Contig 008560:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029J12Sequence692002300 (3)ref|XP_009619746.1|2e-99PREDICTED: WD repeat-containing protein 74 [Nicotiana tomentosiformis]760008560 (3)gb|EYU23109.1|9e-23hypothetical protein MIMGU_mgv1a007540mg [Erythranthe guttata]
JMSF034K05Sequence679002300 (3)ref|XP_009619746.1|5e-98PREDICTED: WD repeat-containing protein 74 [Nicotiana tomentosiformis]659008560 (3)ref|XP_009619746.1|6e-09PREDICTED: WD repeat-containing protein 74 [Nicotiana tomentosiformis]
JMSF046B01Sequence812002300 (3)ref|XP_009619746.1|7e-127PREDICTED: WD repeat-containing protein 74 [Nicotiana tomentosiformis]849008560 (3)ref|XP_006352262.1|173PREDICTED: WD repeat-containing protein 74-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF046B01+                               TAGATGGTTGGACAGTGTATGTAGGAAATGGGTCAGGTG
                      ____________________________________________________________
consensus                                  TAGATGGTTGGACAGTGTATGTAGGAAATGGGTCAGGTG
 
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rJMSF046B01+          ACCTTGCTTCATTTGATATGCGTACAGGGAAGCTTTTGGGATCCTTCTTGGGTAAATGTT
                      ____________________________________________________________
consensus             ACCTTGCTTCATTTGATATGCGTACAGGGAAGCTTTTGGGATCCTTCTTGGGTAAATGTT
 
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rJMSF046B01+          CTGGAAGTATTCGATCCATTGCTAGACATCCAGAGCTTCCAGTGATCGGCTCCTGTGGGT
rJMSF029J12+                           ATTGCTAGACATCCAGAGCTTCCAGTGATCGGCTCCTGTGGGT
                      ____________________________________________________________
consensus             CTGGAAGTATTCGATCCATTGCTAGACATCCAGAGCTTCCAGTGATCGGCTCCTGTGGGT
 
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rJMSF046B01+          TGGACAGCTATTTGCGCATTTGGGATGTAAAGTCACGGCAACTTTTGTCCGCGGTTTTCT
rJMSF034K05+                             TTGGGATGTAAAGTCACGGCAACTTTTGTCCGCGGTTTTCT
rJMSF029J12+          TGGACAGCTATTTGCGCATTTGGGATGTAAAGTCACGGCAACTTTTGTCCGCGGTTTTCT
                      ____________________________________________________________
consensus             TGGACAGCTATTTGCGCATTTGGGATGTAAAGTCACGGCAACTTTTGTCCGCGGTTTTCT
 
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rJMSF046B01+          TGAAGCAGCATCTTACAAATGTTGTTTTTGATTCTCATTTTAGCAATGAAGCCCCGCTAC
rJMSF034K05+          TGAAGCAGCATCTTACAAATGTTGTTTTTGATTCTCATTTTAGCAATGAAGCCCCGCTAC
rJMSF029J12+          TGAAGCAGCATCTTACAAATGTTGTTTTTGATTCTCATTTTAGCAATGAAGCCCCGCTAC
                      ____________________________________________________________
consensus             TGAAGCAGCATCTTACAAATGTTGTTTTTGATTCTCATTTTAGCAATGAAGCCCCGCTAC
 
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rJMSF046B01+          CTCCAGAGCCACAAGATGCGAGTGAGACACAAGAAGAATGTGAAGAAGAGAATACAATGC
rJMSF034K05+          CTCCAGAGCCACAAGATGCGAGTGAGACACAAGAAGAATGTGAAGAAGAGAATACAATGC
rJMSF029J12+          CTCCAGAGCCACAAGATGCGAGTGAGACACAAGAAGAATGTGAAGAAGAGAATACAATGC
                      ____________________________________________________________
consensus             CTCCAGAGCCACAAGATGCGAGTGAGACACAAGAAGAATGTGAAGAAGAGAATACAATGC
 
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rJMSF046B01+          CTACGAAAAGGAAGAAAGCATCTAAAGACCACAGTCGAAAAAAGAAGCTCAAGACCAAGA
rJMSF034K05+          CTACGAAAAGGAAGAAAGCATCTAAAGACCACAGTCGAAAAAAGAAGCTCAAGACCAAGA
rJMSF029J12+          CTACGAAAAGGAAGAAAGCATCTAAAGACCACAGTCGAAAAAAGAAGCTCAAGACCAAGA
                      ____________________________________________________________
consensus             CTACGAAAAGGAAGAAAGCATCTAAAGACCACAGTCGAAAAAAGAAGCTCAAGACCAAGA
 
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rJMSF046B01+          AAACAGCTCGTGAAGACCCAGAGCAGCAAGATGTGAGTGAGATGTCTCATTGTGAAGACC
rJMSF034K05+          AAACAGCTCGTGAAGACCCAGAGCAGCAAGATGTGAGTGAGATGTCTCATTGTGAAGACC
rJMSF029J12+          AAACAGCTCGTGAAGACCCAGAGCAGCAAGATGTGAGTGAGATGTCCCATTGTGAAGACC
                      ____________________________________________________________
consensus             AAACAGCTCGTGAAGACCCAGAGCAGCAAGATGTGAGTGAGATGTCTCATTGTGAAGACC
 
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rJMSF046B01+          ATGAAAACGGGCTAAATGACGAAGCTGAAGAGGAGATGACGCCCCCTAGAAAAGAAAAGG
rJMSF034K05+          ATGAAAACGGGCTAAATGACGAAGCTGAAGAGGAGATGACGCCCCCTAGAAAAGAAAAGG
rJMSF029J12+          ATGAAAACGGGCTAAATGACGAAGCTGAAGAGGAGATGACGCCCCCTAGAAAAGAAAAGG
                      ____________________________________________________________
consensus             ATGAAAACGGGCTAAATGACGAAGCTGAAGAGGAGATGACGCCCCCTAGAAAAGAAAAGG
 
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rJMSF046B01+          TATCTAAACGACACAGTGGCAAGAAGAAGAAAACAGGCAAGAGCAGCAGCGTGTTGTGAT
rJMSF034K05+          TATCTAAACGACACAGTGGCAAGAAGAAGAAAACAGGCAAGAGCAGCAGCGTGTTGTGAT
rJMSF029J12+          TATCTAAACGACACAGTGGCAAGAAGAAGAAAACAGGCAAGAGCAGCAGCGTGTTGTGAT
                      ____________________________________________________________
consensus             TATCTAAACGACACAGTGGCAAGAAGAAGAAAACAGGCAAGAGCAGCAGCGTGTTGTGAT
 
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rJMSF046B01+          CTTAGCCATAATTTGCTTCACGTCCAACGAACTTCTACACTAACTAGCTACATCAACCAA
rJMSF034K05+          CTTAGCCATAATTTGCTTCACGTCCAACGAACTTCTACACTAACTAGCTACATCGACCAA
rJMSF029J12+          CTTAGCCATAATTTGCTTCACGTCCAACGAACTTCTACACTAACTAGCTACATCGACCAA
                      ____________________________________________________________
consensus             CTTAGCCATAATTTGCTTCACGTCCAACGAACTTCTACACTAACTAGCTACATCGACCAA
 
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rJMSF046B01+          CTCCCAATTCATGCCTGATCAAAAGCCTATTGGCGCATTTTGAACGGGGTCTGTTGTTAT
rJMSF034K05+          CTCCCAATTCATGCCTGATCAAAAGCCTATTGGCGCATTTTGAACGGGGTCTGTTGTTAT
rJMSF029J12+          CTCCCAATTCATGCCTGATCAAAAGCCTATTGGCGCATTTTGAACGGGGTCTGTTGTTAT
                      ____________________________________________________________
consensus             CTCCCAATTCATGCCTGATCAAAAGCCTATTGGCGCATTTTGAACGGGGTCTGTTGTTAT
 
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rJMSF046B01+          ACAGCTAGTTCAATTTTGTGGTATAAGAAAATTATTTCCTTTTATTTTCTCCTTTGTATA
rJMSF034K05+          ACAGCTAGTTCAATTTTGTGGTATAAGAAAATTATTTCCTTTTATTTTCTCCTTTGTATA
rJMSF029J12+          ACAGCTAGTTCAATTTTGTGGTATAAGAAAATTATTTCCTTTTATTTTCTCCTTTGTATA
                      ____________________________________________________________
consensus             ACAGCTAGTTCAATTTTGTGGTATAAGAAAATTATTTCCTTTTATTTTCTCCTTTGTATA
 
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rJMSF046B01+          CGACATTGCTAATGACGTGTATGCTTGTCAACAATAGGATC-AATGTATGTGTCATGGAT
rJMSF034K05+          CGACATTGCTAATGA-GTGTATGCTTGTCAACAATAGGATCAAATGTATGTGTCATGGAT
rJMSF029J12+          CGACATTGCTAATGA-GTGTATGCTTGTCAACAATAGGATC-AATGTATGTGTCATGGAT
                      ____________________________________________________________
consensus             CGACATTGCTAATGA-GTGTATGCTTGTCAACAATAGGATC-AATGTATGTGTCATGGAT
 
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rJMSF046B01+          CTTCTGCTCCAGTTCTTTTTATATGATGTAA                             
rJMSF034K05+          CTTCTGCT-C                                                  
rJMSF029J12+          CTTCTGCT-CAGTTCTTTTTATATGATGTAATGCACTGGAATGATATATTAATCTCATGT
                      ____________________________________________________________
consensus             CTTCTGCT-CAGTTCTTTTTATATGATGTAATGCACTGGAATGATATATTAATCTCATGT