Contig 008575:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018P09Sequence360002195 (5)629008575 (5)ref|XP_004250912.1|1e-70PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum lycopersicum]
JMSF020P06Sequence696002195 (5)ref|XP_009798644.1|3e-16PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Nicotiana sylvestris]722008575 (5)ref|XP_011090146.1|7e-87PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Sesamum indicum]
JMSF020P07Sequence684002195 (5)ref|XP_009798644.1|3e-16PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Nicotiana sylvestris]632008575 (5)ref|XP_004250912.1|4e-71PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum lycopersicum]
JMSF032K19Sequence678002195 (5)ref|XP_009798644.1|3e-16PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Nicotiana sylvestris]629008575 (5)ref|XP_004250912.1|9e-72PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum lycopersicum]
JMSF035P07Sequence628002195 (5)ref|XP_009798644.1|2e-16PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Nicotiana sylvestris]615008575 (5)ref|XP_004250912.1|8e-73PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum lycopersicum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020P06+                                                                   AGC
                      ____________________________________________________________
consensus                                                                      AGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020P06+          CTCAGCAACTGTACAACCATTTATGTTGCTCCNCCTTAACATTTGCCCGGATCCTGTTTG
                      ____________________________________________________________
consensus             CTCAGCAACTGTACAACCATTTATGTTGCTCCNCCTTAACATTTGCCCGGATCCTGTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+                                         GCACCAGAGACTCTTGAAGGGTACAGAAC
rJMSF020P07+                                         GCACCAGAGACTCTTGAAGGGTACAGAAC
rJMSF020P06+          TACAATAGAAGATGCTNTCCGGCTATTTTTTGCACCAGAGACTCTTGAAGGGTACAGAAC
rJMSF035P07+                                          CACCAGAGACTCTTGAAGGGTACAGAAC
rJMSF032K19+                                         GCACCAGAGACTCTTGAAGGGTACAGAAC
                      ____________________________________________________________
consensus             TACAATAGAAGATGCTNTCCGGCTATTTTTTGCACCAGAGACTCTTGAAGGGTACAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+          ATCAGCAGATGGGAAGGCTGAAGTGGTGAGTGCGAGCAAGTCTGTCAAGATTNTAGAGCT
rJMSF020P07+          ATCAGCAGATGGGAAGGCTGAAGTGGTGAGTGCGAGCAAGTCTGTCAAGATTNTAGAGCT
rJMSF020P06+          ATCAGCAGATGGGAAGGCTGAAGTGGTGAGTGCGANCAANTNTGTCAAGATTCTAGAGCT
rJMSF035P07+          ATCAGCAGATGGGAAGGCTGAAGTGGTGAGTGCGAGCAAGTCTGTCAAGATTCTAGAGCT
rJMSF032K19+          ATCAGCAGATGGGAAGGCTGAAGTGGTGAGTGCGAGCAAGTCTGTCAAGATTCTAGAGCT
                      ____________________________________________________________
consensus             ATCAGCAGATGGGAAGGCTGAAGTGGTGAGTGCGAGCAAGTCTGTCAAGATTCTAGAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+          TTNTGATATTATGGTGTTGCATTTGATGCGCTTCAGTTATGGAAGTGAAGGAAGTACCAA
rJMSF020P07+          TTNTGATATTATGGNGTTGCATTTGATGCGCTTCAGTTATGGAAGTGAAGGAAGTACCAA
rJMSF020P06+          TTCTGATATTATGGTGTTGCATTTGATGCGCTTCAGTTATGGAAGTGAAGGAAGTNCCAA
rJMSF035P07+          TTCTGATATTATGGTGTTGCATTTGATGCGCTTCAGTTATGGAAGTGAAGGAAGTACCAA
rJMSF032K19+          TTNTGATATTATGGTGTTGCATTTGATGCGCTTCAGTTATGGAAGTGAAGGAAGTACCAA
                      ____________________________________________________________
consensus             TTCTGATATTATGGTGTTGCATTTGATGCGCTTCAGTTATGGAAGTGAAGGAAGTACCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+          GTTGCACAAACCCGTACACTTCCCTTTGGAGCTTGTGTTTGGTCGGGATTTGCTCGTCTC
rJMSF020P07+          GTTGCACAAACCCGTACACTTCCCTTTGGAGCTTGTGTTTGGTCGGGATTTGCTCGTCTC
rJMSF020P06+          GTTGCNCAAACCCGTACACTTCCCTTTGGAGCTTGTGTTTGGTCGGGATTTGCTCGTCTC
rJMSF035P07+          GTTGCACAAACCCGTACACTTCCCTTTGGAGCTTGTGTTTGGTCGGGATTTGCTCGTCTC
rJMSF032K19+          GTTGCACAAACCCGTACACTTCCCTTTGGAGCTTGTGTTTGGTCGGGATTTGCTCGTCTC
                      ____________________________________________________________
consensus             GTTGCACAAACCCGTACACTTCCCTTTGGAGCTTGTGTTTGGTCGGGATTTGCTCGTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+          TCCCCATTCCGAGGGTCGGAGGTATGAGCTTGTTGCGACTATAACGCATCATGGGATGGA
rJMSF020P07+          TCCCCATTCCGAGGGTCGGAGGTATGAGCTTGTTGCGACTATAACGCATCATGGGATGGA
rJMSF020P06+          TCCCCATTCCGAGGGTCGGAGGTATGAGCTTGTTGCGACTATAACGCATCATGGGATGGA
rJMSF035P07+          TCCCCATTCCGAGGGTCGGAGGTATGAGCTTGTTGCGACTATAACGCATCATGGGATGGA
rJMSF032K19+          TCCCCATTCCGAGGGTNGGAGGTATGAGCTTGTTGCGACTATAACGCATCATGGGATGGA
                      ____________________________________________________________
consensus             TCCCCATTCCGAGGGTCGGAGGTATGAGCTTGTTGCGACTATAACGCATCATGGGATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+          CCCTTTTAAGGGTCNCTATACAGCTGATGCCCGCCATCCGAGTGGCAAGNGGCTGCGCTA
rJMSF020P07+          CCCTTTTAAGGGTCNCTATACAGCTGATGCCCGCCATCCGAGTGGCAAGTGGCTGCGCTA
rJMSF020P06+          CCCTTTTAAGGGTCNCTATACAGCTGATGCCCGCCATCCGAGTGGCAAGTGGCTGCGCTA
rJMSF035P07+          CCCTTTTAAGGGTCNCTATACAGCTGATGCCCGCCATCCGAGTGGCAAGTGGCTGCGCTA
rJMSF032K19+          CCCTTTTAAGGGTCNCTATACAGCTGATGCCCGCCATCCGAGTGGCAAGTGGCTGCGCTA
                      ____________________________________________________________
consensus             CCCTTTTAAGGGTCNCTATACAGCTGATGCCCGCCATCCGAGTGGCAAGTGGCTGCGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+          TGATGATGCTGCCGTCACCCCAATCCCAACAAGCAAAGTGCTGCATGAGCAAGCTTACAT
rJMSF020P07+          TGATGATGCTGCCGTCACCCCAATCCCAACAAGCAAAGTGCTGCATGAGCAAGCTTACAT
rJMSF020P06+          TGATGATGCTGCCGTCACCCCAATNCCAACAAGCAAAGTGNTGCATGAGCAAGCTTACAT
rJMSF035P07+          TGATGATGCTGCCGTCACCCCAATCCCAACAAGCAAAGTGCTGCATGAGCAAGCTTACAT
rJMSF032K19+          TGATGATGCTGCCGTCACCCCAATCCCAACAAGCAAAGTGCTGCATGAGCAAGCTTACAT
                      ____________________________________________________________
consensus             TGATGATGCTGCCGTCACCCCAATCCCAACAAGCAAAGTGCTGCATGAGCAAGCTTACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+          TNTNTTNTACAAACAGCTGTAATTGTACAATTCAGAATGAGAGTTGCGCTATTTTGCTGA
rJMSF020P07+          TNTTTTNTACAAACAGCTGTAATTGTACAATTCAGAATGAGAGTTGCGCTATTTTGCTGA
rJMSF020P06+          TNTTTTNTACAAACAGCTGTAATTGTACAATTCAGAATGAGAGTTGCGCTATTTTGNTGA
rJMSF035P07+          TNTTTTNTACAAACAGCTGTAATTGTACAATTCAGAATGAGAGTTGCGCTATTTTGCTGA
rJMSF032K19+          TNTTTTNTACAAACAGCTGTAATTGTACAATTCAGAATGAGAGTTGCGCTATTTTGCTGA
                      ____________________________________________________________
consensus             TNTTTTNTACAAACAGCTGTAATTGTACAATTCAGAATGAGAGTTGCGCTATTTTGCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+          TCCAGACTNTCAGCCATTTGCGGGCGGATATTTCTTTGTACATGTATTACNGTAGAAGCA
rJMSF020P07+          TCCAGACTNTCAGCCATTTGCGGGCGGATATTTCTTTGTACATGTATTACNGTAGAAGCA
rJMSF020P06+          TCCAGACTTTCAGCCATTTGCGGGCGGATATTTCTTTGTACATGTATTACNGTAGAAGCA
rJMSF035P07+          TCCAGACTNTCAGCCATTTGCGGGCGGATATTTCTTTGTACATGTATTACNGTAGAAGCA
rJMSF032K19+          TCCAGACTNTCAGCCATTTGCGGGCGGATATTTCTTTGTACATGTATTACNGTAGAAGCA
                      ____________________________________________________________
consensus             TCCAGACTTTCAGCCATTTGCGGGCGGATATTTCTTTGTACATGTATTACNGTAGAAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+          AAAATAGGTGACAGATNTCNCNGAAGGTAACCATATAGGAAGGATTANGTCNGTCTTTTC
rJMSF020P07+          AAAATAGGNGACAGATNTCACAGAAGGTAACCATATAGGAAGGATTATGTCNGTCTTTTC
rJMSF020P06+          AAAATAGGNGACAGATNTCACNGAAGGTAACCATATAGGAAGGATTATGTCNGTCTTTTC
rJMSF035P07+          AAAATAGGNGACAGATCTCNCNGAAGGTAACCATATAGGAAGGATTATGTCNGTCTTTTC
rJMSF032K19+          AAAATAGGNGACAGATCTCNCNGAAGGTAACCATATAGGAAGGATTATGTCTGTCTTTTC
                      ____________________________________________________________
consensus             AAAATAGGTGACAGATCTCACAGAAGGTAACCATATAGGAAGGATTATGTCTGTCTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF018P09+          TCTTCTCTTTTTTTTTTTCTAAAAATTAAATTCCCTGACTCACAACCT            
rJMSF020P07+          TCTTCTCTTTTTTTTTTTCTAAAAATTAAATTCCCTGACTCACAACCT            
rJMSF020P06+          TCTTCTCTTTTTTTTTTTCTAAAAATTAAATTCCCTGACTCACAACCT            
rJMSF035P07+          TCTTCTCTTTTTTTTTTTCTAAAAATTAAATTCCCTGACTCACAACC             
rJMSF032K19+          TCTTCTCTTTTTTTTTTTCTAAAAATTAAATTCCCTGACTCACAACCTTGAATGCCTCCT
                      ____________________________________________________________
consensus             TCTTCTCTTTTTTTTTTTCTAAAAATTAAATTCCCTGACTCACAACCTTGAATGCCTCCT