| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF032I23 | Sequence | 690 | 008573 (6) | ref|XP_003605686.1| | 5e-25 | Polyphenol oxidase [Medicago truncatula] | 696 | 008573 (6) | sp|Q06355.1|PPOB_SOLTU | 5e-17 | RecName: Full=Catechol oxidase B, chloroplastic; AltName: Full=Polyphenol oxida |
| JMSF034J22 | Sequence | 660 | 008573 (6) | ref|XP_003605686.1| | 2e-23 | Polyphenol oxidase [Medicago truncatula] | 645 | 008573 (6) | pir||S34786 | 2e-18 | catechol oxidase (EC 1.10.3.1) precursor - potato (fragment) |
| JMSF047I01 | Sequence | 660 | 008573 (6) | ref|XP_003605686.1| | 1e-23 | Polyphenol oxidase [Medicago truncatula] | 772 | 008573 (6) | sp|Q06355.1|PPOB_SOLTU | 9e-17 | RecName: Full=Catechol oxidase B, chloroplastic; AltName: Full=Polyphenol oxida |
This contig is upended
. : . : . : . : . : . :
JMSF034J22- GGGATGGATT
JMSF047I01- GGGATGGATT
JMSF032I23- GGAGCTAGGGATGGATT
____________________________________________________________
consensus GGAGCTAGGGATGGATT
. : . : . : . : . : . :
JMSF034J22- CACCTATTCTTCCATTTTCCGGTACTATTACTGATTATAAGCTCCCCACATTTTCCCGAC
JMSF047I01- CACCTATTCTTCCATTTTCCGGTACTATTACTGATTATAAGCTCCCCACATTTTCCCGAC
JMSF032I23- CACCTATTCTTCCATTTTCCGGTACTATTACTGATTATAAGCTCCCCACATTTTCCCGAC
____________________________________________________________
consensus CACCTATTCTTCCATTTTCCGGTACTATTACTGATTATAAGCTCCCCACATTTTCCCGAC
. : . : . : . : . : . :
JMSF034J22- ATATCGTCCGGCGGGAATATAGCGCCTTAGACGATGAGTCCAGGGAGAAGTTTGCGACCG
JMSF047I01- ATATCGTCCGGCGGGAATATAGCGCCTTAGACGATGAGTCCAGGGAGAAGTTTGCGACCG
JMSF032I23- ATATCGTCCGGCGGGAATATAGCGCCTTAGACGATGAGTCCAGGGAGAAGTTTGCGACCG
____________________________________________________________
consensus ATATCGTCCGGCGGGAATATAGCGCCTTAGACGATGAGTCCAGGGAGAAGTTTGCGACCG
. : . : . : . : . : . :
JMSF034J22- CCGTTAGAAAATTGAAGGAACGACGACTTCCCGTCGATCATGCGGATTATGATCTCTTTA
JMSF047I01- CCGTTAGAAAATTGAAGGAACGACGACTTCCCGTCGATCATGCGGATTATGATCTCTTTA
JMSF032I23- CCGTTAGAAAATTGAAGGAACGACGACTTCCCGTCGATCATGCGGATTATGATCTCTTTA
____________________________________________________________
consensus CCGTTAGAAAATTGAAGGAACGACGACTTCCCGTCGATCATGCGGATTATGATCTCTTTA
. : . : . : . : . : . :
JMSF034J22- AAAGTTTGCACCAAGCTGGATTCTCCCCTGGAGCACACTTCGGAGCGAGCTTCGTTGCTT
JMSF047I01- AAAGTTTGCACCAAGCTGGATTCTCCCCTGGAGCACACTTCGGAGCGAGCTTCGTTGCTT
JMSF032I23- AAAGTTTGCACCAAGCTGGATTCTCCCCTGGAGCACACTTCGGAGCGAGCTTCGTTGCTT
____________________________________________________________
consensus AAAGTTTGCACCAAGCTGGATTCTCCCCTGGAGCACACTTCGGAGCGAGCTTCGTTGCTT
. : . : . : . : . : . :
JMSF034J22- TCCACAGAATGTATTTGTTCATGTATGAAAAAATGCTTCAAAATGTGGCTGGAGATTCAA
JMSF047I01- TCCACAGAATGTATTTGTTCATGTATGAAAAAATGCTTCAAAATGTGGCTGGAGATTCAA
JMSF032I23- TCCACAGAATGTATTTGTTCATGTATGAAAAAATGCTTCAAAATGTGGCTGGAGATTCAA
____________________________________________________________
consensus TCCACAGAATGTATTTGTTCATGTATGAAAAAATGCTTCAAAATGTGGCTGGAGATTCAA
. : . : . : . : . : . :
JMSF034J22- CAATCTTCGTGCCTTACTGGAACAGCACGCTAGACAGCGATTTACCCGACCACGCTGCTT
JMSF047I01- CAATCTTCGTGCCTTACTGGAACAGCACGCTAGACAGCGATTTACCCGACCACGCTGCTT
JMSF032I23- CAATCTTCGTGCCTTACTGGAACAGCACGCTAGACAGCGATTTACCCGACCACGCTGCTT
____________________________________________________________
consensus CAATCTTCGTGCCTTACTGGAACAGCACGCTAGACAGCGATTTACCCGACCACGCTGCTT
. : . : . : . : . : . :
JMSF034J22- ATGCCCCGTTTTCTGACATGGTTTCCGGCATGGGGAACCTCAGCTCCGATGTGGACCGGC
JMSF047I01- ATGCCCCGTTTTCTGACATGGTTTCCGGCATGGGGAACCTCAGCTCCGATGTGGACCGGC
JMSF032I23- ATGCCCCGTTTTCTGACATGGTTTCCGGCATGGGGAACCTCAGCTCCGATGTGGACCGGC
____________________________________________________________
consensus ATGCCCCGTTTTCTGACATGGTTTCCGGCATGGGGAACCTCAGCTCCGATGTGGACCGGC
. : . : . : . : . : . :
JMSF034J22- GGTGGACCGTTTGCCAAACTCTGGGCGGCAAACGTGCGGGTATCACCGACCCAGAATTGC
JMSF047I01- GGTGGACCGTTTGCCAAACTCTGGGCGGCAAACGTGCGGGTATCACCGACCCAGAATGGC
JMSF032I23- GGTGGACCGTTTGCCAAACTCTGGGCGGCAAACGTGCGGGTATCACCGACCCAGAATGGC
____________________________________________________________
consensus GGTGGACCGTTTGCCAAACTCTGGGCGGCAAACGTGCGGGTATCACCGACCCAGAATGGC
. : . : . : . : . : . :
JMSF034J22- TGCAGACGTCGTTCGTGTTGTACGATGAAAACAATAATCTTGTCAGGATTAAGGTTGAAG
JMSF047I01- TGCAGACGTCGTTCGTGTTGTACGATGAAAACAATAATCTTGTCAGGATTAAGGTTGAAG
JMSF032I23- TGCAGACGTCGTTCGTGTTGTACGATGAAAACAATAATCTTGTCAGGATTAAGGTTGAAG
____________________________________________________________
consensus TGCAGACGTCGTTCGTGTTGTACGATGAAAACAATAATCTTGTCAGGATTAAGGTTGAAG
. : . : . : . : . : . :
JMSF034J22- ATTGTCTGGATAACGAGAAGCTTGGCTACAGTTATCAGGATTTGCCGAATCCAAGAAGCA
JMSF047I01- ATTGTCTGGATAACGAGAAGCTTGGCTACAGTTATCAGG
JMSF032I23- ATTGTCTGGATAACGAGAAGCTTGGCTACAGTTATCAGGATTTGCCGAATCCAAGAAGCA
rJMSF034J22+ CAGGATTTGCCGAATCCAAGAAGCA
rJMSF047I01+ CAGGATTTGCCGAATCCAAGAAGCA
rJMSF032I23+ TTGCCGAATCCAAGAAGCA
____________________________________________________________
consensus ATTGTCTGGATAACGAGAAGCTTGGCTACAGTTATCAGGATTTGCCGAATCCAAGAAGCA
. : . : . : . : . : . :
JMSF034J22- AGAAGTTCGAGCCGTTCACCGGAAAAAACCCGAGCAGCACCGGATCAAG
JMSF032I23- AGAAGTTCGAGCCGTTCACCGGAAAAAACCCGAGCAGCACCGGATCAAGTCTTCCCACAG
rJMSF034J22+ AGAAGTTCGAGCCGTTCACCGGAAAAAACCCGAGCAGCACCGGATCAAGTCTTCCCACAG
rJMSF047I01+ AGAAGTTCGAGCCGTTCACCGGAAAAAACCCGAGCAGCACCGGATCAAGTCTTCCCACAG
rJMSF032I23+ AGAAGTTCGAGCCGTTCACCGGAAAAAACCCGAGCAGCACCGGATCAAGTCTTCCCACAG
____________________________________________________________
consensus AGAAGTTCGAGCCGTTCACCGGAAAAAACCCGAGCAGCACCGGATCAAGTCTTCCCACAG
. : . : . : . : . : . :
JMSF032I23- CCACTGCCATCTT
rJMSF034J22+ CCACTGCCATCTTGCCGGCGACCTTAGACGAGACTGTCAAGTTTTACGTGACGAGGCCGC
rJMSF047I01+ CCACTGCCATCTTGCCGGCGACCTTAGACGAGACTGTCAAGTTTTACGTGACGAGGCCGC
rJMSF032I23+ CCACTGCCATCTTGCCGGCGACCTTAGACGAGACTGTCAAGTTTTACGTGACGAGGCCGC
____________________________________________________________
consensus CCACTGCCATCTTGCCGGCGACCTTAGACGAGACTGTCAAGTTTTACGTGACGAGGCCGC
. : . : . : . : . : . :
rJMSF034J22+ CGGCGACGACGTCGACGAAGAAGAAAGAGACGGAAGACAAGGAGACGGTGCTGAATTTCT
rJMSF047I01+ CGGCGACGACGTCGACGAAGAAGAAAGAGACGGAAGACAAGGAGACGGTGCTGAATTTCT
rJMSF032I23+ CGGCGACGACGTCGACGAAGAAGAAAGAGACGGAAGACAAGGAGACGGTGCTGAATTTCT
____________________________________________________________
consensus CGGCGACGACGTCGACGAAGAAGAAAGAGACGGAAGACAAGGAGACGGTGCTGAATTTCT
. : . : . : . : . : . :
rJMSF034J22+ ACGTGGAGTACGATGAGACAAAGAATATTAGGTTTGACGCGTACCTGAACGAGAACAAGG
rJMSF047I01+ ACGTGGAGTACGATGAGACAAAGAATATTAGGTTTGACGCGTACCTGAACGAGAACAAGG
rJMSF032I23+ ACGTGGAGTACGATGAGACAAAGAATATTAGGTTTGACGCGTACCTGAACGAGAACAAGG
____________________________________________________________
consensus ACGTGGAGTACGATGAGACAAAGAATATTAGGTTTGACGCGTACCTGAACGAGAACAAGG
. : . : . : . : . : . :
rJMSF034J22+ ACGCGAATTCGCTGGAGGTCGAAATGGCAGAGTTCGCCGGAAGTTTCATCAACTTCGCGT
rJMSF047I01+ ACGCGAATTCGCTGGAGGTCGAAATGGCAGAGTTCGCCGGAAGTTTCATCAACTTCGCGT
rJMSF032I23+ ACGCGAATTCGCTGGAGGTCGAAATGGCAGAGTTCGCCGGAAGTTTCATCAACTTCGCGT
____________________________________________________________
consensus ACGCGAATTCGCTGGAGGTCGAAATGGCAGAGTTCGCCGGAAGTTTCATCAACTTCGCGT
. : . : . : . : . : . :
rJMSF034J22+ GGCCGCGCCAGGGATCGGAGAAGACCAAGACGACGACTACTTGGAGCCTGGAAATCGCCC
rJMSF047I01+ GGCCGCGCCAGGGATCGGAGAAGACCAAGACGACGACTACTTGGAGCCTGGAAATCGCCC
rJMSF032I23+ GGCCGCGCCAGGGATCGGAGAAGACCAAGACGACGACTACTTGGAGCCTGGAAATCGCCC
____________________________________________________________
consensus GGCCGCGCCAGGGATCGGAGAAGACCAAGACGACGACTACTTGGAGCCTGGAAATCGCCC
. : . : . : . : . : . :
rJMSF034J22+ AAGTGCTTCAGGACTTGGCGCTCGGCGGCGAGAACAAGATTCCGGTGACTCTAGTGCCAA
rJMSF047I01+ AAGTGCTTCAGGACTTGGCGCTCGGCGGCGAGAACAAGATTCCGGTGACTCTAGTGCCAA
rJMSF032I23+ AAGTGCTTCAGGACTTGGCGCTCGGCGGCGAGAACAAGATTCCGGTGACTCTAGTGCCAA
____________________________________________________________
consensus AAGTGCTTCAGGACTTGGCGCTCGGCGGCGAGAACAAGATTCCGGTGACTCTAGTGCCAA
. : . : . : . : . : . :
rJMSF034J22+ AATGTGGCGGTGATTCGGTAACCGTCAAGAGTGTCGACATCACTGGTTAAGATTCACACT
rJMSF047I01+ AATGTGGCGGTGATTCGGTAACCGTCAAGAGTGTCGACATCACTGGTTAAGATTCACACT
rJMSF032I23+ AATGTGGCGGTGATTCGGTAACCGTCAAGAGTGTCGACATCACTGGTTAAGATTCACACT
____________________________________________________________
consensus AATGTGGCGGTGATTCGGTAACCGTCAAGAGTGTCGACATCACTGGTTAAGATTCACACT
. : . : . : . : . : . :
rJMSF034J22+ GCACTATGAACTCTGGTTCATGTGTTTGTGTTTTACGTTATGAAATATTATACGTGAAAC
rJMSF047I01+ GCACTATGAACTCTGGTTCATGTGTTTGTGTTTTACGTTATGAAATATTATACGTGAAAC
rJMSF032I23+ GCACTATGAACTCTGGTTCATGTGTTTGTGTTTTACGTTATGAAATATTATACGTGAAAC
____________________________________________________________
consensus GCACTATGAACTCTGGTTCATGTGTTTGTGTTTTACGTTATGAAATATTATACGTGAAAC
. : . : . : . : . : . :
rJMSF034J22+ AAATTAGTAATTGTGTCTTGTCTTGTGAAATTTTGTGCCTATGAACATAATATGTATCTA
rJMSF047I01+ AAATTAGTAATTGTGTCTTGTCTTGTGAAATTTTGTGCCTATGAACATAATATGTATCTA
rJMSF032I23+ AAATTAGTAATTGTGTCTTGTCTTGTGAAATTTTGTGCCTATGAACATAATATGTATCTA
____________________________________________________________
consensus AAATTAGTAATTGTGTCTTGTCTTGTGAAATTTTGTGCCTATGAACATAATATGTATCTA
. : . : . : . : . : . :
rJMSF034J22+ AATCATATT
rJMSF047I01+ AATCATATT
rJMSF032I23+ AATCATATTTGAAAAATAAGTAAATATATAATATATGTATATGTTTTATGTTATGATTTT
____________________________________________________________
consensus AATCATATTTGAAAAATAAGTAAATATATAATATATGTATATGTTTTATGTTATGATTTT