Contig 008563:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030E08Sequence629008563 (2)emb|CDP02855.1|9e-36unnamed protein product [Coffea canephora]757008563 (2)ref|XP_009791416.1|1e-71PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Nicoti

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-                       GGTCGAGCTTCAGTCTAAAACTCAGCTAAACCCTCACAAAAACCCTAA
                      ____________________________________________________________
consensus                         GGTCGAGCTTCAGTCTAAAACTCAGCTAAACCCTCACAAAAACCCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-           AAATGGCTCTAACAACCCCAATTCAAGTTCACCGATACCCACAGAGCCAGTACATCGACG
                      ____________________________________________________________
consensus             AAATGGCTCTAACAACCCCAATTCAAGTTCACCGATACCCACAGAGCCAGTACATCGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-           CTCTCCGATGGCTCCCCCGACTCTCCGCCTTCCACCGCCACATTATCCTTGCCGCCTTCG
                      ____________________________________________________________
consensus             CTCTCCGATGGCTCCCCCGACTCTCCGCCTTCCACCGCCACATTATCCTTGCCGCCTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-           ATTCCGACGCGTCTTCCCCCTCCCTCCAACTGCTCAGCCTCTCGCAATCGCCGCCGTCGG
                      ____________________________________________________________
consensus             ATTCCGACGCGTCTTCCCCCTCCCTCCAACTGCTCAGCCTCTCGCAATCGCCGCCGTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-           ATTCAGATCCGGAAATTCCCGAACTCAGTGTAGAATCATCCATTTCCACCCCTTCTCGGA
                      ____________________________________________________________
consensus             ATTCAGATCCGGAAATTCCCGAACTCAGTGTAGAATCATCCATTTCCACCCCTTCTCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-           TCTCTGCCCTGAAAACCTGCCGAACCTCCAATAAACCTCTCATTACTGCAGCCTCATCTT
                      ____________________________________________________________
consensus             TCTCTGCCCTGAAAACCTGCCGAACCTCCAATAAACCTCTCATTACTGCAGCCTCATCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-           CAGGTTCTCTCTCGATTCTCTCTGCGGATTTGATGAATGGGTCGTTAAATGTCGAGGCCT
                      ____________________________________________________________
consensus             CAGGTTCTCTCTCGATTCTCTCTGCGGATTTGATGAATGGGTCGTTAAATGTCGAGGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-           CGGTGACCGAAAGAGGGTTCCATTACGGACCCATCTTGGGGATTGATGTGAGTGAAAATG
                      ____________________________________________________________
consensus             CGGTGACCGAAAGAGGGTTCCATTACGGACCCATCTTGGGGATTGATGTGAGTGAAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-           GGTCCGAGGCTGTTAGTGTTGGGGAAGATGGGAGGGGTGAATTGGATCAACATTGGTGGT
                      ____________________________________________________________
consensus             GGTCCGAGGCTGTTAGTGTTGGGGAAGATGGGAGGGGTGAATTGGATCAACATTGGTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-           AGCATTGGAAAGACAGTGAATTTTCAGAAAGTTTTCGACAATAATGGGCTGGTTTCTTAT
rJMSF030E08+                                          TTTCGACAATAATGGGCTGGTTTCTTAT
                      ____________________________________________________________
consensus             AGCATTGGAAAGACAGTGAATTTTCAGAAAGTTTTCGACAATAATGGGCTGGTTTCTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030E08-           CAGGCGGTTAAGTGGGCTTCGCCAGTGGAGTTTGTGACTGG                   
rJMSF030E08+          CAGGCGGTTAAGTGGGCTTCGCCAGTGGAGTTTGTGACTGGTGGATTGGGTTATAGTCTT
                      ____________________________________________________________
consensus             CAGGCGGTTAAGTGGGCTTCGCCAGTGGAGTTTGTGACTGGTGGATTGGGTTATAGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          CAGTGGTGGGATCGGAGATCGCCTGGTGGACCTGTTTCTCAGTTTAAAGGAAATTGGAAT
                      ____________________________________________________________
consensus             CAGTGGTGGGATCGGAGATCGCCTGGTGGACCTGTTTCTCAGTTTAAAGGAAATTGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          CAAGGAATCATGCCTGGCATTGTGCATTCAATTGACATTCAACCATCAAGGAAGCATACT
                      ____________________________________________________________
consensus             CAAGGAATCATGCCTGGCATTGTGCATTCAATTGACATTCAACCATCAAGGAAGCATACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          TGTCTTGCAGGAGGTTCTTCTGGTACTGTATTTGTATGGGATCTTCGTAAGCCACAACAG
                      ____________________________________________________________
consensus             TGTCTTGCAGGAGGTTCTTCTGGTACTGTATTTGTATGGGATCTTCGTAAGCCACAACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          TCTATAGTTCTTACTGGTGTTGGGACCAGTGATTCAGCAGTCCAGACACTATCAGAAAGT
                      ____________________________________________________________
consensus             TCTATAGTTCTTACTGGTGTTGGGACCAGTGATTCAGCAGTCCAGACACTATCAGAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          GAGGTTTGGGAGGTTCAATATGACAACTATTCTCATTCTTCCAGCATTGCCCACACTTCT
                      ____________________________________________________________
consensus             GAGGTTTGGGAGGTTCAATATGACAACTATTCTCATTCTTCCAGCATTGCCCACACTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          GCCTCATCTTTTCTTCCTGCCATGATTTGCTCAGAGGATGCATCCTTGGTGTAATTGATC
                      ____________________________________________________________
consensus             GCCTCATCTTTTCTTCCTGCCATGATTTGCTCAGAGGATGCATCCTTGGTGTAATTGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          AAGGTGAAGAACCTATTGAACTTTTGGCTGAACCATGTGCCATTAACAGCTTTGACATTG
                      ____________________________________________________________
consensus             AAGGTGAAGAACCTATTGAACTTTTGGCTGAACCATGTGCCATTAACAGCTTTGACATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          ACAAGCAAAACCCCTCGGATGTGGTTTGTAGTTTGGAGTGGGAATCTGTGGCCATCTTGA
                      ____________________________________________________________
consensus             ACAAGCAAAACCCCTCGGATGTGGTTTGTAGTTTGGAGTGGGAATCTGTGGCCATCTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          CAAGGCCGTAGCTGCTACCGCCAGAACCAACTAGATGGTGCAACTCTCTTTTCTGTCTCA
                      ____________________________________________________________
consensus             CAAGGCCGTAGCTGCTACCGCCAGAACCAACTAGATGGTGCAACTCTCTTTTCTGTCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          TAATGTTTTATCAACTGTAAATTATTATAAGGTTGATAAAAGTGATGCAACCTTAAAACA
                      ____________________________________________________________
consensus             TAATGTTTTATCAACTGTAAATTATTATAAGGTTGATAAAAGTGATGCAACCTTAAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030E08+          TGCTAACACTGAAGAAAACCTTTATTTTAGTGACTGTGAGCATAGTTTAATGAATGATGA
                      ____________________________________________________________
consensus             TGCTAACACTGAAGAAAACCTTTATTTTAGTGACTGTGAGCATAGTTTAATGAATGATGA