT
____________________________________________________________
consensus TTAATAGACTCAATAATGAAATCAAGTATAGTCGAGATAGAATTTATTGTCAACTTGTAT