Contig 008578:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF016F18+                                     GACTCTGGTATGGCTTCAATTGCCTCTGCTACC
rJMSF033K16+                                          TGGTATGGCTTCAATTGCNTCTGCTACC
                      ____________________________________________________________
consensus                                        GACTCTGGTATGGCTTCAATTGCCTCTGCTACC
 
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rJMSF016F18+          CATTCATTTGTTCGATTTTGATGTGTTATCTCGCATATGTGAACCAATTGGAAGATTGGT
rJMSF003L20+            TTCANTTGTTCGATTTTGATGTGTTATCTCGCATATGTGAACCAATTGGAAGATTGGT
rJMSF033K16+          CATTCATTTGTTCGATTTTGATGTGTTATCTCGCATATGTGAACCAATTGGAAGATTGGT
                      ____________________________________________________________
consensus             CATTCATTTGTTCGATTTTGATGTGTTATCTCGCATATGTGAACCAATTGGAAGATTGGT
 
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rJMSF016F18+          AGAGTTTGGTTCGGCCACAATCAGACGAACTAGGCCAAATGTGGCAAAGGTGAGGATTGA
rJMSF003L20+          AGAGTTTGGTTCGGCCACAATCAGACGAACTAGGCCAAATGTGGCAAAGGTGAGGATTGA
rJMSF033K16+          AGAGTTTGGTTCGGCCACAATCAGACGAACTAGGCCAAATGTGGCAAAGGTGAGGATTGA
                      ____________________________________________________________
consensus             AGAGTTTGGTTCGGCCACAATCAGACGAACTAGGCCAAATGTGGCAAAGGTGAGGATTGA
 
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rJMSF016F18+          AATCGATGTGTATAAATCTGTTTTTGATCGCATTTGGTTTGAATTTGGTGAAGGAGGAGG
rJMSF003L20+          AATCGATGTGTATAAATCTGTTTTTGATCGCATTTGGATTGAATTTGGTGAAGGAGGAGG
rJMSF033K16+          AATCGATGTGTATAAATCTGTTTTTGATCGCATTTGGATTGAATTTGGTGAAGGAGGAGG
                      ____________________________________________________________
consensus             AATCGATGTGTATAAATCTGTTTTTGATCGCATTTGGATTGAATTTGGTGAAGGAGGAGG
 
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rJMSF016F18+          TTTGGATGGGTTTTGGCAGAAAGTAGAGGTGGAAAGACTACCGAATTTTTGTGTTGCATG
rJMSF003L20+          TTTGGATGGGTTTTGGCAGAAAGTAGAGGTGGAAAGACTACCGAATTTTTGTGTTGCATG
rJMSF033K16+          TTTGGATGGGTTTTGGCAGAAAGTAGAGGTGGAAAGACTACCGAATTTTTGTGTTGCATG
                      ____________________________________________________________
consensus             TTTGGATGGGTTTTGGCAGAAAGTAGAGGTGGAAAGACTACCGAATTTTTGTGTTGCATG
 
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rJMSF016F18+          TAGCCGGTTTGGTCACCTGGTGGGGAATTGCAAGCAAACTGAGGTGAGGTTAAGAAGAAG
rJMSF003L20+          TAGCCGGTTTGGTCACCTGGTGGGGAATTGCAAGCAAACTGAGGTGAGGTTAAGAAGAAG
rJMSF033K16+          TAGCCGGTTTGGTCACCTGGTGGGGAATTGCAAGCAAACTGAGGTGAGGTTAAGAAGAAG
                      ____________________________________________________________
consensus             TAGCCGGTTTGGTCACCTGGTGGGGAATTGCAAGCAAACTGAGGTGAGGTTAAGAAGAAG
 
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rJMSF016F18+          AGAAGAAAGGGGCACATCACTTACTTGTAAAAATGTCCCAATGACTCCTGGAGTTATAAG
rJMSF003L20+          AGAAGAAAGGGGCACATCACTTACTTGTAAAAATGTCCCAATGACTCCTGGAGTTATAAG
rJMSF033K16+          AGAAGAAAGGGGCACATCACTTACTTGTAAAAATGTCCCAATGACTCCTGGAGTTATAAG
                      ____________________________________________________________
consensus             AGAAGAAAGGGGCACATCACTTACTTGTAAAAATGTCCCAATGACTCCTGGAGTTATAAG
 
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rJMSF016F18+          AAAGGAAGATGGCCAAACACCTAATGTGGATGATTCAGGCCAAGGTACAGAAAAAGTAGA
rJMSF003L20+          AAAGGAAGATGGCCAAACACCTAATGTGGATGATTCAGGCCAAGGTACAGAAAAAGTAGA
rJMSF033K16+          AAAGGAAGATGGCCAAACACCTAATGTGGATGATTCAGGCCAAGGTACAGAAAAAGTAGA
                      ____________________________________________________________
consensus             AAAGGAAGATGGCCAAACACCTAATGTGGATGATTCAGGCCAAGGTACAGAAAAAGTAGA
 
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rJMSF016F18+          AGCTGATATAAGCTTTAAGGACAATGAGATGAAGAGCCCTAATCAGAGGGGTCTTGTCAC
rJMSF003L20+          AGCTGATATAAGCTTTAAGGACAATGAGATGAAGAGCCCTAATCAGAGGGGTCTTGTCAC
rJMSF033K16+          AGCTGATATAAGCTTTAAGGACAATGAGATGAAGAGCCCTAATCAGAGGGGTCTTGTCAC
                      ____________________________________________________________
consensus             AGCTGATATAAGCTTTAAGGACAATGAGATGAAGAGCCCTAATCAGAGGGGTCTTGTCAC
 
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rJMSF016F18+          AGAAATTGTCAAACTAGCTTGAAGCAAACTGACCCTTGTGAAGCATAAATATATGTTGTA
rJMSF003L20+          AGAAATTGTCAAACTAGCTTGAAGCAAACTGACCCTTGTGAAGCATAAATATATGTTGTA
rJMSF033K16+          AGAAATTGTCAAACTAGCTTGAAGCAAACTGACCCTTGTGAAGCATAAATATATGTTGTA
                      ____________________________________________________________
consensus             AGAAATTGTCAAACTAGCTTGAAGCAAACTGACCCTTGTGAAGCATAAATATATGTTGTA
 
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rJMSF016F18+          AGTAGTTCTAAAAGGAAGCTGGCTCAGGCTGCTGAGTCTCCTGAGTTGAGGCCTAATCTG
rJMSF003L20+          AGTAGTTCTAAAAGGAAGCTGGCTCAGGCTGCTGAGTCTCCTGAGTTGAGGCCTAATCTG
rJMSF033K16+          AGTAGTTCTAAAAGGAAGCTGGCTCAGGCTGCTGAGTCTCCTGAGTTGAGGCCTAATCTG
                      ____________________________________________________________
consensus             AGTAGTTCTAAAAGGAAGCTGGCTCAGGCTGCTGAGTCTCCTGAGTTGAGGCCTAATCTG
 
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rJMSF016F18+          GAAGCAAAATTGGCATCATTAGCAAGTGAAGAATTTACCAGCATCATCATTCTCATATTA
rJMSF003L20+          GAAGCAAAATTGGCATCATTAGCAAGTGAAGAATTTACCAGCATCATCATTCTCATATTA
rJMSF033K16+          GAAGCAAAATTGGCATCATTAGCAAGTGAAGAATTTACCAGCATCATCATTCTCATATTA
                      ____________________________________________________________
consensus             GAAGCAAAATTGGCATCATTAGCAAGTGAAGAATTTACCAGCATCATCATTCTCATATTA
 
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rJMSF016F18+          TTGCTTCTATTAGCATTTTCTATTCTCTCTTTAGTAC                       
rJMSF003L20+          TTGCTTCTATTAGCATTTTCTATTCTCTCTTTAGTAC                       
rJMSF033K16+          TTGCTTCTATTAGCATTTTCTATTCTCTCTTTAGTACCTTCTCACAGATTGTTAGAAAAT
                      ____________________________________________________________
consensus             TTGCTTCTATTAGCATTTTCTATTCTCTCTTTAGTACCTTCTCACAGATTGTTAGAAAAT