Contig 008567:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+                              GTCTCCATATGAAGTGGCGGTGGTTCAGGGAGGGTAATGG
                      ____________________________________________________________
consensus                                 GTCTCCATATGAAGTGGCGGTGGTTCAGGGAGGGTAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          ATGAGCCGTCTGAAGTTTTTAAGCGGAACGCCATTAATAAGCTAGTGGAGAACTTGCATA
                      ____________________________________________________________
consensus             ATGAGCCGTCTGAAGTTTTTAAGCGGAACGCCATTAATAAGCTAGTGGAGAACTTGCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          GTGATATAGCAGGGTTGAGGAAGGCCAGGGAGGCAGAAATGGAAGGCATGTTCAATGCCC
                      ____________________________________________________________
consensus             GTGATATAGCAGGGTTGAGGAAGGCCAGGGAGGCAGAAATGGAAGGCATGTTCAATGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          AAGCTGCATTGAGGCAGCGAGAGGAGCAGTTGAACAGAGGTCTGAAGGAAATGCAGGATG
rJMSF031C15+            GCTGCANTGAGGCAGCGAGAGGAGCAGNTGAACAGAGGTCTGAAGGAAATGCAGGATG
                      ____________________________________________________________
consensus             AAGCTGCATTGAGGCAGCGAGAGGAGCAGTTGAACAGAGGTCTGAAGGAAATGCAGGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          AGAAAGAGGGATTGGAGCAGCAGTTGCAGATGGTTTTGATGAACACCGATTTACTGGAGG
rJMSF031C15+          AGAAAGAGGGATTGGAGCAGCAGTTGCAGATGGTTTTGATGAACACCGATTTACTGGAGG
                      ____________________________________________________________
consensus             AGAAAGAGGGATTGGAGCAGCAGTTGCAGATGGTTTTGATGAACACCGATTTACTGGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          GGTGGCTCAAGGACAATGAAGCTAAATTGAACAAGTTAGGGGTTGTGGATGTTAATGAGG
rJMSF031C15+          GGTGGCTCAAGGACAATGAAGCTAAATTGAACAAGTTAGGGGTTGTGGATGTTAATGAGG
                      ____________________________________________________________
consensus             GGTGGCTCAAGGACAATGAAGCTAAATTGAACAAGTTAGGGGTTGTGGATGTTAATGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          CTTTTGAGCCTTTTGATGTTCTTTCTAAACAGATGCTCGATTGCTCTGCCTCGGATTTGG
rJMSF031C15+          CTTTTGAGCCTTTTGATGTTCTTTCTAAACAGATGCTCGATTGCTCTGCCTCGGATTTGG
                      ____________________________________________________________
consensus             CTTTTGAGCCTTTTGATGTTCTTTCTAAACAGATGCTCGATTGCTCTGCCTCGGATTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          CTATAGAGGACGCCATTTATTCATTGGACAAGGCTGCACAGGATGGTGCAATACCATTTG
rJMSF031C15+          CTATAGAGGACGCCATTTATTCATTGGACAAGGCTGCACAGGATGGTGCAATACCATTTG
                      ____________________________________________________________
consensus             CTATAGAGGACGCCATTTATTCATTGGACAAGGCTGCACAGGATGGTGCAATACCATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          ATCAGTACTTGAGGAATGTGAGGCTGTTGTCTCGCGAACAGTTCTTTCATCGGGCTACAG
rJMSF031C15+          ATCAGTACTTGAGGAATGTGAGGCTGTTGTCTCGCGAACAGTTCTTTCATCGGGCTACAG
                      ____________________________________________________________
consensus             ATCAGTACTTGAGGAATGTGAGGCTGTTGTCTCGCGAACAGTTCTTTCATCGGGCTACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          CCTCAAAAGTTAGAGCTGCTCAGATGCAGGCCCATGTTTCTAATATGGCTTCCAAGGCTT
rJMSF031C15+          CCTCAAAAGTTAGAGCTGCTCAGATGCAGGCCCATGTTTCTAATATGGCTTCCAAGGCTT
                      ____________________________________________________________
consensus             CCTCAAAAGTTAGAGCTGCTCAGATGCAGGCCCATGTTTCTAATATGGCTTCCAAGGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          CACAATATGCTTTATGAAAGGCAAGCCATTTTACTGATATGCACCTTAATATCAGGCCAA
rJMSF031C15+          CACAATATGCTTTATGAAAGGCAAGCCATTTTACTGATATGCACCTTAATATCAGGCCAA
                      ____________________________________________________________
consensus             CACAATATGCTTTATGAAAGGCAAGCCATTTTACTGATATGCACCTTAATATCAGGCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031F15+          TCTCATATATTTCAAG                                            
rJMSF031C15+          TCTCATATATTTCAAGTGTTTACAGATTGTTGTGGATGGATCATTACGAGTTGTTCATGA
                      ____________________________________________________________
consensus             TCTCATATATTTCAAGTGTTTACAGATTGTTGTGGATGGATCATTACGAGTTGTTCATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031C15+          AATTGAGGATTTGTCTGAAGTTAGAAAATTGGCCTATTAGATGTCCAATTGAAGTTTAAC
                      ____________________________________________________________
consensus             AATTGAGGATTTGTCTGAAGTTAGAAAATTGGCCTATTAGATGTCCAATTGAAGTTTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031C15+          TTGCCACACCATTCTCATTATTGTTATTTCTTGTCATTAATACCTTAGTGGATTTGCTTA
                      ____________________________________________________________
consensus             TTGCCACACCATTCTCATTATTGTTATTTCTTGTCATTAATACCTTAGTGGATTTGCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031C15+          TGCATTTTATGTCTATTTGATGGTCACCTGTAGATCCAACACAATTTAGCTTGTTATTTG
                      ____________________________________________________________
consensus             TGCATTTTATGTCTATTTGATGGTCACCTGTAGATCCAACACAATTTAGCTTGTTATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031C15+          GGACTATATGTTTAGCTTATTATCTGGGATTATATGATTCAACATCACAGCTTGGCAACT
                      ____________________________________________________________
consensus             GGACTATATGTTTAGCTTATTATCTGGGATTATATGATTCAACATCACAGCTTGGCAACT