| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF009O23 | Sequence | 287 | 000835 (5) | ref|XP_009591171.1| | 55.8 | PREDICTED: uncharacterized protein LOC104088233 [Nicotiana tomentosiformis] | 742 | 008571 (3) | ref|XP_009611847.1| | 6e-123 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis] |
| JMSF015N24 | Sequence | 246 | 000835 (5) | ref|XP_009591171.1| | 56.2 | PREDICTED: uncharacterized protein LOC104088233 [Nicotiana tomentosiformis] | 751 | 008571 (3) | ref|XP_009611847.1| | 8e-125 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis] |
| JMSF032C20 | Sequence | 690 | 000835 (5) | ref|XP_009591171.1| | 254 | PREDICTED: uncharacterized protein LOC104088233 [Nicotiana tomentosiformis] | 700 | 008571 (3) | ref|NP_001266007.1| | 4e-112 | Hop-interacting protein THI135 [Solanum lycopersicum] gb|AEW69820.1| Hop-interac |
This contig is upended
. : . : . : . : . : . :
rJMSF015N24+ CCAATTATAGGGGCACGGACACAGCCTCCGAACATGTG
rJMSF009O23+ CGGACACAGCCTCCGAACATGTG
____________________________________________________________
consensus CCAATTATAGGGGCACGGACACAGCCTCCGAACATGTG
. : . : . : . : . : . :
rJMSF015N24+ CATCGTGACTGAGTTCATGTCTAGAGGAAGTGTTTACAACTTTTTGCACAAGCTAAGAGG
rJMSF009O23+ CATCGTGACTGAGTTCATGTCTAGAGGAAGTGTTTACAACTTTTTGCACAAGCTAAGAGG
rJMSF032C20+ CTAGAGGAAGTGTTTACAACTTTTTGCACAAGCTAAGAGG
____________________________________________________________
consensus CATCGTGACTGAGTTCATGTCTAGAGGAAGTGTTTACAACTTTTTGCACAAGCTAAGAGG
. : . : . : . : . : . :
rJMSF015N24+ TGCTTTTAAGCTTCCTAATCTACTCAAGGTTGCAACTGATGTTTCTAAAGGAATGTACTA
rJMSF009O23+ TGCTTTTAAGCTTCCTAATCTACTCAAGGTTGCAACTGATGTTTCTAAAGGAATGTACTA
rJMSF032C20+ TGCTTTTAAGCTTCCTAATCTACTCAAGGTTGCAACTGATGTTTCTAAAGGAATGTACTA
____________________________________________________________
consensus TGCTTTTAAGCTTCCTAATCTACTCAAGGTTGCAACTGATGTTTCTAAAGGAATGTACTA
. : . : . : . : . : . :
rJMSF015N24+ TCTCCACCAAAATAACATAATTCATCGTGACTTGAAGACTGCCAATCTTCTGATGGATGA
rJMSF009O23+ TCTCCACCAAAATAACATAATTCATCGTGACTTGAAGACTGCCAATCTTCTGATGGATGA
rJMSF032C20+ TCTCCACCAAAATAACATAATTCATCGTGACTTGAAGACTGCCAATCTTCTGATGGATGA
____________________________________________________________
consensus TCTCCACCAAAATAACATAATTCATCGTGACTTGAAGACTGCCAATCTTCTGATGGATGA
. : . : . : . : . : . :
rJMSF015N24+ GCACGGAGTTGTTAAGGTTGCTGATTTTGGGGTGGCTAGAGTGCAAGCTGTAACCGGAGT
rJMSF009O23+ GCACGGAGTTGTTAAGGTTGCTGATTTTGGGGTGGCTAGAGTGCAAGCTGTAACCGGAGT
rJMSF032C20+ GCACGGAGTTGTTAAGGTTGCTGATTTTGGGGTGGCTAGAGTGCAAGCTGTAACCGGAGT
____________________________________________________________
consensus GCACGGAGTTGTTAAGGTTGCTGATTTTGGGGTGGCTAGAGTGCAAGCTGTAACCGGAGT
. : . : . : . : . : . :
rJMSF015N24+ CATGACTGCAGAGACTGGAACATACCGATGGATGGCTCCTGAGGTAATTGAGCATAAACC
rJMSF009O23+ CATGACTGCAGAGACTGGAACATACCGATGGATGGCTCCTGAGGTAATTGAGCATAAACC
rJMSF032C20+ CATGACTGCAGAGACTGGAACATACCGATGGATGGCTCCTGAGGTAATTGAGCATAAACC
____________________________________________________________
consensus CATGACTGCAGAGACTGGAACATACCGATGGATGGCTCCTGAGGTAATTGAGCATAAACC
. : . : . : . : . : . :
rJMSF015N24+ ATATAATCACAAGGTTGATGTTTTCAGCTTTGGAATAGTGCTATGGGAACTTCTTACAGG
rJMSF009O23+ ATATAATCACAAGGTTGATGTTTTCAGCTTTGGAATAGTGCTATGGGAACTTCTTACAGG
rJMSF032C20+ ATATAATCACAAGGTTGATGTTTTCAGCTTTGGAATAGTGCTATGGGAACTTCTTACAGG
____________________________________________________________
consensus ATATAATCACAAGGTTGATGTTTTCAGCTTTGGAATAGTGCTATGGGAACTTCTTACAGG
. : . : . : . : . : . :
rJMSF015N24+ AGAAATTCCCTATGTCTTCTTAACACCTTTACAAGCTGCAATCGGTGTGGTGCAACAGGG
rJMSF009O23+ AGAAATTCCCTATGTCTTCTTAACACCTTTACAAGCTGCAATCGGTGTGGTGCAACAGGG
rJMSF032C20+ AGAAATTCCCTATGTCTTCTTAACACCTTTACAAGCTGCAATCGGTGTGGTGCAACAGGG
____________________________________________________________
consensus AGAAATTCCCTATGTCTTCTTAACACCTTTACAAGCTGCAATCGGTGTGGTGCAACAGGG
. : . : . : . : . : . :
rJMSF015N24+ TCTACGACCTAACATTCCTAAGAACACACATCCAAAACTAGCCGAACTGCTAGAGAATTG
rJMSF009O23+ TCTACGACCTAACATTCCTAAGAACACACATCCAAAACTAGCCGAACTGCTAGAGAATTG
rJMSF032C20+ TCTACGACCTAACATTCCTAAGAACACACATCCAAAACTAGCCGAACTGCTAGAGAATTG
____________________________________________________________
consensus TCTACGACCTAACATTCCTAAGAACACACATCCAAAACTAGCCGAACTGCTAGAGAATTG
. : . : . : . : . : . :
rJMSF015N24+ TTGGCACCAAGACCCAACTAAAAGGCCGGAATTCTCAGAAATTTTGGAGATTCTGAAACA
rJMSF009O23+ TTGGCACCAAGACCCAACTAAAAGGCCGGAATTCTCAGAAATTTTGGAGATTCTGAAACA
rJMSF032C20+ TTGGCACCAAGACCCAACTAAAAGGCCGGAATTCTCAGAAATTTTGGAGATTCTGAAACA
____________________________________________________________
consensus TTGGCACCAAGACCCAACTAAAAGGCCGGAATTCTCAGAAATTTTGGAGATTCTGAAACA
. : . : . : . : . : . :
rJMSF015N24+ AATTTCCGACGAGGTTGGAGATGACAAGCAAAAGGATACCAAATCAATCCGCGGTTTTTT
rJMSF009O23+ AATTTCCGACGAGGTTGGAGATGACAAGCAAAAGGATACCAAATCAATCCGCGGTTTTTT
rJMSF032C20+ AATTTCCGACGAGGTTGGAGATGACAAGCAAAAGGATACCAAATCAATCCGCGGTTTTTT
____________________________________________________________
consensus AATTTCCGACGAGGTTGGAGATGACAAGCAAAAGGATACCAAATCAATCCGCGGTTTTTT
. : . : . : . : . : . :
rJMSF015N24+ ACCCTCTGTAAACGGCCATCAATGAGATTTTAACTTAAGAAATGGAAATAAATCCCCCTA
rJMSF009O23+ ACCCTCTGTAAACGGCCATCAATGAGATTTTAACTTAAGAAATGGAAATAAATCCCCCTA
rJMSF032C20+ ACCCTCTGTAAACGGCCATCAATGAGATTTTAACTTAAGAAATGGAAATAAATCCCCCTA
____________________________________________________________
consensus ACCCTCTGTAAACGGCCATCAATGAGATTTTAACTTAAGAAATGGAAATAAATCCCCCTA
. : . : . : . : . : . :
rJMSF015N24+ AGTCATCTGGTGTAAGTCAGCTTTGTACAGGCACTATAAATTTATTCAACT
rJMSF009O23+ AGTCATCTGGTGTAAGTCAGCTTTGTACAGGCACTATAAATTTATTCAACT
rJMSF032C20+ AGTCATCTGGTGTAAGTCAGCTTTGTACAGGCACTATAAATTTATTCAACTTACTCCTTA
____________________________________________________________
consensus AGTCATCTGGTGTAAGTCAGCTTTGTACAGGCACTATAAATTTATTCAACTTACTCCTTA