| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008O08 | Sequence | 251 | 003566 (4) | ref|XP_009763010.1| | 8e-10 | PREDICTED: eukaryotic translation initiation factor 2A-like isoform X1 [Nicotia | 779 | 008562 (4) | ref|XP_011091567.1| | 1e-42 | PREDICTED: eukaryotic translation initiation factor 2A [Sesamum indicum] |
| JMSF030C19 | Sequence | 648 | 003566 (4) | ref|XP_009758482.1| | 7e-98 | PREDICTED: eukaryotic translation initiation factor 2A-like, partial [Nicotiana | 705 | 008562 (4) | ref|XP_011091567.1| | 9e-23 | PREDICTED: eukaryotic translation initiation factor 2A [Sesamum indicum] |
| JMSF042O02 | Sequence | 749 | 003566 (4) | ref|XP_009763010.1| | 5e-76 | PREDICTED: eukaryotic translation initiation factor 2A-like isoform X1 [Nicotia | 840 | 008562 (4) | emb|CDP10861.1| | 2e-44 | unnamed protein product [Coffea canephora] |
| JMSF047M14 | Sequence | 680 | 003566 (4) | ref|XP_009758482.1| | 7e-69 | PREDICTED: eukaryotic translation initiation factor 2A-like, partial [Nicotiana | 770 | 008562 (4) | ref|XP_011091567.1| | 9e-45 | PREDICTED: eukaryotic translation initiation factor 2A [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF042O02+ CTTNGGAAACTTACCCGGTGATAT
____________________________________________________________
consensus CTTNGGAAACTTACCCGGTGATAT
. : . : . : . : . : . :
rJMSF047M14+ AAGCTGAATTATCAGT
rJMSF042O02+ GGCATTNTGGGACTATGGTNGAAAAAAGGAACTTGCAACTACTAAAGCTGAATTATCAGT
rJMSF008O08+ ATCAGT
____________________________________________________________
consensus GGCATTNTGGGACTATGGTNGAAAAAAGGAACTTGCAACTACTAAAGCTGAATTATCAGT
. : . : . : . : . : . :
rJMSF047M14+ GACAAGTGAATGGTCTCCGGATGGACGTTA-TTTTATGACTGCCACAACAGCTCCTAGAC
rJMSF042O02+ GACAAGTGAATGGTCTCCGGATGGACGTTATTTTTATGACTGCCACAACAGCTCCTAGAC
rJMSF008O08+ GACAAGTGAATGGTCTCCGGATGGACGTTA-TTTTATGACTGCCACAACAGCTCCTAGAC
____________________________________________________________
consensus GACAAGTGAATGGTCTCCGGATGGACGTTA-TTTTATGACTGCCACAACAGCTCCTAGAC
. : . : . : . : . : . :
rJMSF047M14+ TCCAAGTTGACAATGGGATTAAGGTCTTTCATCACAATGGATCACTGTACTTCAAGAAGA
rJMSF042O02+ TCCAAGTTGACAATGGGATTAAGGTCTTTCATCACAATGGATCACTGTACTTCAAGAAGA
rJMSF008O08+ TCCAAGTTGACAATGGGATTAAGGTCTTTCATCACAATGGATCACTGTACTTCAAGAAGA
rJMSF030C19+ GGATTAAGGTCTTTCATCACAATGGATCACTGTACTTCAAGAAGA
____________________________________________________________
consensus TCCAAGTTGACAATGGGATTAAGGTCTTTCATCACAATGGATCACTGTACTTCAAGAAGA
. : . : . : . : . : . :
rJMSF047M14+ TGTTTGAAAAATTGTACCAGGCTGACTGGAAACCTGAGTCCCCAGATAAGTTTGGTGAAA
rJMSF042O02+ TGTTTGAAAAATTGTACCAGGCTGACTGGAAACCTGAGTCCCCAGATAAGTTTGGTGAAA
rJMSF008O08+ TGTTTGAAAAATTGTACCAGGCTGACTGGAAACCTGAGTCCCCAGATAAGTTTGGTGAAA
rJMSF030C19+ TGTTTGAAAAATTGTACCAGGCTGACTGGAAACCTGAGTCCCCAGATAAGTTTGGTGAAA
____________________________________________________________
consensus TGTTTGAAAAATTGTACCAGGCTGACTGGAAACCTGAGTCCCCAGATAAGTTTGGTGAAA
. : . : . : . : . : . :
rJMSF047M14+ TTTCAGAATTTTTGAAGGCTGTTGACTCCCTGAAAATTGACGAAACCAAAGTTCAAGGAC
rJMSF042O02+ TTTCAGAATTTTTGAAGGCTGTTGACTCCCTGAAAATTGACGAAACCAAAGTTCAAGGAC
rJMSF008O08+ TTTCAGAATTTTTGAAGGCTGTTGACTCCCTGAAAATTGACGAAACCAAAGTTCAAGGAC
rJMSF030C19+ TTTCAGAATTTTTGAAGGCTGTTGACTCCCTGAAAATTGACGAAACCAAAGTTCAAGGAC
____________________________________________________________
consensus TTTCAGAATTTTTGAAGGCTGTTGACTCCCTGAAAATTGACGAAACCAAAGTTCAAGGAC
. : . : . : . : . : . :
rJMSF047M14+ AAGGATCAAAAGCTTCCAAACCTGCCACAAAAACTACACCTGCCAATCCTCCTGCACAAA
rJMSF042O02+ AAGGATCAAAAGCTTCCAAACCTGCCACAAAAACTACACCTGCCAATCCTCCTGCACAAA
rJMSF008O08+ AAGGATCAAAAGCTTCCAAACCTGCCACAAAAACTACACCTGCCAATCCTCCTGCACAAA
rJMSF030C19+ AAGGATCAAAAGCTTCCAAACCTGCCACAAAAACTACACCTGCCAATCCTCCTGCACAAA
____________________________________________________________
consensus AAGGATCAAAAGCTTCCAAACCTGCCACAAAAACTACACCTGCCAATCCTCCTGCACAAA
. : . : . : . : . : . :
rJMSF047M14+ AGCCTGCTGCTTATCGTCCACCTCATGCCAAAGCTGCAGCTGCTGTCCAAGCAGAGTTAT
rJMSF042O02+ AGCCTGCTGCTTATCGTCCACCTCATGCCAAAGCTGCAGCTGCTGTCCAAGCAGAGTTAT
rJMSF008O08+ AGCCTGCTGCTTATCGTCCACCTCATGCCAAAGCTGCAGCTGCTGTCCAAGCAGAGTTAT
rJMSF030C19+ AGCCTGCTGCTTATCGTCCACCTCATGCCAAAGCTGCAGCTGCTGTCCAAGCAGAGTTAT
____________________________________________________________
consensus AGCCTGCTGCTTATCGTCCACCTCATGCCAAAGCTGCAGCTGCTGTCCAAGCAGAGTTAT
. : . : . : . : . : . :
rJMSF047M14+ TTGGTGGAAATCCTTCAGGAGAGCTGAGCAAGAATGCACTGAAAAACAAGAAAAAGAGGG
rJMSF042O02+ TTGGTGGAAATCCTTCAGGAGAGCTGAGCAAGAATGCACTGAAAAACAAGAAAAAGAGGG
rJMSF008O08+ TTGGTGGAAATCCTTCAGGAGAGCTGAGCAAGAATGCACTGAAAAACAAGAAAAAGAGGG
rJMSF030C19+ TTGGTGGAAATCCTTCAGGAGAGCTGAGCAAGAATGCACTGAAAAACAAGAAAAAGAGGG
____________________________________________________________
consensus TTGGTGGAAATCCTTCAGGAGAGCTGAGCAAGAATGCACTGAAAAACAAGAAAAAGAGGG
. : . : . : . : . : . :
rJMSF047M14+ AAAAACAAAAGGAGAAAAAAGCTGCTGAGGGTGCTATATAGTCAGTTCCAAGTCTACATC
rJMSF042O02+ AAAAACAAAAGGAGAAAAAAGCTGCTGAGGGTGCTATATAGTCAGTTCCAAGTCTACATC
rJMSF008O08+ AAAAACAAAAGGAGAAAAAAGCTGCTGAGGGTGCTATATAGTCAGTTCCAAGTCTACATC
rJMSF030C19+ AAAAACAAAAGGAGAAAAAAGCTGCTGAGGGTGCTATATAGTCAGTTCCAAGTCTACATC
____________________________________________________________
consensus AAAAACAAAAGGAGAAAAAAGCTGCTGAGGGTGCTATATAGTCAGTTCCAAGTCTACATC
. : . : . : . : . : . :
rJMSF047M14+ ATCTCAAGTCTCAAGTCTTGGTCTGCTCAGGCTTAGGGCATTAGGTATTTGAGCCTTCAA
rJMSF042O02+ ATCTCAAGTCTCAAGTCTTGGTCTGCTCAGGCTTAGGGCATTAGGTATTTGAGCCTTCAA
rJMSF008O08+ ATCTCAAGTCTCAAGTCTTGGTCTGCTCAGGCTTAGGGCATTAGGTATTTGAGCCTTCAA
rJMSF030C19+ ATCTCAAGTCTCAAGTCTTGGTCTGCTCAGGCTTAGGGCATTAGGTATTTGAGCCTTCAA
____________________________________________________________
consensus ATCTCAAGTCTCAAGTCTTGGTCTGCTCAGGCTTAGGGCATTAGGTATTTGAGCCTTCAA
. : . : . : . : . : . :
rJMSF047M14+ GCTATTCAATCATTCTGCCTATCCAAATGGCTGAAAATGTCGCCCTTGCTCGCACAATCA
rJMSF042O02+ GCTATTCAATCATTCTGCCTATCCAAATGGCTGAAAATGTCGCCCTTGCTCGCACAATCA
rJMSF008O08+ GCTATTCAATCATTCTGCCTATCCAAATGGCTGAAAATGTCGCCCTTGCTCGCACAATCA
rJMSF030C19+ GCTATTCAATCATTCTGCCTATCCAAATGGCTGAAAATGTCGCCCTTGCTCGCACAATCA
____________________________________________________________
consensus GCTATTCAATCATTCTGCCTATCCAAATGGCTGAAAATGTCGCCCTTGCTCGCACAATCA
. : . : . : . : . : . :
rJMSF047M14+ TCATCCACGTTGGACGCTATGCCTTCTGAAAGCTTTTAAGTTTCAAAAATTTTGTACTAA
rJMSF042O02+ TCATCCACGTTGGACGCTATGCCTTCTGAAAGCTTTTAAGTTTCAAAAATTTTGTACTAA
rJMSF008O08+ TCATCCACGTTGGACGCTATGCCTTCTGAAAGCTTTTAAGTTTCAAAAATTTTGTACTAA
rJMSF030C19+ TCATCCACGTTGGACGCTATGCCTTCTGAAAGCTTTTAAGTTTCAAAAATTTTGTACTAA
____________________________________________________________
consensus TCATCCACGTTGGACGCTATGCCTTCTGAAAGCTTTTAAGTTTCAAAAATTTTGTACTAA
. : . : . : . : . : . :
rJMSF047M14+ TGCAAAACTTTGGTCAACAATTATTTTCCATGTTCTGAAAGCTTTTAAGTTTCAAAAATT
rJMSF042O02+ TGCAAAACTTTGGTCAACAATTATTTTCCATGTTCTGAAAGCTTTTAAGTTTCAAAAATT
rJMSF008O08+ TGCAAAACTTTGGTCAACAATTATTTTCCATGTTCTGAAAGCTTTTAAGTTTCAAAAATT
rJMSF030C19+ TGCAAAACTTTGGTCAACAATTATTTTCCATGTTCTGAAAGCTTTTAAGTTTCAAAAATT
____________________________________________________________
consensus TGCAAAACTTTGGTCAACAATTATTTTCCATGTTCTGAAAGCTTTTAAGTTTCAAAAATT
. : . : . : . : . : . :
rJMSF047M14+ TTGTACTATTGCAAAACTTTGGTCAAC
rJMSF042O02+ TTGTACTATTGCAAAACTTTGGTCAAC
rJMSF008O08+ TTGTACTATTGCAAAACTTTGGTCAACAATTATTTTCCATGTTCAGAGGCCTCT
rJMSF030C19+ TTGTACTATTGCAAAACTTTGGTCAACAATTATTTTCCATGTTCAGAGGCCTCTTGTGCT
____________________________________________________________
consensus TTGTACTATTGCAAAACTTTGGTCAACAATTATTTTCCATGTTCAGAGGCCTCTTGTGCT