Contig 008572:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF021E16+                                                              GCTGGGTT
                      ____________________________________________________________
consensus                                                                 GCTGGGTT
 
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rJMSF021E16+          TTACAACCCATGCAATTGTGATGGGTATGCTCCAATTGTATCAATGTTAAAGAAGCATGA
rJMSF032E13+                                 GGTATGCTCCAATTGTATCAATGTTAANGAAGCATGA
                      ____________________________________________________________
consensus             TTACAACCCATGCAATTGTGATGGGTATGCTCCAATTGTATCAATGTTAAAGAAGCATGA
 
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rJMSF021E16+          AACTGCTCTGAACTTCACATGTGCTGAGTTGCGCACAGTTCACCAGAATGAGGGCTTTCC
rJMFF021L23+                        TCACATGTGCTGAGTTGCGCACAGTTCACCAGAATGAGGGCTTTCC
rJMSF032E13+          AACTGCTCTGAACTTCACATGTGCTGAGTTGCGCACAGTTCACCAGAATGAGGGCTTTCC
                      ____________________________________________________________
consensus             AACTGCTCTGAACTTCACATGTGCTGAGTTGCGCACAGTTCACCAGAATGAGGGCTTTCC
 
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rJMSF021E16+          AGAAGCAATGGCTGATCCTGAGGGGTTAGTTTGGCAGGTGTTAAACGCTGCATGGGATGT
rJMFF021L23+          AGAAGCAATGGCTGATCCTGAGGGGTTAGTTTGGCAGGTGTTAAACGCTGCATGGGATGT
rJMSF032E13+          AGAAGCAATGGCTGATCCTGAGGGGTTAGTTTGGCAGGTGTTAAACGCTGCATGGGATGT
                      ____________________________________________________________
consensus             AGAAGCAATGGCTGATCCTGAGGGGTTAGTTTGGCAGGTGTTAAACGCTGCATGGGATGT
 
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rJMSF021E16+          AAACATACCAGTTGCCAGTGAGAACGCACTTCCTTCATATGATAAAGCAGGTTATAAAAA
rJMFF021L23+          AAACATACCAGTTGCCAGTGAGAACGCACTTCCTTCATATGATAAAGCAGGTTATAAAAA
rJMSF032E13+          AAACATACCAGTTGCCAGTGAGAACGCACTTCCTTCATATGATAAAGCAGGTTATAAAAA
                      ____________________________________________________________
consensus             AAACATACCAGTTGCCAGTGAGAACGCACTTCCTTCATATGATAAAGCAGGTTATAAAAA
 
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rJMSF021E16+          GATTCTGGAAAATGCCAAGCCCTGGAATGATCCAGATGGAAGACATTTGTCCGCTTTTAC
rJMFF021L23+          GATTCTGGAAAATGCCAAGCCCTGGAATGATCCAGATGGAAGACATTTGTCCGCTTTTAC
rJMSF032E13+          GATTCTGGAAAATGCCAAGCCCTGGAATGATCCAGATGGAAGACATTTGTCCGCTTTTAC
                      ____________________________________________________________
consensus             GATTCTGGAAAATGCCAAGCCCTGGAATGATCCAGATGGAAGACATTTGTCCGCTTTTAC
 
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rJMSF021E16+          GTACCTCAGGCTAAACCCAATTCTCATAGAGTATCATAACTTCCTCGAGTNTGAGCGATT
rJMFF021L23+          GTACCTCAGGCTAAACCCAATTCTCATAGAGTATCATAACTTCCTCGAGTTTGAGCGATT
rJMSF032E13+          GTACCTCAGGCTAAACCCAATTCTCATAGAGTATCATAACTTCCTCGAGTTTGAGCGATT
                      ____________________________________________________________
consensus             GTACCTCAGGCTAAACCCAATTCTCATAGAGTATCATAACTTCCTCGAGTTTGAGCGATT
 
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rJMSF021E16+          TTTAAAGAGAATGCATGGGGAACCCTTTTCCAATTAGAAATTGTATCTGAAATTTAAGAG
rJMFF021L23+          TTTAAAGAGAATGCATGGGGAACCCTTTTCCAATTAGAAATTGTATCTGAAATTTAAGAG
rJMSF032E13+          TTTAAAGAGAATGCATGGGGAACCCTTTTCCAATTAGAAATTGTATCTGAAATTTAAGAG
                      ____________________________________________________________
consensus             TTTAAAGAGAATGCATGGGGAACCCTTTTCCAATTAGAAATTGTATCTGAAATTTAAGAG
 
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rJMSF021E16+          AGGCTATGAAAACTGAACTATTCGTATCAGAAGATTAATAAAACAAGAATGAGATCGTGC
rJMFF021L23+          AGGCTATGAAAACTGAACTATTCGTATCAGAAGATTAATAAAACAAGAATGAGATCGTGC
rJMSF032E13+          AGGCTATGAAAACTGAACTATTCGTATCAGAAGATTAATAAAACAAGAATGAGATCGTGC
                      ____________________________________________________________
consensus             AGGCTATGAAAACTGAACTATTCGTATCAGAAGATTAATAAAACAAGAATGAGATCGTGC
 
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rJMSF021E16+          CAGGTTAGCTCCAGTCCCTAGTGACAGATGAGTAGGTGTTTGGAAGAACTTTAACCTGAA
rJMFF021L23+          CAGGTTAGCTCCAGTCCCTAGTGACAGATGAGTAGGTGTTTGGAAGAACTTTAACCTGAA
rJMSF032E13+          CAGGTTAGCTCCAGTCCCTAGTGACAGATGAGTAGGTGTTTGGAAGAACTTTAACCTGAA
                      ____________________________________________________________
consensus             CAGGTTAGCTCCAGTCCCTAGTGACAGATGAGTAGGTGTTTGGAAGAACTTTAACCTGAA
 
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rJMSF021E16+          GTGAAAGATGTGCACAAGCCGAGAATTCAGCTAAAAAGGAAGTGAAGCATCCATTACCCT
rJMFF021L23+          GTGAAAGATGTGCACAAGCCGAGAATTCAGCTAAAAAGGAAGTGAAGCATCCATTACCCT
rJMSF032E13+          GTGAAAGATGTGCACAAGCCGAGAATTCAGCTAAAAAGGAAGTGAAGCATCCATTACCCT
                      ____________________________________________________________
consensus             GTGAAAGATGTGCACAAGCCGAGAATTCAGCTAAAAAGGAAGTGAAGCATCCATTACCCT
 
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rJMSF021E16+          TTTGCTTGGTTATATATCCTAACTTTCAAGAGTACAGAAACTATTAAAACAAATACATGA
rJMFF021L23+          TTTGCTTGGTTATATATCCTAACTTTCAAGAGTACAGAAACTATTAAAACAAATACATGA
rJMSF032E13+          TTTGCTTGGTTATATATCCTAACTTTCAAGAGTACAGAAACTATTAAAACAAATACATGA
                      ____________________________________________________________
consensus             TTTGCTTGGTTATATATCCTAACTTTCAAGAGTACAGAAACTATTAAAACAAATACATGA
 
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rJMSF021E16+          TTCTTTTGTTGTTGTGTTTGGCTATGGCTCAGACACTCTGCAATTGAAAGGTACNCTNTG
rJMFF021L23+          TTCTTTTGTTGTTGTGTTTGGCTATGGCTCAGACACTCTGCAATTGAAAGGTACACTTTG
rJMSF032E13+          TTCTTTTGTTTTTGTGTTTGGCTATGGCTCAGACACTCTGCAATTGAAAGGTACACTTTG
                      ____________________________________________________________
consensus             TTCTTTTGTTGTTGTGTTTGGCTATGGCTCAGACACTCTGCAATTGAAAGGTACACTTTG
 
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rJMSF021E16+          TATGATAATATATCTACAACTTTGTA-CTTGTGCAGCAAAAGCTGCANTCTAAATGCCAT
rJMFF021L23+          TATGATAATATATCTACAACTTTGTAC                                 
rJMSF032E13+          TATGATAATATATCTACAACTTTGTACCTTGTGCAGCAAAAGCTGCATTCTAAATGCCAT
                      ____________________________________________________________
consensus             TATGATAATATATCTACAACTTTGTACCTTGTGCAGCAAAAGCTGCATTCTAAATGCCAT