Contig 008561:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030A19Sequence546003187 (3)ref|XP_006368926.1|6e-07hypothetical protein POPTR_0001s14920g [Populus trichocarpa] gb|ERP65495.1| hypo741008561 (2)gb|EYU33527.1|4e-35hypothetical protein MIMGU_mgv1a020659mg, partial [Erythranthe guttata]
JMSF047N03Sequence668003187 (3)ref|XP_009608055.1|9e-14PREDICTED: UPF0481 protein At3g47200-like [Nicotiana tomentosiformis]722008561 (2)gb|EYU33527.1|6e-35hypothetical protein MIMGU_mgv1a020659mg, partial [Erythranthe guttata]

Alignment

This contig is upended


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rJMSF047N03+                                                                 GGGAA
rJMSF030A19+                                                 TCCCAAGCCGCNAAANGGGAA
                      ____________________________________________________________
consensus                                                    TCCCAAGCCGCNAAANGGGAA
 
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rJMSF047N03+          TGAAGAAAATATGTGGCTAAAATTAAACCATATGAACAGTGCCACAGAGCTTAAAGAGGT
rJMSF030A19+          TGAAGAAAATATGGGGCTAAAATTAAACCATATGAACAGTGCCACAGAGCTTAAAGAGGT
                      ____________________________________________________________
consensus             TGAAGAAAATATGTGGCTAAAATTAAACCATATGAACAGTGCCACAGAGCTTAAAGAGGT
 
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rJMSF047N03+          TGGAGTTAGGTTTGACAAGATTGGACAAGTCTTCAATATGCCAAAGAAATATGAAAATAT
rJMSF030A19+          TGGAGTTAGGTTTGACAAGATTGGACAAGTCTTCAATATGCCAAAGAAATATGAAAATAT
                      ____________________________________________________________
consensus             TGGAGTTAGGTTTGACAAGATTGGACAAGTCTTCAATATGCCAAAGAAATATGAAAATAT
 
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rJMSF047N03+          TCCATCACCCGAATATAGTGGTGCCATTAGCTTGTTCGATATAACCTTTCATAATGGGGT
rJMSF030A19+          TCCATCACCCGAATATAGTGGTGCCATTAGCTTGTTCGATATAACCTTTCATAATGGGGT
                      ____________________________________________________________
consensus             TCCATCACCCGAATATAGTGGTGCCATTAGCTTGTTCGATATAACCTTTCATAATGGGGT
 
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rJMSF047N03+          AATGACCATACCTTGCTTTAAAGTTGACAACTTCACTGAACTATTCTTCCGAAACATGAT
rJMSF030A19+          AATGACCATACCTTGCTTTAAAGTTGACAACTTCACTGAACTATTCTTCCGAAACATGAT
                      ____________________________________________________________
consensus             AATGACCATACCTTGCTTTAAAGTTGACAACTTCACTGAACTATTCTTCCGAAACATGAT
 
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rJMSF047N03+          TGCCATGGAGCAGCGCTGCGACACACTAAACCCCAAATACTTCACCGATTATACGAGGTT
rJMSF030A19+          TGCCATGGAGCAGCGCTGCGACACACTAAACCCCAAATACTTCACCGATTATACGAGGTT
                      ____________________________________________________________
consensus             TGCCATGGAGCAGCGCTGCGACACACTAAACCCCAAATACTTCACCGATTATACGAGGTT
 
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rJMSF047N03+          AATGGACCACTTGTTGGACACCAAAAGAGACGTCACTTTGCTCCGCAAGAATGGGATCAT
rJMSF030A19+          AATGGACCACTTGTTGGACACCAAAAGAGACGTCACTTTGCTCCGCAAGAATGGGATCAT
                      ____________________________________________________________
consensus             AATGGACCACTTGTTGGACACCAAAAGAGACGTCACTTTGCTCCGCAAGAATGGGATCAT
 
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rJMSF047N03+          TCAAAACCTCTTAGATGAAGATAATAAGGTGGCCTATATTTTCAACAACCTCTTAGATGA
rJMSF030A19+          TCAAAACCTCTTAGATGAAGATAATAAGGTGGCCTATATTTTCAACAACCTCTTAGATGA
                      ____________________________________________________________
consensus             TCAAAACCTCTTAGATGAAGATAATAAGGTGGCCTATATTTTCAACAACCTCTTAGATGA
 
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rJMSF047N03+          AGATTATACTTGTTCCACCAACTTCTATTTTTCGTCGGTGTACAAGGATGTGGATGAACA
rJMSF030A19+          AGATTATACTTGTTCCACCAACTTCTATTTTTCGTCGGTGTACAAGGATGTGGATGAACA
                      ____________________________________________________________
consensus             AGATTATACTTGTTCCACCAACTTCTATTTTTCGTCGGTGTACAAGGATGTGGATGAACA
 
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rJMSF047N03+          TTCTCGCAATACCTATTGTTATTTATTGAGCCAACCAGGATCTTTTAACAGTGTATTGAT
rJMSF030A19+          TTCTCGCAATACCTATTGTTATTTATTGAGCCAACCAGGATCTTTTAACAGTGTATTGAT
                      ____________________________________________________________
consensus             TTCTCGCAATACCTATTGTTATTTATTGAGCCAACCAGGATCTTTTAACAGTGTATTGAT
 
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rJMSF047N03+          AGTGTTTGCTAGTATCTTCGTCGGTGTCCCCTTGTTGATTTTGGCAGTTAGAAAAAAATA
rJMSF030A19+          AGTGTTTGCTAGTATCTTCGTCGGTGTCCCCTTGTTGATTTTGGCAGTTAGAAAAAAATA
                      ____________________________________________________________
consensus             AGTGTTTGCTAGTATCTTCGTCGGTGTCCCCTTGTTGATTTTGGCAGTTAGAAAAAAATA
 
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rJMSF047N03+          TTATTAATAACCCTAGCTGCTTCCTCTACCCATTTCAATCCCTAATTAAAATATGTACGT
rJMSF030A19+          TTATTAATAACCCTAGCTGCTTCCTCTACCCATTTCAATCCCTAATTAAAATATGTACGT
                      ____________________________________________________________
consensus             TTATTAATAACCCTAGCTGCTTCCTCTACCCATTTCAATCCCTAATTAAAATATGTACGT
 
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rJMSF047N03+          ACTGTGTATTTAAGATGTAGTTTAACTAGTTTCATCATATCAATGTGTACTGC       
rJMSF030A19+          ACTGTGTATTTAAGATGTAGTTTAACTAGTTTCATCATATCAATGTGTACTGCATATATA
                      ____________________________________________________________
consensus             ACTGTGTATTTAAGATGTAGTTTAACTAGTTTCATCATATCAATGTGTACTGCATATATA